Streptomyces albus strain DSM 40763 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Whole-genome sequencing of streptomyces sp.
Submitted (18-AUG-2022) Research Institute, CKDBiO Corporation, 292 SinWon-ro, AnSan-si 15604, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP103061.1.\nBacteria and source DNA available from Leibniz Institute\nDSMZ-German Collection of Microorganisms and Cell Cultures GmbH.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FLYE v. Jul-2022\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 93.6x\nSequencing Technology :: Illumina NovaSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/29/2022 12:57:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,804\nCDSs (total) :: 6,723\nGenes (coding) :: 6,496\nCDSs (with protein) :: 6,496\nGenes (RNA) :: 81\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 3\nPseudo Genes (total) :: 227\nCDSs (without protein) :: 227\nPseudo Genes (ambiguous residues) :: 0 of 227\nPseudo Genes (frameshifted) :: 52 of 227\nPseudo Genes (incomplete) :: 185 of 227\nPseudo Genes (internal stop) :: 9 of 227\nPseudo Genes (multiple problems) :: 17 of 227\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018522990.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: similar to AA sequence:RefSeq:WP_012377493.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994192.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018102743.1
COORDINATES: similar to AA sequence:RefSeq:WP_019546356.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017238179.1
COORDINATES: similar to AA sequence:RefSeq:WP_018550146.1
COORDINATES: similar to AA sequence:RefSeq:WP_016909319.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158481.1
COORDINATES: similar to AA sequence:RefSeq:WP_016645026.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039516.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003955461.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003954147.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003979129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043480.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043481.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523293.1
COORDINATES: similar to AA sequence:RefSeq:WP_010886183.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_016470047.1
COORDINATES: similar to AA sequence:RefSeq:WP_019355422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010275192.1
COORDINATES: similar to AA sequence:RefSeq:WP_015575460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018524526.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018653303.1
COORDINATES: similar to AA sequence:RefSeq:WP_006134387.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated endoribonuclease Cas2e
COORDINATES: similar to AA sequence:RefSeq:WP_014139531.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated endonuclease Cas1e
COORDINATES: similar to AA sequence:RefSeq:WP_019891668.1
GO:0003674 - molecular_function [Evidence IEA]
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_005477207.1
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: similar to AA sequence:RefSeq:WP_018556245.1
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: protein motif:HMM:NF021034.2
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: similar to AA sequence:RefSeq:WP_006129967.1
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014156059.1
COORDINATES: similar to AA sequence:RefSeq:WP_014156058.1
COORDINATES: similar to AA sequence:RefSeq:WP_014046834.1
COORDINATES: protein motif:HMM:NF013315.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF017103.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010279500.1
COORDINATES: similar to AA sequence:RefSeq:WP_016468279.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019074364.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074365.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449488.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677463.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677464.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979068.1
COORDINATES: similar to AA sequence:RefSeq:WP_018844947.1
COORDINATES: similar to AA sequence:RefSeq:WP_019055456.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109695.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449479.1
COORDINATES: similar to AA sequence:RefSeq:WP_018893047.1
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020135859.1
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_018569244.1
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003954267.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523459.1
COORDINATES: similar to AA sequence:RefSeq:WP_019328843.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329469.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014668683.1
COORDINATES: similar to AA sequence:RefSeq:WP_014143536.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523008.1
COORDINATES: similar to AA sequence:RefSeq:WP_007445969.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569237.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569236.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569233.1
COORDINATES: similar to AA sequence:RefSeq:WP_007493454.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019074412.1
COORDINATES: protein motif:HMM:NF027223.2
nucleoside 2-deoxyribosyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006247709.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_019884392.1
COORDINATES: similar to AA sequence:RefSeq:WP_019357543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015612228.1
COORDINATES: similar to AA sequence:RefSeq:WP_009714876.1
COORDINATES: similar to AA sequence:RefSeq:WP_009714877.1
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_018569225.1
COORDINATES: similar to AA sequence:RefSeq:WP_016572086.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013713110.1
COORDINATES: protein motif:HMM:NF039462.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670178.1
COORDINATES: similar to AA sequence:RefSeq:WP_019061596.1
COORDINATES: similar to AA sequence:RefSeq:WP_012998015.1
COORDINATES: similar to AA sequence:RefSeq:WP_012998014.1
COORDINATES: similar to AA sequence:RefSeq:WP_019525580.1
COORDINATES: similar to AA sequence:RefSeq:WP_006129984.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006129985.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_009943585.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014181489.1
COORDINATES: similar to AA sequence:RefSeq:WP_006129988.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006129989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006129990.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_007074950.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612357.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677565.1
COORDINATES: similar to AA sequence:RefSeq:WP_018551949.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039484.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677568.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043474.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449423.1
helicase associated domain-containing protein