Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Microvirga.
Microvirga ossetica sp. nov. a new species of rhizobia isolated from root nodules of the legume species Vicia alpestris Steven originated from North Ossetia region in the Caucasus
Submitted (19-JUL-2016) Laboratory of Microbiological Monitoring and Bioremediation of Soils, ARRIAM, Podbelskogo sh., 3, St. Petersburg, Pushkin 196608, Russian Federation
REFSEQ INFORMATION: The reference sequence is identical to\nCP016621.1.\nSource bacteria available from All-Russia Research Institute for\nAgricultural Microbiology, Rusian Collection of Agricultural\nMicroorganisms, collection RCAM 02728. Address: Sh. Podbelskogo 3,\nPushkin-8, 196608, Saint-Petersburg, Russian Federation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP Assembly v. 3\nGenome Coverage :: 125x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 10:37:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,228\nCDSs (total) :: 9,145\nGenes (coding) :: 8,618\nCDSs (with protein) :: 8,618\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 5\nPseudo Genes (total) :: 527\nCDSs (without protein) :: 527\nPseudo Genes (ambiguous residues) :: 0 of 527\nPseudo Genes (frameshifted) :: 211 of 527\nPseudo Genes (incomplete) :: 366 of 527\nPseudo Genes (internal stop) :: 62 of 527\nPseudo Genes (multiple problems) :: 103 of 527\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017954.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF037144.2
COORDINATES: protein motif:HMM:NF013965.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007424229.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: protein motif:HMM:NF024140.2
MCP four helix bundle domain-containing protein
COORDINATES: protein motif:HMM:NF019997.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF020376.2
COORDINATES: similar to AA sequence:RefSeq:WP_003603926.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012488.2
COORDINATES: similar to AA sequence:RefSeq:WP_014415361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014415360.1
COORDINATES: similar to AA sequence:RefSeq:WP_017989597.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014415357.1
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04096.1
DNA phosphorothioation-associated putative methyltransferase
COORDINATES: protein motif:HMM:NF037056.2
COORDINATES: similar to AA sequence:RefSeq:WP_012972812.1
COORDINATES: protein motif:HMM:TIGR04346.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501113.1
COORDINATES: protein motif:HMM:NF016785.2
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: protein motif:HMM:NF019844.2
COORDINATES: similar to AA sequence:RefSeq:WP_015686297.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008873509.1
COORDINATES: similar to AA sequence:RefSeq:WP_018902110.1
COORDINATES: protein motif:HMM:NF012774.2
GO:0005509 - calcium ion binding [Evidence IEA]
GO:0007156 - homophilic cell adhesion via plasma membrane adhesion molecules [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF040041.1
COORDINATES: protein motif:HMM:NF021580.2
COORDINATES: protein motif:HMM:NF012464.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013457.2
GO:0015485 - cholesterol binding [Evidence IEA]
thiol-activated cytolysin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005860197.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762717.1
COORDINATES: protein motif:HMM:TIGR03454.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558630.1
COORDINATES: protein motif:HMM:NF037100.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein