Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Microvirga.
Microvirga ossetica sp. nov. a new species of rhizobia isolated from root nodules of the legume species Vicia alpestris Steven originated from North Ossetia region in the Caucasus
Submitted (19-JUL-2016) Laboratory of Microbiological Monitoring and Bioremediation of Soils, ARRIAM, Podbelskogo sh., 3, St. Petersburg, Pushkin 196608, Russian Federation
REFSEQ INFORMATION: The reference sequence is identical to\nCP016620.1.\nSource bacteria available from All-Russia Research Institute for\nAgricultural Microbiology, Rusian Collection of Agricultural\nMicroorganisms, collection RCAM 02728. Address: Sh. Podbelskogo 3,\nPushkin-8, 196608, Saint-Petersburg, Russian Federation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP Assembly v. 3\nGenome Coverage :: 125x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 10:37:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,228\nCDSs (total) :: 9,145\nGenes (coding) :: 8,618\nCDSs (with protein) :: 8,618\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 5\nPseudo Genes (total) :: 527\nCDSs (without protein) :: 527\nPseudo Genes (ambiguous residues) :: 0 of 527\nPseudo Genes (frameshifted) :: 211 of 527\nPseudo Genes (incomplete) :: 366 of 527\nPseudo Genes (internal stop) :: 62 of 527\nPseudo Genes (multiple problems) :: 103 of 527\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009466009.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004513546.1
COORDINATES: protein motif:HMM:NF023398.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273229.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013948870.1
COORDINATES: protein motif:HMM:NF018561.2
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018452.2
COORDINATES: similar to AA sequence:RefSeq:WP_020041040.1
COORDINATES: similar to AA sequence:RefSeq:WP_014131760.1
COORDINATES: similar to AA sequence:RefSeq:WP_008970406.1
COORDINATES: similar to AA sequence:RefSeq:WP_018440363.1
COORDINATES: similar to AA sequence:RefSeq:WP_018263935.1
COORDINATES: similar to AA sequence:RefSeq:WP_012320975.1
COORDINATES: similar to AA sequence:RefSeq:WP_019700507.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF022073.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0047989 - hydroxybutyrate-dimer hydrolase activity [Evidence IEA]
GO:0019605 - butyrate metabolic process [Evidence IEA]
3-hydroxybutyrate oligomer hydrolase family protein
COORDINATES: protein motif:HMM:NF021554.2
COORDINATES: similar to AA sequence:RefSeq:WP_009489626.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967991.1
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649589.1
COORDINATES: similar to AA sequence:RefSeq:NP_052676.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015887892.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677395.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF019157.2
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007601484.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492995.1
COORDINATES: protein motif:HMM:NF040876.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797351.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024545.2
COORDINATES: similar to AA sequence:RefSeq:WP_018497051.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797348.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273228.1
COORDINATES: similar to AA sequence:RefSeq:WP_020494312.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_020070081.1
COORDINATES: similar to AA sequence:RefSeq:WP_020093790.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914696.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: protein motif:HMM:NF019370.2
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF018949.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003386472.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488611.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488610.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488609.1
COORDINATES: protein motif:HMM:NF027613.2
COORDINATES: similar to AA sequence:RefSeq:WP_009489416.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764799.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015685913.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_043767036.1
COORDINATES: similar to AA sequence:RefSeq:WP_005319929.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763926.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871394.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012651678.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008835873.1
COORDINATES: similar to AA sequence:RefSeq:WP_008331586.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_008512752.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348297.1
COORDINATES: similar to AA sequence:RefSeq:WP_012253440.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007757337.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913938.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_007425401.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489204.1
COORDINATES: similar to AA sequence:RefSeq:WP_011473072.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336404.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658619.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009494539.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009491197.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015928136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452953.1
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014286547.1
COORDINATES: protein motif:HMM:NF017775.2
ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: similar to AA sequence:RefSeq:WP_019402223.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_007006091.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402225.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_017453975.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_015930261.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019402228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007562078.1
COORDINATES: similar to AA sequence:RefSeq:WP_035718769.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489570.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009493866.1
COORDINATES: similar to AA sequence:RefSeq:WP_012253441.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092528.1
COORDINATES: similar to AA sequence:RefSeq:WP_015926997.1
COORDINATES: protein motif:HMM:NF012387.2
COORDINATES: similar to AA sequence:RefSeq:WP_006217950.1
COORDINATES: similar to AA sequence:RefSeq:WP_013080807.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_007675640.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492111.1
putative N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_008509986.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492115.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492117.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006054479.1
COORDINATES: similar to AA sequence:RefSeq:WP_018117163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492123.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857268.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009492127.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084489.1
COORDINATES: similar to AA sequence:RefSeq:WP_014762497.1
COORDINATES: similar to AA sequence:RefSeq:WP_019196085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014130790.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273947.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489027.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014857749.1
COORDINATES: similar to AA sequence:RefSeq:WP_012386207.1
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013624.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_018261131.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438513.1
COORDINATES: protein motif:HMM:NF012783.2
ATP-dependent Clp protease proteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020096515.1
COORDINATES: similar to AA sequence:RefSeq:WP_018557564.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762606.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762607.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762608.1
COORDINATES: similar to AA sequence:RefSeq:WP_018096489.1
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: protein motif:HMM:NF013173.2
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010910493.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_018273538.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009764493.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009763753.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488899.1
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:TIGR02100.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012637119.1
COORDINATES: similar to AA sequence:RefSeq:WP_018262757.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592116.1
COORDINATES: similar to AA sequence:RefSeq:WP_018261849.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067850.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011388434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012758060.1
COORDINATES: similar to AA sequence:RefSeq:WP_015857237.1
COORDINATES: similar to AA sequence:RefSeq:WP_018261143.1
COORDINATES: similar to AA sequence:RefSeq:WP_017524389.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066771.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014439297.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762797.1
COORDINATES: similar to AA sequence:RefSeq:WP_016556265.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492314.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832840.1
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: similar to AA sequence:RefSeq:WP_009762748.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489977.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009491002.1
COORDINATES: similar to AA sequence:RefSeq:WP_010685337.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488662.1
COORDINATES: similar to AA sequence:RefSeq:WP_012631079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251858.1
COORDINATES: protein motif:HMM:NF013398.2
COORDINATES: similar to AA sequence:RefSeq:WP_007798921.1
COORDINATES: protein motif:HMM:NF013411.2
COORDINATES: similar to AA sequence:RefSeq:WP_009493272.1
COORDINATES: similar to AA sequence:RefSeq:WP_012703230.1
magnesium transporter CorA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015932434.1
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: similar to AA sequence:RefSeq:WP_009490017.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764880.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019860416.1
COORDINATES: similar to AA sequence:RefSeq:WP_003505635.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549458.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003549455.1
COORDINATES: similar to AA sequence:RefSeq:WP_004810142.1
COORDINATES: similar to AA sequence:RefSeq:WP_013016854.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007604356.1
COORDINATES: protein motif:HMM:NF014156.2
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF036578.2
COORDINATES: similar to AA sequence:RefSeq:WP_014057893.1
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_009489241.1
COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438684.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556731.1
COORDINATES: similar to AA sequence:RefSeq:WP_003545829.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003545831.1
COORDINATES: similar to AA sequence:RefSeq:WP_018012115.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003542531.1
COORDINATES: similar to AA sequence:RefSeq:WP_020465363.1
COORDINATES: similar to AA sequence:RefSeq:WP_004434515.1
COORDINATES: protein motif:HMM:NF024172.2
COORDINATES: similar to AA sequence:RefSeq:WP_003526688.1
COORDINATES: similar to AA sequence:RefSeq:WP_018272610.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675974.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675975.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975330.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015550.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611628.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007563971.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009764862.1
COORDINATES: protein motif:HMM:NF037848.2
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009488429.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489093.1
COORDINATES: similar to AA sequence:RefSeq:WP_011155949.1
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018330112.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331202.1
COORDINATES: similar to AA sequence:RefSeq:WP_014491403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452415.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488437.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_002714737.1
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009488441.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009488443.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_007436661.1
COORDINATES: similar to AA sequence:RefSeq:WP_013045474.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611110.1
COORDINATES: protein motif:HMM:NF025114.2
COORDINATES: similar to AA sequence:RefSeq:WP_011926853.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_009762499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012322326.1
COORDINATES: similar to AA sequence:RefSeq:WP_009494099.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_011192108.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009762512.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF040041.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199596.1
COORDINATES: similar to AA sequence:RefSeq:WP_016840641.1
COORDINATES: protein motif:HMM:NF022894.2
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015933892.1
COORDINATES: protein motif:HMM:NF017277.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
COORDINATES: similar to AA sequence:RefSeq:WP_009494081.1
COORDINATES: protein motif:HMM:NF019344.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012753951.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488587.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346204.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762360.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491289.1
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_057144789.1
COORDINATES: protein motif:HMM:NF018785.2
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013068.2
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:TIGR01843.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF021127.2
COORDINATES: protein motif:HMM:NF021445.2
phosphatidylglycerol lysyltransferase domain-containing protein
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_015929505.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611268.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566314.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840455.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840454.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680655.1
COORDINATES: similar to AA sequence:RefSeq:WP_003584013.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469682.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333954.1
COORDINATES: similar to AA sequence:RefSeq:WP_015928932.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245772.1
GO:0015368 - calcium:monoatomic cation antiporter activity [Evidence IEA]
GO:0006816 - calcium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007598717.1
COORDINATES: protein motif:HMM:NF016292.2
COORDINATES: similar to AA sequence:RefSeq:WP_018641854.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012353131.1
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: protein motif:HMM:NF024589.2
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03454.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492190.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452059.1
COORDINATES: similar to AA sequence:RefSeq:WP_012284937.1
COORDINATES: similar to AA sequence:RefSeq:WP_004512901.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492191.1
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819879.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498774.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779828.1
COORDINATES: similar to AA sequence:RefSeq:WP_015929966.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_017276664.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024880.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF018961.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488681.1
COORDINATES: similar to AA sequence:RefSeq:WP_012681878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341248.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_020187431.1
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_007801621.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801618.1
COORDINATES: similar to AA sequence:RefSeq:WP_015317092.1
COORDINATES: similar to AA sequence:RefSeq:WP_017988339.1
COORDINATES: similar to AA sequence:RefSeq:WP_006146718.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333720.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762796.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606159.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017876992.1
COORDINATES: protein motif:HMM:NF016999.2
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012319841.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189477.1
COORDINATES: similar to AA sequence:RefSeq:WP_012507665.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333144.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_012975256.1
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: similar to AA sequence:RefSeq:WP_009489524.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017275678.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403621.1
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008552838.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490025.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012247987.1
COORDINATES: similar to AA sequence:RefSeq:WP_004221314.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996816.1
COORDINATES: similar to AA sequence:RefSeq:WP_020184365.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010682003.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009489878.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764892.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489171.1
COORDINATES: protein motif:HMM:NF037679.2
COORDINATES: similar to AA sequence:RefSeq:WP_014331515.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019197135.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_011087690.1
COORDINATES: protein motif:HMM:NF014279.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488999.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488589.1
COORDINATES: protein motif:HMM:NF037510.2
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_017265661.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
COORDINATES: similar to AA sequence:RefSeq:WP_018044627.1
COORDINATES: similar to AA sequence:RefSeq:WP_007669542.1
COORDINATES: similar to AA sequence:RefSeq:WP_009493395.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488458.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489170.1
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: protein motif:HMM:NF023518.2
COORDINATES: similar to AA sequence:RefSeq:WP_004210861.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013625.2
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003534594.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251268.1
COORDINATES: protein motif:HMM:NF024929.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011087397.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764421.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF015366.2
COORDINATES: similar to AA sequence:RefSeq:WP_009764425.1
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF025091.2
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015927488.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020185599.1
COORDINATES: similar to AA sequence:RefSeq:WP_012203696.1
COORDINATES: similar to AA sequence:RefSeq:WP_015668511.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491423.1
COORDINATES: similar to AA sequence:RefSeq:WP_018044208.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009488300.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737248.1
COORDINATES: similar to AA sequence:RefSeq:WP_007669541.1
COORDINATES: similar to AA sequence:RefSeq:WP_014855848.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006052951.1
COORDINATES: similar to AA sequence:RefSeq:WP_010684428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006272845.1
COORDINATES: similar to AA sequence:RefSeq:WP_003604178.1
COORDINATES: similar to AA sequence:RefSeq:WP_015931968.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019577320.1
COORDINATES: similar to AA sequence:RefSeq:WP_009113645.1
COORDINATES: similar to AA sequence:RefSeq:WP_006226816.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976437.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491779.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: protein motif:HMM:NF019376.2
COORDINATES: similar to AA sequence:RefSeq:WP_007605543.1
COORDINATES: similar to AA sequence:RefSeq:WP_003530404.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603861.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490543.1
COORDINATES: protein motif:HMM:NF014577.2
COORDINATES: protein motif:HMM:NF019430.2
GO:0042597 - periplasmic space [Evidence IEA]
Spy/CpxP family protein refolding chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_012253605.1
COORDINATES: similar to AA sequence:RefSeq:WP_012255119.1
COORDINATES: similar to AA sequence:RefSeq:WP_011086269.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603862.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400940.1
COORDINATES: similar to AA sequence:RefSeq:WP_015457621.1
COORDINATES: protein motif:HMM:NF018420.2
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: similar to AA sequence:RefSeq:WP_006449679.1