Acinetobacter wuhouensis strain WCHA60 plasmid p7_010060, complete sequence.
type: Entry
definition: Acinetobacter wuhouensis strain WCHA60 plasmid p7_010060, complete sequence.
sequence version: NZ_CP031715.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP031715.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356836
keyword: RefSeq
source: Acinetobacter wuhouensis
organism: Acinetobacter wuhouensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30117799
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031715.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,807\nCDSs (total) :: 3,701\nGenes (coding) :: 3,639\nCDSs (with protein) :: 3,639\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 21 of 62\nPseudo Genes (incomplete) :: 46 of 62\nPseudo Genes (internal stop) :: 13 of 62\nPseudo Genes (multiple problems) :: 16 of 62\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5009
topology: circular
so has quality: SO_0000988
location: 1..5009
location: region:1-5009:1
RO_0002162: 1879050

NZ_CP031715
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356836
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter wuhouensis sp. nov., isolated from hospital sewage
author: Hu, Y.
author: Feng, Y.
author: Qin, J.
author: Radolfova-Krizova, L.
author: Maixnerova, M.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Int J Syst Evol Microbiol
volume: 68
issue: 10
pages: 3212-3216
year: 2018
pubmed: 30117799

30117799
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (19-AUG-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (30-MAR-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5009:1
position: 5009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5009:1:source
so part of: sequence
organism: Acinetobacter wuhouensis
mol type: genomic DNA
strain: WCHA60
isolation source: hospital sewage
type material: type strain of Acinetobacter wuhouensis
plasmid: p7_010060
country: China
collection date: 2015-10-31

1879050
type: Taxonomy
SIO_000068: taxonomy

BEN71_RS00645
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00645
old locus tag: BEN71_00645
so part of: sequence
location: complement(join(4943..5009,1..149))
location: region:1-5009:-1
so has part: feature:1-149:-1:exon
so has part: feature:4943-5009:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5009:-1
position: 5009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-149:-1:exon

position:149:-1
position: 149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4943-5009:-1:exon

position:4943:-1
position: 4943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BEN71_RS00645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00645
old locus tag: BEN71_00645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQRLEDHLRRYKAIYTVIFGIIFLSILSTNLGRIENNTRSLEYDNSRLEKALIDINDNLDEIRKKYTDSFI
SIO_010081: BEN71_RS00645
subclass of: SO_0000673
so part of: BEN71_RS00645
location: complement(join(4943..5009,1..149))
location: region:1-5009:-1
so has part: feature:1-149:-1:exon
so has part: feature:4943-5009:-1:exon

WP_068975718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-149:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4943-5009:-1:exon

BEN71_RS00655
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00655
old locus tag: BEN71_00655
so part of: sequence
location: 349..621
location: region:349-621:1
so has part: feature:349-621:1:exon
subclass of: SO_0000010

position:349:1
position: 349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:621:1
position: 621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:349-621:1:exon

BEN71_RS00655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00655
old locus tag: BEN71_00655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004282227.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MTKSTENIEKKIEAQLEKLKQLKAQKQAIEARERTKQKEQERKDDTRRKILLGSYLIKKMNDNEANKEKILTELNEYLTEDRDRKLFGLQ
SIO_010081: BEN71_RS00655
subclass of: SO_0000673
so part of: BEN71_RS00655
location: 349..621
location: region:349-621:1
so has part: feature:349-621:1:exon

WP_068975717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:349-621:1:exon

BEN71_RS00660
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00660
old locus tag: BEN71_00660
so part of: sequence
location: complement(625..1269)
location: region:625-1269:-1
so has part: feature:625-1269:-1:exon
subclass of: SO_0000010

position:625:-1
position: 625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1269:-1
position: 1269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:625-1269:-1:exon

BEN71_RS00660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00660
old locus tag: BEN71_00660
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNNYARIFILILIAALILNLSYLFDFKDFSIQSFFNMITICLALWSLKFTQMTYQKSKKESEQKERKELLERQPSFLFKEVAQGKTTTNDVGYITYGYQYTFSMENIGKIAKHLSFSKIDNFENHPMIEDVILPNEITFLINNEAENITFEFVTRSEYWAIKSTDFFFSVTYRDIFGEERTMPLIMTVEPDLHSHINNQMYFVKLKDVPKELK
SIO_010081: BEN71_RS00660
subclass of: SO_0000673
so part of: BEN71_RS00660
location: complement(625..1269)
location: region:625-1269:-1
so has part: feature:625-1269:-1:exon

WP_068975716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:625-1269:-1:exon

BEN71_RS00665
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
gene: repM
locus tag: BEN71_RS00665
old locus tag: BEN71_00665
so part of: sequence
location: complement(1266..2192)
location: region:1266-2192:-1
so has part: feature:1266-2192:-1:exon
subclass of: SO_0000010

position:1266:-1
position: 1266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2192:-1
position: 2192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1266-2192:-1:exon

BEN71_RS00665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
gene: repM
locus tag: BEN71_RS00665
old locus tag: BEN71_00665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004779686.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKNGLVVKDNALINASYNLELTEQRLIMLAIINARELGQGITADSKLEIHASDYAKLFNVSTDASYKALKEAVNNLFNRQFSYTAEYKRTGKVGIVRSRWVSRIFYVDDLALLEITFAPDVVPLITRLEEHFTKYEAKQVAHLTSKYATRLYELLIAWREVGKTPIFELQQLRKNLGVEDSEYQRMHHFKSRVLETAISQINEYTDIKATYEQHKQGRTITGFSFKFKQKSQPKIEVKQDQNTPDFFVKMTDAQRHLFANKMSEMPEMSKYSYGTESYQQFAVRIAEMLLQPEKFRELYPILNKAGFK
SIO_010081: BEN71_RS00665
subclass of: SO_0000673
so part of: BEN71_RS00665
location: complement(1266..2192)
location: region:1266-2192:-1
so has part: feature:1266-2192:-1:exon

WP_068975715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1266-2192:-1:exon

BEN71_RS00670
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00670
old locus tag: BEN71_00670
so part of: sequence
location: 2755..3390
location: region:2755-3390:1
so has part: feature:2755-3390:1:exon
subclass of: SO_0000010

position:2755:1
position: 2755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3390:1
position: 3390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2755-3390:1:exon

BEN71_RS00670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00670
old locus tag: BEN71_00670
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFRIRGGKSLGGVSFSFGKTLTNKPSAKEIKDKEFKNFLVKSSSDLNECVFSFIRLHGYDPKIIQKNSIDLDELFIGLESFENFKKLSLSAKDTIEKVIYSGDTGIKGKRDITDSIFDLKSFIKSIPSTYHKPPQQFEYLKNPNLSIPNQFKSSAEIKFDKTKNILLWIGIFFMPYIFSWFTLRSNFTKKQRIIAFCWMVFVVILISSNK
SIO_010081: BEN71_RS00670
subclass of: SO_0000673
so part of: BEN71_RS00670
location: 2755..3390
location: region:2755-3390:1
so has part: feature:2755-3390:1:exon

WP_068975714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2755-3390:1:exon

BEN71_RS00675
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00675
old locus tag: BEN71_00675
so part of: sequence
location: complement(3505..3975)
location: region:3505-3975:-1
so has part: feature:3505-3975:-1:exon
subclass of: SO_0000010

position:3505:-1
position: 3505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3975:-1
position: 3975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3505-3975:-1:exon

BEN71_RS00675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00675
old locus tag: BEN71_00675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004282271.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQNDLDDQLYILLASMKEYREAIADDNKRLEQFYSQVATGVLDKAEKSLQDTNKQAIGALKSRIQELDKATSRLNTQFIMVYASAFIGLVIILFLALFLFVPSMDEIQQRRSEVNNLKQYSLDISKCGGQTCVKVMTKKCGYGENKDYCVIDPK
SIO_010081: BEN71_RS00675
subclass of: SO_0000673
so part of: BEN71_RS00675
location: complement(3505..3975)
location: region:3505-3975:-1
so has part: feature:3505-3975:-1:exon

WP_068975713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3505-3975:-1:exon

BEN71_RS00680
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00680
old locus tag: BEN71_00680
so part of: sequence
location: complement(3972..4943)
location: region:3972-4943:-1
so has part: feature:3972-4943:-1:exon
subclass of: SO_0000010

position:3972:-1
position: 3972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3972-4943:-1:exon

BEN71_RS00680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00680
old locus tag: BEN71_00680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005265044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIYHCSTKTVNRSSGRTAVASAAYRAGEKLEDERTGLTHDFTRKDGVAYSEIISNLDIQIDRGELWNLAEKTENRKDARTAREWVIALPDELDADQRKDLAKDFARSLVDRYGVIADLAIHEPSKGGSDKNHHAHIMLTTRKAELDTDNKLTLTTKTDIELSNAKRKSLGMGTTQEDIKQIRETWADLANKALERAGYREKIDHRSYTDQNNGLQATIHEGTKVTQLRRQGIDTEISRFNDNVKQQNTQQLHQNKQQKESVLQRGLNRVDQGFDQWQKNQESKRLELERQAEMKRQQELDKQRAEQALRKASQKLGRGGMSL
SIO_010081: BEN71_RS00680
subclass of: SO_0000673
so part of: BEN71_RS00680
location: complement(3972..4943)
location: region:3972-4943:-1
so has part: feature:3972-4943:-1:exon

WP_086322814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3972-4943:-1:exon