Acinetobacter wuhouensis strain WCHA60 plasmid p6_010060, complete sequence.
type: Entry
definition: Acinetobacter wuhouensis strain WCHA60 plasmid p6_010060, complete sequence.
sequence version: NZ_CP031714.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP031714.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356836
keyword: RefSeq
source: Acinetobacter wuhouensis
organism: Acinetobacter wuhouensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30117799
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031714.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,807\nCDSs (total) :: 3,701\nGenes (coding) :: 3,639\nCDSs (with protein) :: 3,639\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 21 of 62\nPseudo Genes (incomplete) :: 46 of 62\nPseudo Genes (internal stop) :: 13 of 62\nPseudo Genes (multiple problems) :: 16 of 62\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5113
topology: circular
so has quality: SO_0000988
location: 1..5113
location: region:1-5113:1
RO_0002162: 1879050

NZ_CP031714
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356836
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter wuhouensis sp. nov., isolated from hospital sewage
author: Hu, Y.
author: Feng, Y.
author: Qin, J.
author: Radolfova-Krizova, L.
author: Maixnerova, M.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Int J Syst Evol Microbiol
volume: 68
issue: 10
pages: 3212-3216
year: 2018
pubmed: 30117799

30117799
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (19-AUG-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (30-MAR-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5113:1
position: 5113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5113:1:source
so part of: sequence
organism: Acinetobacter wuhouensis
mol type: genomic DNA
strain: WCHA60
isolation source: hospital sewage
type material: type strain of Acinetobacter wuhouensis
plasmid: p6_010060
country: China
collection date: 2015-10-31

1879050
type: Taxonomy
SIO_000068: taxonomy

BEN71_RS00610
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
gene: repM
locus tag: BEN71_RS00610
old locus tag: BEN71_00610
so part of: sequence
location: complement(join(4898..5113,1..708))
location: region:1-5113:-1
so has part: feature:1-708:-1:exon
so has part: feature:4898-5113:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5113:-1
position: 5113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-708:-1:exon

position:708:-1
position: 708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4898-5113:-1:exon

position:4898:-1
position: 4898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BEN71_RS00610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
gene: repM
locus tag: BEN71_RS00610
old locus tag: BEN71_00610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004734284.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKKELVVKDNALINASYNLDLSEQRLILLAILEARQSNTPNDKDLTIHAESYINHFNVHRNTAYKVLKDACKSLFDRRFSYQKLTQKGNIENVISRWVQRISYVENEALVRIKFSDDVVPLITNLEKHFTSYELEQVSSLTSVYAIRLYELLIAWRSTGKVTMVELEELRLKLGIEPNEYKRMGQFKEKVLHLAIDQINKYTDIKAEYEQHKRGRSIIGFSFKFKQKQQPKKLDSKRDPNTPDFFIRMTDAQRHLFANKMSEMPEMGKYSQGTESYQQFAIRIADMLLEPEKFRELYPILEKSGFNP
SIO_010081: BEN71_RS00610
subclass of: SO_0000673
so part of: BEN71_RS00610
location: complement(join(4898..5113,1..708))
location: region:1-5113:-1
so has part: feature:1-708:-1:exon
so has part: feature:4898-5113:-1:exon

WP_004734284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-708:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4898-5113:-1:exon

BEN71_RS00615
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00615
old locus tag: BEN71_00615
so part of: sequence
location: 1289..1642
location: region:1289-1642:1
so has part: feature:1289-1642:1:exon
subclass of: SO_0000010

position:1289:1
position: 1289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1642:1
position: 1642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1289-1642:1:exon

BEN71_RS00615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00615
old locus tag: BEN71_00615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESQYSDGSDDNISQDELQKLYDRLIEVIEKTSKNLYRHTIERLKRINPTLDEIAELCTIFITLFEAKGIKHENSATEAVGVIKEAALAVHSGDAQTVIDCAYHLEDFISRLRSELK
SIO_010081: BEN71_RS00615
subclass of: SO_0000673
so part of: BEN71_RS00615
location: 1289..1642
location: region:1289-1642:1
so has part: feature:1289-1642:1:exon

WP_068975709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1289-1642:1:exon

BEN71_RS19415
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS19415
so part of: sequence
location: 1652..1780
location: region:1652-1780:1
so has part: feature:1652-1780:1:exon
subclass of: SO_0000010

position:1652:1
position: 1652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1780:1
position: 1780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652-1780:1:exon

BEN71_RS19415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS19415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRATYEAAFKILLALDECVNKAILQLEELEAMEEESFKLAA
SIO_010081: BEN71_RS19415
subclass of: SO_0000673
so part of: BEN71_RS19415
location: 1652..1780
location: region:1652-1780:1
so has part: feature:1652-1780:1:exon

WP_262443135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1652-1780:1:exon

BEN71_RS00620
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00620
old locus tag: BEN71_00620
so part of: sequence
location: complement(1827..2300)
location: region:1827-2300:-1
so has part: feature:1827-2300:-1:exon
subclass of: SO_0000010

position:1827:-1
position: 1827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2300:-1
position: 2300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1827-2300:-1:exon

BEN71_RS00620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00620
old locus tag: BEN71_00620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004282271.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQNDDLDDQLYILLASMKEYREAIADDQKRLEAFYNQVATGVLDKAEKSLQDTNKQAIGALKSRIQELDKATSRLNTQFIIVYASAFVAVVMIFFLALFLFVPSMDEIQQRRSEVNNLKQYSLDISKCEGQTCVKVMKKQCGYGKNGDYCVIDPK
SIO_010081: BEN71_RS00620
subclass of: SO_0000673
so part of: BEN71_RS00620
location: complement(1827..2300)
location: region:1827-2300:-1
so has part: feature:1827-2300:-1:exon

WP_068975710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1827-2300:-1:exon

BEN71_RS00625
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00625
old locus tag: BEN71_00625
so part of: sequence
location: complement(2297..3259)
location: region:2297-3259:-1
so has part: feature:2297-3259:-1:exon
subclass of: SO_0000010

position:2297:-1
position: 2297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3259:-1
position: 3259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2297-3259:-1:exon

BEN71_RS00625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00625
old locus tag: BEN71_00625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004917616.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIYHCSTKTVNRSSGRTAVASSAYRSGEKLKDERTGLTHDFTRKDGVAHSEIISNLDIEIDRSQLWNLAEQSENRKDARTAREWVIALPDELDADQRKDLAKAFATALVDRYGVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDPENNLILTTKAEIELSNAKRKNLNMGTTQEDIKQIRATWADLANHALEQAGQQQKIDHRSYADQNNGLQATIHEGTSVTQLRRQGIGTEISRYNDKVKQHNAQYLNQKEQQKETTLQRGFSRVEQGFDQWQKDREAKRLEQERQAEQKRQQEREMKKAEQKASPNLNKGGWSR
SIO_010081: BEN71_RS00625
subclass of: SO_0000673
so part of: BEN71_RS00625
location: complement(2297..3259)
location: region:2297-3259:-1
so has part: feature:2297-3259:-1:exon

WP_086322813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2297-3259:-1:exon

BEN71_RS00635
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00635
old locus tag: BEN71_00635
so part of: sequence
location: 3640..3921
location: region:3640-3921:1
so has part: feature:3640-3921:1:exon
subclass of: SO_0000010

position:3640:1
position: 3640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3921:1
position: 3921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3640-3921:1:exon

BEN71_RS00635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00635
old locus tag: BEN71_00635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005022338.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MTKSAENIEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDDTRRKILLGSYLIKKMQANEANKEKILAELNEYLTEERDRKLFNLSEKF
SIO_010081: BEN71_RS00635
subclass of: SO_0000673
so part of: BEN71_RS00635
location: 3640..3921
location: region:3640-3921:1
so has part: feature:3640-3921:1:exon

WP_068975712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3640-3921:1:exon

BEN71_RS00640
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00640
old locus tag: BEN71_00640
so part of: sequence
location: complement(4342..4863)
location: region:4342-4863:-1
so has part: feature:4342-4863:-1:exon
subclass of: SO_0000010

position:4342:-1
position: 4342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4863:-1
position: 4863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4342-4863:-1:exon

BEN71_RS00640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00640
old locus tag: BEN71_00640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004734286.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEVDISKYAALYEYQKNQFSIVKGHYEKLEDKATKYLTYLSIFITAFSLLAKYYFIDTNIKAPFFLTCLTSLYLALTFIFVCLASGKLFSCLQVKEVFQVNTDDQMIDYFQNNKIATVYLGLAHHYKKVISSYTEKNDEKANLLHKAFDYIQLAGASLVIVIILIILGKFLG
SIO_010081: BEN71_RS00640
subclass of: SO_0000673
so part of: BEN71_RS00640
location: complement(4342..4863)
location: region:4342-4863:-1
so has part: feature:4342-4863:-1:exon

WP_004734286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4342-4863:-1:exon