Acinetobacter wuhouensis strain WCHA60 plasmid p5_010060, complete sequence.
type: Entry
definition: Acinetobacter wuhouensis strain WCHA60 plasmid p5_010060, complete sequence.
sequence version: NZ_CP031713.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP031713.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356836
keyword: RefSeq
source: Acinetobacter wuhouensis
organism: Acinetobacter wuhouensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30117799
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031713.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,807\nCDSs (total) :: 3,701\nGenes (coding) :: 3,639\nCDSs (with protein) :: 3,639\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 21 of 62\nPseudo Genes (incomplete) :: 46 of 62\nPseudo Genes (internal stop) :: 13 of 62\nPseudo Genes (multiple problems) :: 16 of 62\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5424
topology: circular
so has quality: SO_0000988
location: 1..5424
location: region:1-5424:1
RO_0002162: 1879050

NZ_CP031713
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356836
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter wuhouensis sp. nov., isolated from hospital sewage
author: Hu, Y.
author: Feng, Y.
author: Qin, J.
author: Radolfova-Krizova, L.
author: Maixnerova, M.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Int J Syst Evol Microbiol
volume: 68
issue: 10
pages: 3212-3216
year: 2018
pubmed: 30117799

30117799
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (19-AUG-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (30-MAR-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5424:1
position: 5424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5424:1:source
so part of: sequence
organism: Acinetobacter wuhouensis
mol type: genomic DNA
strain: WCHA60
isolation source: hospital sewage
type material: type strain of Acinetobacter wuhouensis
plasmid: p5_010060
country: China
collection date: 2015-10-31

1879050
type: Taxonomy
SIO_000068: taxonomy

BEN71_RS00565
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00565
old locus tag: BEN71_00565
so part of: sequence
location: complement(722..1537)
location: region:722-1537:-1
so has part: feature:722-1537:-1:exon
subclass of: SO_0000010

position:722:-1
position: 722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1537:-1
position: 1537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:722-1537:-1:exon

BEN71_RS00565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00565
old locus tag: BEN71_00565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005098406.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKRSSLERKEFKQEELALMKKLDLNDIEIIKSDNLAQLLIWTSELAQHNHAQFIEFSNKLGLMAEDNVEEREEINKKIKFYRNSAFEENQIKDFYLKKLLDQGEATVRGYIKHPIKQNTKYAVISYHGYDFVSFATPEIIEKSPLNFIDFVQIEVPKTLADIHPDEALLLSTIKDFIKPFKEQYKKITSKNREIKEHNAVVHEIYIKIKNKEATLQKSTDSKPKESSPKSTENSAVPVEMKQVAIQKNMAPQEKPITVIKKRKFALNKEK
SIO_010081: BEN71_RS00565
subclass of: SO_0000673
so part of: BEN71_RS00565
location: complement(722..1537)
location: region:722-1537:-1
so has part: feature:722-1537:-1:exon

WP_068975705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:722-1537:-1:exon

BEN71_RS00570
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00570
old locus tag: BEN71_00570
so part of: sequence
location: complement(1596..1877)
location: region:1596-1877:-1
so has part: feature:1596-1877:-1:exon
subclass of: SO_0000010

position:1596:-1
position: 1596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1877:-1
position: 1877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1596-1877:-1:exon

BEN71_RS00570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00570
old locus tag: BEN71_00570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001129137.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MAKRKIIVTSSFKRDIKRRYLELVTAEWAEVLDCLVANSPLPEKYLDHPLKGGAEFKNCRDCHVKPDLVLIYRLVGDDVLELHQLDSHSEIFG
SIO_010081: BEN71_RS00570
subclass of: SO_0000673
so part of: BEN71_RS00570
location: complement(1596..1877)
location: region:1596-1877:-1
so has part: feature:1596-1877:-1:exon

WP_068975706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1596-1877:-1:exon

BEN71_RS00575
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00575
old locus tag: BEN71_00575
so part of: sequence
location: complement(1870..2163)
location: region:1870-2163:-1
so has part: feature:1870-2163:-1:exon
subclass of: SO_0000010

position:1870:-1
position: 1870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2163:-1
position: 2163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1870-2163:-1:exon

BEN71_RS00575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00575
old locus tag: BEN71_00575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004973743.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSAVNFNMRLEAELKEKVTPILEDYGLTMPQAFKLFLNQIVKTKTIPLSFDYARETALTPKAAAKLLQSLKEIENGEYTEYETVEEAIQAMSEEAHG
SIO_010081: BEN71_RS00575
subclass of: SO_0000673
so part of: BEN71_RS00575
location: complement(1870..2163)
location: region:1870-2163:-1
so has part: feature:1870-2163:-1:exon

WP_068975707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1870-2163:-1:exon

BEN71_RS00580
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00580
old locus tag: BEN71_00580
so part of: sequence
location: complement(2306..2806)
location: region:2306-2806:-1
so has part: feature:2306-2806:-1:exon
subclass of: SO_0000010

position:2306:-1
position: 2306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2806:-1
position: 2806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2306-2806:-1:exon

BEN71_RS00580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00580
old locus tag: BEN71_00580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005098403.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPDEKKLYALMAVAEQQQNLVNQAVKELQITKEDIQRAIAGQTHHTVSKAVNEGLQDGTAELVKTAKALGRLKNSIESASNEFSWKIITIVLGIFAILMLGIIWLFSVYIKPLENISKIESLREDGIQLEIRSCTVGEESKPCVRVMKEQCNYGKNHDLCVIDPI
SIO_010081: BEN71_RS00580
subclass of: SO_0000673
so part of: BEN71_RS00580
location: complement(2306..2806)
location: region:2306-2806:-1
so has part: feature:2306-2806:-1:exon

WP_068975708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2306-2806:-1:exon

BEN71_RS00585
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00585
old locus tag: BEN71_00585
so part of: sequence
location: complement(2803..3732)
location: region:2803-3732:-1
so has part: feature:2803-3732:-1:exon
subclass of: SO_0000010

position:2803:-1
position: 2803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3732:-1
position: 3732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2803-3732:-1:exon

BEN71_RS00585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00585
old locus tag: BEN71_00585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005249378.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIARLSVKVGKAGKAAPHAEYIDRDEEKKKKEEQAKTDLEHSAYGNMPKWAEHNPITFWQAADLYERKNGSTYREYEIALPREMNAEQRLELVEDFIQSEIGSKYPYQFAIHNPKAMDGNDQPHVHLMFNERLQDGIERDPEQYFKRYNSKNPERGGAKKDNTGKSYQERKTDIKDLRQRWADLCNSHLEKHQIDSRIDMRSYKEQGIEKEPEKKLLPSQAKDPEIREALQQSRTAYKELERLDLGDPKKDLKELKDSPISDKEIKQGIESFKADFDSFKQLALQQYKEQQKLEREQQKTMKFRGMSR
SIO_010081: BEN71_RS00585
subclass of: SO_0000673
so part of: BEN71_RS00585
location: complement(2803..3732)
location: region:2803-3732:-1
so has part: feature:2803-3732:-1:exon

WP_086322811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2803-3732:-1:exon

BEN71_RS19165
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS19165
old locus tag: BEN71_00590
so part of: sequence
location: complement(3732..3887)
location: region:3732-3887:-1
so has part: feature:3732-3887:-1:exon
subclass of: SO_0000010

position:3887:-1
position: 3887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732-3887:-1:exon

BEN71_RS19165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS19165
old locus tag: BEN71_00590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005098410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLKQVLGKIKDIIFGVIAAPLLIIIMMLASILDQRAFKKERNRKKEQDKT
SIO_010081: BEN71_RS19165
subclass of: SO_0000673
so part of: BEN71_RS19165
location: complement(3732..3887)
location: region:3732-3887:-1
so has part: feature:3732-3887:-1:exon

WP_167443670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3732-3887:-1:exon

BEN71_RS00595
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00595
old locus tag: BEN71_00595
so part of: sequence
location: 4168..4593
location: region:4168-4593:1
so has part: feature:4168-4593:1:exon
subclass of: SO_0000010

position:4168:1
position: 4168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4593:1
position: 4593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4168-4593:1:exon

BEN71_RS00595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00595
old locus tag: BEN71_00595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005253919.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MTNEWLSEKITYISALKNPNDAQKLLLELAQIQYRTPDQEKKLNALIKAEKAMERANKQKVAVKKLLNAEKEAERKARTRHLIQLGALFEIANLDKRDPAELLGVLLKTAEIDPNDMKWQIWKELGLETLSERNQSKKHTN
SIO_010081: BEN71_RS00595
subclass of: SO_0000673
so part of: BEN71_RS00595
location: 4168..4593
location: region:4168-4593:1
so has part: feature:4168-4593:1:exon

WP_068975702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4168-4593:1:exon

BEN71_RS00600
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00600
old locus tag: BEN71_00600
so part of: sequence
location: 4631..5056
location: region:4631-5056:1
so has part: feature:4631-5056:1:exon
subclass of: SO_0000010

position:4631:1
position: 4631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5056:1
position: 5056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4631-5056:1:exon

BEN71_RS00600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00600
old locus tag: BEN71_00600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNKLSWVIGIAAFILFMIIVTYSAKYMELPLDSDLGVIVTLLAGFLANKIYIFIKQIEPPYEDILTSNCWILGLTLMMVITGLIYKAFEHSYSDLSTYLRYALQIGSIAGTIWICRQIYTTKKVQYELRLKQLFEIENNK
SIO_010081: BEN71_RS00600
subclass of: SO_0000673
so part of: BEN71_RS00600
location: 4631..5056
location: region:4631-5056:1
so has part: feature:4631-5056:1:exon

WP_068975703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4631-5056:1:exon

BEN71_RS00605
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00605
old locus tag: BEN71_00605
so part of: sequence
location: 5092..5367
location: region:5092-5367:1
so has part: feature:5092-5367:1:exon
subclass of: SO_0000010

position:5092:1
position: 5092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5367:1
position: 5367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5092-5367:1:exon

BEN71_RS00605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00605
old locus tag: BEN71_00605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001075991.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEINDFKECINIWIKAETWHTNHPLDTERFHKAIHHIFMQNGTKLESEKFAKLLSEVLFEKYPNKNFIAQQVESAKDTYEVIRSYLFDIKE
SIO_010081: BEN71_RS00605
subclass of: SO_0000673
so part of: BEN71_RS00605
location: 5092..5367
location: region:5092-5367:1
so has part: feature:5092-5367:1:exon

WP_068975704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5092-5367:1:exon