Acinetobacter wuhouensis strain WCHA60 plasmid p3_010060, complete sequence.
type: Entry
definition: Acinetobacter wuhouensis strain WCHA60 plasmid p3_010060, complete sequence.
sequence version: NZ_CP031711.1
sequence date: 2022-11-06
sequence: sequence
division: CON
label: NZ_CP031711.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356836
keyword: RefSeq
source: Acinetobacter wuhouensis
organism: Acinetobacter wuhouensis
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30117799
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031711.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/06/2022 02:53:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,807\nCDSs (total) :: 3,701\nGenes (coding) :: 3,639\nCDSs (with protein) :: 3,639\nGenes (RNA) :: 106\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 4\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 21 of 62\nPseudo Genes (incomplete) :: 46 of 62\nPseudo Genes (internal stop) :: 13 of 62\nPseudo Genes (multiple problems) :: 16 of 62\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12086
topology: circular
so has quality: SO_0000988
location: 1..12086
location: region:1-12086:1
RO_0002162: 1879050

NZ_CP031711
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356836
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter wuhouensis sp. nov., isolated from hospital sewage
author: Hu, Y.
author: Feng, Y.
author: Qin, J.
author: Radolfova-Krizova, L.
author: Maixnerova, M.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Int J Syst Evol Microbiol
volume: 68
issue: 10
pages: 3212-3216
year: 2018
pubmed: 30117799

30117799
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hu, Y.
author: Long, H.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (19-AUG-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Hu, Y.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (30-MAR-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12086:1
position: 12086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12086:1:source
so part of: sequence
organism: Acinetobacter wuhouensis
mol type: genomic DNA
strain: WCHA60
isolation source: hospital sewage
type material: type strain of Acinetobacter wuhouensis
plasmid: p3_010060
country: China
collection date: 2015-10-31

1879050
type: Taxonomy
SIO_000068: taxonomy

BEN71_RS00415
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
gene: tet
locus tag: BEN71_RS00415
old locus tag: BEN71_00415
so part of: sequence
location: complement(11..1198)
location: region:11-1198:-1
so has part: feature:11-1198:-1:exon
subclass of: SO_0000010

position:11:-1
position: 11
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1198:-1
position: 1198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11-1198:-1:exon

BEN71_RS00415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
gene: tet
locus tag: BEN71_RS00415
old locus tag: BEN71_00415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856455.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter
translation: MKKSLSVILITIFLDAVGIGLIMPILPELLRSLAGAEAGGVHYGALLAVYALMQFIFTPILGALSDRFGRRPVLIISIAGATADYLLMAAAPSLLWLYIGRIFAGITGANMAVATAYVSDITPAHERAKRFGLLGAVFGIGFIAGPVIGGVLGEWNLHAPFFAAAFMNGINLIMTAVLLKESKHSNKMTEKVQEQSILKKLSYLITQPNMAPLLGIFLIITLVSQVPATLWVIYGQDRYGWSIFIAGVSLASYGICHSIAQAFAIAPMVKRFGEKNTLLCGIACDAIGLLLLSIAVEEWVPFALLPLFALGGVAVPALQAMMSRGISDERQGELQGLLSSFNSLGAIIGPVLVTSLYFMTQASAPGMVWALAAILYVITLPLLLKYRLNKYSGVP
SIO_010081: BEN71_RS00415
subclass of: SO_0000673
so part of: BEN71_RS00415
location: complement(11..1198)
location: region:11-1198:-1
so has part: feature:11-1198:-1:exon

WP_065996278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11-1198:-1:exon

BEN71_RS00420
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00420
old locus tag: BEN71_00420
so part of: sequence
location: 1264..1905
location: region:1264-1905:1
so has part: feature:1264-1905:1:exon
subclass of: SO_0000010

position:1264:1
position: 1264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1905:1
position: 1905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1264-1905:1:exon

BEN71_RS00420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00420
old locus tag: BEN71_00420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016927662.1
GO process: GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
translation: MSKKDIAPQRLTREIVLRTALDMLNEEGIDSITTRKLAQRLGIKSPTLYWHFKNKSLLMEAMAETIINEHHLVSLPIDGMTWQDWLLANSVSFRRALLAYRDGARLHARTSPSQGHFNTIEAQVALLSHAGFSPVEAVALLMTLGRFIVGWVLEEQQEEIRSDPPFEADPTIYPLMLQGVNTLQNMNADDIFENGIRMVIIGAERQLDIKMQT
SIO_010081: BEN71_RS00420
subclass of: SO_0000673
so part of: BEN71_RS00420
location: 1264..1905
location: region:1264-1905:1
so has part: feature:1264-1905:1:exon

WP_004787586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1264-1905:1:exon

BEN71_RS00425
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00425
old locus tag: BEN71_00425
so part of: sequence
location: complement(2024..2326)
location: region:2024-2326:-1
so has part: feature:2024-2326:-1:exon
subclass of: SO_0000010

position:2024:-1
position: 2024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2326:-1
position: 2326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2024-2326:-1:exon

BEN71_RS00425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00425
old locus tag: BEN71_00425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001140617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MAKTLQELLASRSPESQARIQKMADELLLENQLHLIREELEISQKELAETLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDVELPTGKHIGFNV
SIO_010081: BEN71_RS00425
subclass of: SO_0000673
so part of: BEN71_RS00425
location: complement(2024..2326)
location: region:2024-2326:-1
so has part: feature:2024-2326:-1:exon

WP_001140620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2024-2326:-1:exon

BEN71_RS00430
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00430
old locus tag: BEN71_00430
so part of: sequence
location: complement(2319..2675)
location: region:2319-2675:-1
so has part: feature:2319-2675:-1:exon
subclass of: SO_0000010

position:2319:-1
position: 2319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2675:-1
position: 2675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2319-2675:-1:exon

BEN71_RS00430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00430
old locus tag: BEN71_00430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005194067.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MWIVITTDLFNEWLEQQDESTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPLRQAIVLCIADKGSKKRFYKDMLDIADEQYQLHLTTLGDKSNG
SIO_010081: BEN71_RS00430
subclass of: SO_0000673
so part of: BEN71_RS00430
location: complement(2319..2675)
location: region:2319-2675:-1
so has part: feature:2319-2675:-1:exon

WP_004967307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2319-2675:-1:exon

BEN71_RS00440
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00440
old locus tag: BEN71_00440
so part of: sequence
location: complement(2896..3732)
location: region:2896-3732:-1
so has part: feature:2896-3732:-1:exon
subclass of: SO_0000010

position:2896:-1
position: 2896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3732:-1
position: 3732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2896-3732:-1:exon

BEN71_RS00440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00440
old locus tag: BEN71_00440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(6)-Id
translation: MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
SIO_010081: BEN71_RS00440
subclass of: SO_0000673
so part of: BEN71_RS00440
location: complement(2896..3732)
location: region:2896-3732:-1
so has part: feature:2896-3732:-1:exon

WP_000480968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2896-3732:-1:exon

BEN71_RS00445
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
gene: aph(3'')-Ib
locus tag: BEN71_RS00445
old locus tag: BEN71_00445
so part of: sequence
location: complement(3732..4535)
location: region:3732-4535:-1
so has part: feature:3732-4535:-1:exon
subclass of: SO_0000010

position:4535:-1
position: 4535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732-4535:-1:exon

BEN71_RS00445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
gene: aph(3'')-Ib
locus tag: BEN71_RS00445
old locus tag: BEN71_00445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminoglycoside O-phosphotransferase APH(3'')-Ib
translation: MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
SIO_010081: BEN71_RS00445
subclass of: SO_0000673
so part of: BEN71_RS00445
location: complement(3732..4535)
location: region:3732-4535:-1
so has part: feature:3732-4535:-1:exon

WP_001082319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3732-4535:-1:exon

BEN71_RS00450
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
gene: sul2
locus tag: BEN71_RS00450
old locus tag: BEN71_00450
so part of: sequence
location: complement(4705..5520)
location: region:4705-5520:-1
so has part: feature:4705-5520:-1:exon
subclass of: SO_0000010

position:4705:-1
position: 4705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5520:-1
position: 5520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4705-5520:-1:exon

BEN71_RS00450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
gene: sul2
locus tag: BEN71_RS00450
old locus tag: BEN71_00450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul2
translation: MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
SIO_010081: BEN71_RS00450
subclass of: SO_0000673
so part of: BEN71_RS00450
location: complement(4705..5520)
location: region:4705-5520:-1
so has part: feature:4705-5520:-1:exon

WP_001043260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4705-5520:-1:exon

BEN71_RS00455
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00455
old locus tag: BEN71_00455
so part of: sequence
location: complement(5655..6874)
location: region:5655-6874:-1
so has part: feature:5655-6874:-1:exon
subclass of: SO_0000010

position:5655:-1
position: 5655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6874:-1
position: 6874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5655-6874:-1:exon

BEN71_RS00455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00455
old locus tag: BEN71_00455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612089.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTKLKYAPEIRERAVQLLIESEKDYPSNWAAITAIAPKIGCTPETLRVWYQKYLDKLNPVKVQQLSDQERIKQLERENKELQRANEILRKAAGFFRPGGTRPPTQIMVDFIHNNKELYGVEAICRILPIAPSTYYRTLDLCENPEHRAKRDLHDLHHAEQIKRIWKESSGRYGVRKVWQKLKREGYIIARCTVARLMQKLGIQGVWRGKNKQTTHSRDDQKRADDLVKRNFSADHPDQLWVADFTYIQTNSGWVYTAFIIDVFSRAIVGWKVSTRMNTDMVLDALEQALHDRGMPKNVIHHSDRGVQYLSIRYTNRLEAANLRASVGTTGDSYDNALAETVNGLYKTEVIEYLKADWQGLADVQLATLNWVDWFNKERVHSALGYVPPFDFEAMYYDKINPLGQVA
SIO_010081: BEN71_RS00455
subclass of: SO_0000673
so part of: BEN71_RS00455
location: complement(join(5655..6598,6598..6874))
location: region:5655-6874:-1
so has part: feature:6598-6874:-1:exon
so has part: feature:5655-6598:-1:exon

WP_100249712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6598-6874:-1:exon

position:6598:-1
position: 6598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5655-6598:-1:exon

BEN71_RS00455
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 1879050
locus tag: BEN71_RS00455
old locus tag: BEN71_00455
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01497
inference: COORDINATES: profile:INFERNAL:1.1.1
note: AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: BEN71_RS00455
subclass of: SO_0000673
so part of: BEN71_RS00455
location: complement(6483..6599)
location: region:6483-6599:-1
so has part: feature:6483-6599:-1:exon

position:6483:-1
position: 6483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6599:-1
position: 6599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6483-6599:-1:exon

BEN71_RS00460
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00460
old locus tag: BEN71_00460
so part of: sequence
location: complement(7008..7769)
location: region:7008-7769:-1
so has part: feature:7008-7769:-1:exon
subclass of: SO_0000010

position:7008:-1
position: 7008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7769:-1
position: 7769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7008-7769:-1:exon

BEN71_RS00460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00460
old locus tag: BEN71_00460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017393773.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQEKAKKRGRPAQLLQIAELHAFVEFLLEKRDRSELQNQVITALQTEDFNFEMLSEAQQILVKEALKPYREHLKLQLLFDDLSKNPRQTEYEEKFLELYKGYQKDTLDPAETNILKTMCTRYLSFKAHKLELSDLELYLSQLQKKEVSKKRTAENHRKFELGGAVLAAFKELGIDISNDTPKEIQNSIRNMTKFHNNVTKSKIYQEVEKYKNGYFERNKIFIDVLNGLHTWTKEGVTLTQVEIQKVLRKNNE
SIO_010081: BEN71_RS00460
subclass of: SO_0000673
so part of: BEN71_RS00460
location: complement(7008..7769)
location: region:7008-7769:-1
so has part: feature:7008-7769:-1:exon

WP_068975478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7008-7769:-1:exon

BEN71_RS00465
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00465
old locus tag: BEN71_00465
so part of: sequence
location: 8076..9251
location: region:8076-9251:1
so has part: feature:8076-9251:1:exon
subclass of: SO_0000010

position:8076:1
position: 8076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9251:1
position: 9251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8076-9251:1:exon

BEN71_RS00465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00465
old locus tag: BEN71_00465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006582669.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MASYHFSVKSKNKGYAIQHYLYIARLMQYENVRKKSDEILEYVEPGKCMPSWVKDPIEFWKAADTFERANAKVYMEYEIALPNEFTPEQRKTLIETFLDKHIVPQQYPHSYAIHNVKSRLSGEDQPHCHIMFSLKADDSIERTAEQYFKRYNPKDPSKGGAKKIQLQDGHADYSTFLIYIRKQWENHLNDALAQHCPTVTYTLDGQDITIKNQVSADNYEKYNEIHGTLYLPEPKLGAGKQNETVEYLAEIQKIRLHNAKEREMEQKQRQQTQTHEYFYSCLNEPYTSLEVMHYLNYLAKKAKNQKELNQDFKEIIKTQKPMLQTEHWNLNRMDYQLKNSLEYPDPQIEFNPVLKSQAEQSKVIQTNQPAESTLSSIQPKPKNDDYDFGGP
SIO_010081: BEN71_RS00465
subclass of: SO_0000673
so part of: BEN71_RS00465
location: 8076..9251
location: region:8076-9251:1
so has part: feature:8076-9251:1:exon

WP_068975477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8076-9251:1:exon

BEN71_RS00470
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00470
old locus tag: BEN71_00470
so part of: sequence
location: complement(9311..9577)
location: region:9311-9577:-1
so has part: feature:9311-9577:-1:exon
subclass of: SO_0000010

position:9311:-1
position: 9311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9577:-1
position: 9577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9311-9577:-1:exon

BEN71_RS00470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00470
old locus tag: BEN71_00470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFFKENEEHILLYSKISYCDKTAYLHLLFSNGELTFKSTDLISVSYEQIYLLKENKNMAIQINPSSEKEIHNLQLLFKEAVNYESTC
SIO_010081: BEN71_RS00470
subclass of: SO_0000673
so part of: BEN71_RS00470
location: complement(9311..9577)
location: region:9311-9577:-1
so has part: feature:9311-9577:-1:exon

WP_068975476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9311-9577:-1:exon

BEN71_RS00475
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
gene: repM
locus tag: BEN71_RS00475
old locus tag: BEN71_00475
so part of: sequence
location: 10327..11256
location: region:10327-11256:1
so has part: feature:10327-11256:1:exon
subclass of: SO_0000010

position:10327:1
position: 10327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11256:1
position: 11256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10327-11256:1:exon

BEN71_RS00475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
gene: repM
locus tag: BEN71_RS00475
old locus tag: BEN71_00475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005021644.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MRDLVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDPLEVHAESYINQFNVARQTAYQALKDACKDLFARQFSYQEINKRGNVENVLSRWVSEIRYIDDEATVKLIFAPAIVPLITRLEVQFTKYELQQISNLSSAYAVRLYELLIAWRSTGQTPVIELTEFRNKIGILDDEYTRMGNFKDRVLNLAIAQINEHTDITVKYEQHKKGRNISGFSFSFKQKKGVTANANSKSSNTLDLFSKMTDAQRHLFANKLSELADMSKYSQGTESYAQFAIRIAEMLQNQEKFEELLPYLKKVGFNAK
SIO_010081: BEN71_RS00475
subclass of: SO_0000673
so part of: BEN71_RS00475
location: 10327..11256
location: region:10327-11256:1
so has part: feature:10327-11256:1:exon

WP_068975475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10327-11256:1:exon

BEN71_RS00480
type: Gene
subclass of: SO_0000704
RO_0002162: 1879050
locus tag: BEN71_RS00480
old locus tag: BEN71_00480
so part of: sequence
location: 11317..11868
location: region:11317-11868:1
so has part: feature:11317-11868:1:exon
subclass of: SO_0000010

position:11317:1
position: 11317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11868:1
position: 11868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11317-11868:1:exon

BEN71_RS00480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1879050
locus tag: BEN71_RS00480
old locus tag: BEN71_00480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005402002.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MNTTKFSVMDASKAFKKSRTTIYEAIKNGELSRDNDGLIDLSELIRVYGNPIGVQSSTRTEQVQRDAPVHVQSEVESVLKDQISLLKNQLDLANQREKSLLQHIEDLTHRIEFKGVLEPSKQEDKNQSVMQNTVNIPQPVQQTNSEVLTTPRPSENKRIPVPEHIEPEPEQRGFWSRFFKPYG
SIO_010081: BEN71_RS00480
subclass of: SO_0000673
so part of: BEN71_RS00480
location: 11317..11868
location: region:11317-11868:1
so has part: feature:11317-11868:1:exon

WP_223238911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11317-11868:1:exon