Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-3, complete sequence.
type: Entry
definition: Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-3, complete sequence.
sequence version: NZ_CP021662.1
sequence date: 2023-03-18
sequence: sequence
division: CON
label: NZ_CP021662.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07168131
keyword: RefSeq
source: Candidatus Fukatsuia symbiotica
organism: Candidatus Fukatsuia symbiotica
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Candidatus Fukatsuia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP021662.1.\nBacteria and source DNA available from Kerry M. Oliver, 120 Cedar\nStreet, 413 Biological Sciences Building, Athens, 30602,GA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-MAY-2017\nAssembly Method :: HGAP.3 v. 3\nAssembly Name :: 5D_Xtype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 290.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/18/2023 02:52:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,119\nCDSs (total) :: 3,050\nGenes (coding) :: 2,663\nCDSs (with protein) :: 2,663\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 387\nCDSs (without protein) :: 387\nPseudo Genes (ambiguous residues) :: 0 of 387\nPseudo Genes (frameshifted) :: 241 of 387\nPseudo Genes (incomplete) :: 170 of 387\nPseudo Genes (internal stop) :: 43 of 387\nPseudo Genes (multiple problems) :: 57 of 387\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 67447
topology: circular
so has quality: SO_0000988
location: 1..67447
location: region:1-67447:1
RO_0002162: 1878942

NZ_CP021662
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07168131
type: BioSample
SIO_000068: biosample

1
title: Genome sequence of Candidatus Fukatsuia symbiotica and Candidatus Hamiltonella defensa from Acyrthosiphon pisum strain 5D
author: Patel, V.A.
author: Chevignon, G.
author: Russell, J.A.
author: Oliver, K.M.
journal: Unpublished

2
title: Direct Submission
author: Patel, V.A.
author: Chevignon, G.
author: Russell, J.A.
author: Oliver, K.M.
journal: Submitted (30-MAY-2017) Department of Entomology, The University of Georgia, 120 Cedar St, Athens, GA 30602, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67447:1
position: 67447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-67447:1:source
so part of: sequence
organism: Candidatus Fukatsuia symbiotica
mol type: genomic DNA
strain: 5D
isolation source: cell culture
host: Acyrthosiphon pisum
plasmid: p5D_Fsymbiotica-3
country: USA
collection date: 2016-03

1878942
type: Taxonomy
SIO_000068: taxonomy

CCS41_RS15100
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15100
old locus tag: CCS41_14870
so part of: sequence
location: complement(join(67191..67447,1..472))
location: region:1-67447:-1
so has part: feature:1-472:-1:exon
so has part: feature:67191-67447:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67447:-1
position: 67447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-472:-1:exon

position:472:-1
position: 472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:67191-67447:-1:exon

position:67191:-1
position: 67191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCS41_RS15100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15100
old locus tag: CCS41_14870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704792.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKNCDQQGCLGVTGGSTVEISPQIILMCENSRDPWAIKDLESRFIYGNKANAALLNLPSKFDIESRLDSEIPNPTADFACNFQEHDRKVIELKQNISSLDIYTYGREQITQPYISEKSPLHNQDGKCIGVIFHIRKCHFFPTTSFIGGKLPCSLVFDPPEDLFTKDELEVVFLAIHRMSAKEIAKELDLLDRTIEKRLGNIYRKIGVSFLRQLIDYCQTKGFDRYIPPRFFKPGSKFIDYMQ
SIO_010081: CCS41_RS15100
subclass of: SO_0000673
so part of: CCS41_RS15100
location: complement(join(67191..67447,1..472))
location: region:1-67447:-1
so has part: feature:1-472:-1:exon
so has part: feature:67191-67447:-1:exon

WP_119798022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-472:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:67191-67447:-1:exon

CCS41_RS15105
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15105
old locus tag: CCS41_14875
so part of: sequence
location: complement(596..1096)
location: region:596-1096:-1
so has part: feature:596-1096:-1:exon
subclass of: SO_0000010

position:596:-1
position: 596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1096:-1
position: 1096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596-1096:-1:exon

CCS41_RS15105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15105
old locus tag: CCS41_14875
inference: COORDINATES: protein motif:HMM:NF014417.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcription termination/antitermination NusG family protein
translation: MIQWYLLQHHDRQYAIIFQQLADCNVDYYTPFYTRFIHRTDKKNLTWRKKQTPLFPGYLFIYFDVKNIHTTTLKKIPGVVGFVRRGRQIITVPETVIAALKLLPANITVKKTNEIECRNVDPAMLAEVEKIASHAEPYFRFSALINLLDEVMVKGASPTTRGNTVH
SIO_010081: CCS41_RS15105
subclass of: SO_0000673
so part of: CCS41_RS15105
location: complement(596..1096)
location: region:596-1096:-1
so has part: feature:596-1096:-1:exon

WP_162860132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:596-1096:-1:exon

CCS41_RS15110
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15110
old locus tag: CCS41_14880
so part of: sequence
location: complement(1333..1530)
location: region:1333-1530:-1
so has part: feature:1333-1530:-1:exon
subclass of: SO_0000010

position:1333:-1
position: 1333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1530:-1
position: 1530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1333-1530:-1:exon

CCS41_RS15110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15110
old locus tag: CCS41_14880
inference: COORDINATES: protein motif:HMM:NF017333.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraY domain-containing protein
translation: MESNDDSKNNGTTVTCNIDATANQLLTRSAKQSKRSKKCESELRLEDHLRKFSSISAIGITENRE
SIO_010081: CCS41_RS15110
subclass of: SO_0000673
so part of: CCS41_RS15110
location: complement(1333..1530)
location: region:1333-1530:-1
so has part: feature:1333-1530:-1:exon

WP_216824521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1333-1530:-1:exon

CCS41_RS15115
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15115
old locus tag: CCS41_14885
so part of: sequence
location: complement(1692..1985)
location: region:1692-1985:-1
so has part: feature:1692-1985:-1:exon
subclass of: SO_0000010

position:1692:-1
position: 1692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1985:-1
position: 1985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1692-1985:-1:exon

CCS41_RS15115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15115
old locus tag: CCS41_14885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705581.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator
translation: MTAFDPTQFPELREVFPELTLIQFETAMLFSLGVSQIEISALRSVSYKTVKQTLAEAKNKFEPYSLHGLLTIFHVRLTLFALQGCQKCRQLNGSEPH
SIO_010081: CCS41_RS15115
subclass of: SO_0000673
so part of: CCS41_RS15115
location: complement(1692..1985)
location: region:1692-1985:-1
so has part: feature:1692-1985:-1:exon

WP_119797985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1692-1985:-1:exon

CCS41_RS15120
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: trfA
locus tag: CCS41_RS15120
old locus tag: CCS41_14890
so part of: sequence
location: complement(2057..2947)
location: region:2057-2947:-1
so has part: feature:2057-2947:-1:exon
subclass of: SO_0000010

position:2057:-1
position: 2057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2947:-1
position: 2947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2057-2947:-1:exon

CCS41_RS15120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: trfA
locus tag: CCS41_RS15120
old locus tag: CCS41_14890
inference: COORDINATES: protein motif:HMM:NF018714.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
translation: MLKNIQDLMNPGLESLEVKQAEGLSLFEAHKAFIEASIAKEKIDKKKIIENKMIVSYLLPSCSDKVRAVPNAVLRGALFGVVGRGRRKHEDNVLKTTINGISLRYTGKQLDQSDLDVWAECFRLNQGFRLGEEIFFSSKAFLLGIGRNNGKTDRDWLYSCFRRLMGAVVEIGDGHCFYTGQLLQHWYRDEKTGKNSLVLNQKLLPFFQTQFWTGLILEQRLLLKNKSLAKWLHGFYSTHKNPFEYKVEKLMDLCGSDVVVVKTFKQKLKKALIELNSATGWECLIDENHLVHVKKK
SIO_010081: CCS41_RS15120
subclass of: SO_0000673
so part of: CCS41_RS15120
location: complement(2057..2947)
location: region:2057-2947:-1
so has part: feature:2057-2947:-1:exon

WP_119797986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2057-2947:-1:exon

CCS41_RS15835
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15835
so part of: sequence
location: complement(3313..3582)
location: region:3313-3582:-1
so has part: feature:3313-3582:-1:exon
subclass of: SO_0000010

position:3313:-1
position: 3313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3582:-1
position: 3582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3313-3582:-1:exon

CCS41_RS15835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKNQYFNSIFYSKLVSAIPLLVSAIPPIGIRYPPYWYPLSPYWYPLSPLLVSAIPLLVSAIPPIGIRYPPIGIRYPPCILNFDYNNFD
SIO_010081: CCS41_RS15835
subclass of: SO_0000673
so part of: CCS41_RS15835
location: complement(3313..3582)
location: region:3313-3582:-1
so has part: feature:3313-3582:-1:exon

WP_162860133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3313-3582:-1:exon

CCS41_RS15125
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: parM
locus tag: CCS41_RS15125
old locus tag: CCS41_14895
so part of: sequence
location: 4299..5258
location: region:4299-5258:1
so has part: feature:4299-5258:1:exon
subclass of: SO_0000010

position:4299:1
position: 4299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5258:1
position: 5258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4299-5258:1:exon

CCS41_RS15125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: parM
locus tag: CCS41_RS15125
old locus tag: CCS41_14895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001687089.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid segregation protein ParM
translation: MIKIACDDGSTNVKLAWYEAGNLKTHLSGNSFREGWKTDVFGSQKVFNYIVDGKKYTHDIGSTAAVSTTHVNYQYSTIDLLAIHHALLTSGISPQEIVLTVTLPVTEFFSEDNQPNMVNIDTKKKNVLRDITLNKGETFFIKEISVMPESLPAALASVVADEVSPLERSLIVDLGGTTLDCGLVQGAFDSVSSIKGNSEIGTSRITKAVMSALITASTPTSYYVADEIIKNHTDEDYLRRLVNDIDQIDAIKNVIKVESSSLADSVKNEISTFSSMNRIYLTGGGAEIIYPYIKQYFPNHKVNKVSDPQFALAKAIAKA
SIO_010081: CCS41_RS15125
subclass of: SO_0000673
so part of: CCS41_RS15125
location: 4299..5258
location: region:4299-5258:1
so has part: feature:4299-5258:1:exon

WP_119797987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4299-5258:1:exon

CCS41_RS15130
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15130
old locus tag: CCS41_14900
so part of: sequence
location: 5275..5658
location: region:5275-5658:1
so has part: feature:5275-5658:1:exon
subclass of: SO_0000010

position:5275:1
position: 5275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5658:1
position: 5658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5275-5658:1:exon

CCS41_RS15130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15130
old locus tag: CCS41_14900
inference: COORDINATES: protein motif:HMM:NF022241.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning/stability family protein
translation: MDNKRKKITVYLHPDMYPQDKLTESFIENIPSQMKGNFYRQSIICGAVLSTIDPRIINLLSDFFSQKVSIESVMKIIEEVTGYQSTSIDMERLEKIISEKNYPISESTISIDHQKESALQNLRKLKL
SIO_010081: CCS41_RS15130
subclass of: SO_0000673
so part of: CCS41_RS15130
location: 5275..5658
location: region:5275-5658:1
so has part: feature:5275-5658:1:exon

WP_119797988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5275-5658:1:exon

CCS41_RS15135
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15135
old locus tag: CCS41_14905
so part of: sequence
location: complement(5769..6065)
location: region:5769-6065:-1
so has part: feature:5769-6065:-1:exon
subclass of: SO_0000010

position:5769:-1
position: 5769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6065:-1
position: 6065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5769-6065:-1:exon

CCS41_RS15135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15135
old locus tag: CCS41_14905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873526.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdopterin-guanine dinucleotide biosynthesis protein MobC
translation: MALKKYYTLEQLDSAKRRLEELPDLKKQRMTGDEMLKELKAQLVKLASDKGYEAADIKSVLDSVGIKIGLKPIKEIIYAKNLAKKCHTAEKKCKHHVT
SIO_010081: CCS41_RS15135
subclass of: SO_0000673
so part of: CCS41_RS15135
location: complement(5769..6065)
location: region:5769-6065:-1
so has part: feature:5769-6065:-1:exon

WP_119797989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5769-6065:-1:exon

CCS41_RS15140
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: mobA
locus tag: CCS41_RS15140
old locus tag: CCS41_14910
so part of: sequence
location: 6350..6658
location: region:6350-6658:1
so has part: feature:6350-6658:1:exon
subclass of: SO_0000010

position:6350:1
position: 6350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6658:1
position: 6658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6350-6658:1:exon

CCS41_RS15140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: mobA
locus tag: CCS41_RS15140
old locus tag: CCS41_14910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738248.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization protein MobA
translation: MSRSEKRQRTEVLLGIRCYPEEKKQIQEKAEVAGLSVGEFLRRCALSRRIIPRTDVKLIVELSKLGGLQKHLFNEGKGVHSQAYSEILVALKKAILKIDMEV
SIO_010081: CCS41_RS15140
subclass of: SO_0000673
so part of: CCS41_RS15140
location: 6350..6658
location: region:6350-6658:1
so has part: feature:6350-6658:1:exon

WP_119797990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6350-6658:1:exon

CCS41_RS15145
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15145
old locus tag: CCS41_14915
so part of: sequence
location: 6662..8569
location: region:6662-8569:1
so has part: feature:6662-8569:1:exon
subclass of: SO_0000010

position:6662:1
position: 6662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8569:1
position: 8569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6662-8569:1:exon

CCS41_RS15145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15145
old locus tag: CCS41_14915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738249.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MIVAIQAKRRDRQSSFVQLVSYLSLRDEKKPADALKQDTLSSKKSRSKAALFNRLIDYVDRHSSPSSQQIIATLPDGSQRIKCDNVVCQTNAFSLETAAAEMNAVAANNRRCLDAVYHFILSWPEGEQPEEGHIFDSASYCLAQMGMADHQYVFALHRDTDNLHCHVAVNRIHPVSFRAANLYNDVKILHKACRTLELKYDWKPDKGCWLRDENNHIIRAQPEYKSAPRAATQLEYYEDKESFHSYVVRTCRADIKQILTGNMQAWEAVHAIFLRANVELKMKGAGLAIYNKNSPDKVPLKASRLHPLLTLAKLEPRIGPFETAPKIVEFKNENGDVTLTNYAVDSAYNPKLHLRDRDARMVRRLARAEAREDLKARYQTYKKEWKRPTVDTKNQFKTLAAEFRVRKAHVRVAMPDPLMRKLTYHILAFEREKAMAALRLQLKEERTVLKNSPENRRASYRMWVEHQALKSDKAAISQLRRWAYKVKRDDRTALLTDNVIQCAVADDIPPFRIEGFDTKINRDGAILYQKEGITQIVDRGEQIGVARPFDDRGVNMITALSLAEDKSGETLAFTGPPDYVNQACAAVPHFNAMGDKPLSLTELHQQQLAGYFPARKVKEEVEVAKPRPQPTWRPR
SIO_010081: CCS41_RS15145
subclass of: SO_0000673
so part of: CCS41_RS15145
location: 6662..8569
location: region:6662-8569:1
so has part: feature:6662-8569:1:exon

WP_119797991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6662-8569:1:exon

CCS41_RS15840
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15840
so part of: sequence
location: 8588..8746
location: region:8588-8746:1
so has part: feature:8588-8746:1:exon
subclass of: SO_0000010

position:8588:1
position: 8588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8746:1
position: 8746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8588-8746:1:exon

CCS41_RS15840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQRDTASQVDNIRRLMSFSDSVIEEEVVTLIATYSVQRAGMMGYYRTFSQMA
SIO_010081: CCS41_RS15840
subclass of: SO_0000673
so part of: CCS41_RS15840
location: 8588..8746
location: region:8588-8746:1
so has part: feature:8588-8746:1:exon

WP_205411529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8588-8746:1:exon

CCS41_RS15150
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15150
old locus tag: CCS41_14920
so part of: sequence
location: 9012..9452
location: region:9012-9452:1
so has part: feature:9012-9452:1:exon
subclass of: SO_0000010

position:9012:1
position: 9012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9452:1
position: 9452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9012-9452:1:exon

CCS41_RS15150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15150
old locus tag: CCS41_14920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011214128.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VOC family protein
translation: MKYLHTMVRVSNLDESLDFYCNKLGLVEVKRTEHEQGRFTLIFLAAPGDLNKIEISHGPMLELTYNWDTQTYLEGRYFGHLAYCVDNIYETCQRLKDTGVVINRPPRDGYMAFIRSPDNISIEFLQKGERLPKQEPWASAPNIGHW
SIO_010081: CCS41_RS15150
subclass of: SO_0000673
so part of: CCS41_RS15150
location: 9012..9452
location: region:9012-9452:1
so has part: feature:9012-9452:1:exon

WP_119798023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9012-9452:1:exon

CCS41_RS15155
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15155
old locus tag: CCS41_14925
so part of: sequence
location: 9510..11222
location: region:9510-11222:1
so has part: feature:9510-11222:1:exon
subclass of: SO_0000010

position:9510:1
position: 9510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11222:1
position: 11222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9510-11222:1:exon

CCS41_RS15155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15155
old locus tag: CCS41_14925
inference: COORDINATES: protein motif:HMM:NF021943.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSPLFGSNLSRILPLPDANETQSFSAQFSRVMNIVSQLKWNIAAPAKNFTLGSLFRSYLLPVFFLAGCAVKMTGNERLISDCSGANCGSKGSQYKGSGLGIWTYENKGKAPKALKVSLSGLEHNQVTLMFSNLSEYPQPMPKGLVNRGGNKNPVFPHYQPNMLDPIPTDVTDQRHGPVERKTWKVPQMGKNNQADKPIDFPSTLRGETTIGQFTYKLWVADQEWTSHAQKTIPYLTAMLFGTPEYPSMLKQYLDDFAVQPWGNYPNTPDNNLLIAPDLRTINMVIAPNGGGAVQFFDSEQMIKSPTSNQALVVFAGSDLFSCKGIPEGLCLDAENRDLAFALTNNLLHELTHLIHYYHRAVMLGVKQRFEPWLEEAVAASHGYVVALSRFPHTAAYNKEFTSWFSGNYVCPLNSTDGRPGTDIQDKKCSQNYYKSTQAFLVFLVQQYGTGFYRELLKANGIGIDVLDEAIRSSGGVGFNEAFRRWGSTLALPDAKHLPAGYDYKSIKVGDYFLPTVNLNDFSPFRQLLPTLPEKIEPYSHLPLVDHDQSGHYLREIEIPSGVALTVYIN
SIO_010081: CCS41_RS15155
subclass of: SO_0000673
so part of: CCS41_RS15155
location: 9510..11222
location: region:9510-11222:1
so has part: feature:9510-11222:1:exon

WP_119797992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9510-11222:1:exon

CCS41_RS15160
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15160
old locus tag: CCS41_14930
so part of: sequence
location: 11524..12090
location: region:11524-12090:1
so has part: feature:11524-12090:1:exon
subclass of: SO_0000010

position:11524:1
position: 11524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12090:1
position: 12090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11524-12090:1:exon

CCS41_RS15160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15160
old locus tag: CCS41_14930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001196199.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALLGYARVSTSHQKLTHQIVELKSAGVREDRIFTDMMSGATDEREGLQRLLGRAEKDDIIICTKMDRLGRNTADMIHIVDACYKKGIAIRFLENGLSTEGTMGKMVIQILAAVAEAERERILERTNDGRIAALAAGVKFGRKIHPRTPAALTLILQGETVNSVTDKTGISRATYFRLKRKIKNDAKN
SIO_010081: CCS41_RS15160
subclass of: SO_0000673
so part of: CCS41_RS15160
location: 11524..12090
location: region:11524-12090:1
so has part: feature:11524-12090:1:exon

WP_119797993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11524-12090:1:exon

CCS41_RS15165
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15165
old locus tag: CCS41_14935
so part of: sequence
location: 12247..13269
location: region:12247-13269:1
so has part: feature:12247-13269:1:exon
subclass of: SO_0000010

position:12247:1
position: 12247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13269:1
position: 13269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12247-13269:1:exon

CCS41_RS15165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15165
old locus tag: CCS41_14935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011144720.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS630 family transposase
translation: MKIELTADQKITLEAQHRQSHDRRVCDRIRCVLLSADGWTPPMIAHSQLINETTVRRHLTDYHKLNKLKPENGGSDGYLNAEQTTSLVEHLTQPLYHHNHQIVAYIAGRWNITFTVSGLYKGLKQHGFSYKKPKGVPHKFAVEKQQQFIKTYSELKDAAGNDPILFIDAVHPTQTTKISYGWIRKGQDKTIETTGSRTRLNIMGALNIQNVANPIIRDDETINSENVVHFLSAIRAHYPITTTAHVILEGAGYHRSQLVQDAALTLNIQLHYLPPYSPNLNPIERLWKVMNEQTRNNRYYPSKQSFKNDILNFFEVKLPQMVSSLVSRLNDNFQALNPAS
SIO_010081: CCS41_RS15165
subclass of: SO_0000673
so part of: CCS41_RS15165
location: 12247..13269
location: region:12247-13269:1
so has part: feature:12247-13269:1:exon

WP_119797994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12247-13269:1:exon

CCS41_RS15170
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15170
old locus tag: CCS41_14940
so part of: sequence
location: complement(13272..13478)
location: region:13272-13478:-1
so has part: feature:13272-13478:-1:exon
subclass of: SO_0000010

position:13272:-1
position: 13272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13478:-1
position: 13478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13272-13478:-1:exon

CCS41_RS15170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15170
old locus tag: CCS41_14940
inference: COORDINATES: protein motif:HMM:NF013752.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MTNLTATDAFEAEEKVNWYRLRWKIEEFFKTLKSGCCVEQCRLNTATKLTKMITLKSIIAFKLMYIPK
SIO_010081: CCS41_RS15170
subclass of: SO_0000673
so part of: CCS41_RS15170
location: complement(13272..13478)
location: region:13272-13478:-1
so has part: feature:13272-13478:-1:exon

WP_162860135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13272-13478:-1:exon

CCS41_RS15175
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15175
old locus tag: CCS41_14945
so part of: sequence
location: complement(13499..14512)
location: region:13499-14512:-1
so has part: feature:13499-14512:-1:exon
subclass of: SO_0000010

position:13499:-1
position: 13499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14512:-1
position: 14512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13499-14512:-1:exon

CCS41_RS15175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15175
old locus tag: CCS41_14945
inference: COORDINATES: protein motif:HMM:NF033590.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS4 family transposase
translation: MKNDSGEIGLLVESIVKSGNRHMKTVTGNGNEWIREEFHQIDFGDKRLKERFFETAGLLSSKASGSIYPSCHGSWSQAKGAYRFFSNERVSESALFRTHCVQTQKRLEGHSLVFSLQDTSELNFDSHKKTEGLGSISKAYHKHKMGLMLHASLMVTQEGLPLGLSSLKCWSRVSREETPQEKQRRLYQSTMKEKESIKWIETLYETAALIPKDTCLITLGDREADIFELFRVASSLKTFFIIRNRKDRKFIDEKGKKTTVQTALSKTPILKTIALTLPKNQQRVARTAYVDIRSISGWLPIRNNLVYGPPIKTLHGISMKRFTYLPSVLKNSLLQKE
SIO_010081: CCS41_RS15175
subclass of: SO_0000673
so part of: CCS41_RS15175
location: complement(13499..14512)
location: region:13499-14512:-1
so has part: feature:13499-14512:-1:exon

WP_119797996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13499-14512:-1:exon

CCS41_RS15180
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15180
old locus tag: CCS41_14950
so part of: sequence
location: 14930..15889
location: region:14930-15889:1
so has part: feature:14930-15889:1:exon
subclass of: SO_0000010

position:14930:1
position: 14930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15889:1
position: 15889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14930-15889:1:exon

CCS41_RS15180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15180
old locus tag: CCS41_14950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705839.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MDKTSVGIDVAKLKFDVAVWVERKKYKTKAFPNTPSGFSQLLKWLIPYGDCHICLEATGSYSVPLAMFLVDNGIDVSLENPSRIHAFGESELSRNKTDQGDAKMIVRYCALHTPVLWTPPPLSERQLTALVRHLKSLEEMRQMQENRQSVADDVVQSSLLEIISALKQQIQATKEKIKNHIDNDPDLKKNKALLESIPGIGEILSASLLAYVGNVSKFTNSKAVVAYAGLNPKLCESGLFKGRSRLSKRGHTELRKALYMPALAALSCNPIVKAQWQRLVSRHKGGKMGVCAAMRKLLQLAYGVLKSGIPFDTKIALAS
SIO_010081: CCS41_RS15180
subclass of: SO_0000673
so part of: CCS41_RS15180
location: 14930..15889
location: region:14930-15889:1
so has part: feature:14930-15889:1:exon

WP_162859989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14930-15889:1:exon

CCS41_RS15185
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15185
old locus tag: CCS41_14955
pseudo: true
so part of: sequence
location: <15907..>16491
location: region:15907-16491:1
so has part: feature:15907-16491:1:exon
subclass of: SO_0000010

position:15907:1
position: 15907
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:16491:1
position: 16491
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15907-16491:1:exon

CCS41_RS15185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15185
old locus tag: CCS41_14955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014543172.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: CCS41_RS15185
subclass of: SO_0000673
so part of: CCS41_RS15185
location: <15907..>16491
location: region:15907-16491:1
so has part: feature:15907-16491:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15907-16491:1:exon

CCS41_RS15190
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15190
old locus tag: CCS41_14960
so part of: sequence
location: 16601..16807
location: region:16601-16807:1
so has part: feature:16601-16807:1:exon
subclass of: SO_0000010

position:16601:1
position: 16601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16807:1
position: 16807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16601-16807:1:exon

CCS41_RS15190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15190
old locus tag: CCS41_14960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707088.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6500 family protein
translation: MRASIREKIVKVCEAKIAAKGDNVGVSFYAFFANKNDDPELLMEVAHWWIMEMKLDHFEKARKIISLV
SIO_010081: CCS41_RS15190
subclass of: SO_0000673
so part of: CCS41_RS15190
location: 16601..16807
location: region:16601-16807:1
so has part: feature:16601-16807:1:exon

WP_119797874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16601-16807:1:exon

CCS41_RS15195
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15195
old locus tag: CCS41_14965
so part of: sequence
location: complement(16809..17456)
location: region:16809-17456:-1
so has part: feature:16809-17456:-1:exon
subclass of: SO_0000010

position:16809:-1
position: 16809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17456:-1
position: 17456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16809-17456:-1:exon

CCS41_RS15195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15195
old locus tag: CCS41_14965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012439747.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MFIRAYLRASTEEQYADRAKEMLEQFVQERGHKIASYYRENVSGTKLDRPELGRLLMDSHHNDILLVEQIDRLTRLSNSDWMTLKKQIEQHELRIVSLDVPTSWHALSDKESSQNDPITRAVITAINNMLIDLMAAMSHKDWLSRRQRQKQGIERAHTLGKYRGKQADGERHQKVMYYRQVKKLSIRETTEATGYSASQVCRIQALYRQNKSEVD
SIO_010081: CCS41_RS15195
subclass of: SO_0000673
so part of: CCS41_RS15195
location: complement(16809..17456)
location: region:16809-17456:-1
so has part: feature:16809-17456:-1:exon

WP_119797432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16809-17456:-1:exon

CCS41_RS15200
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15200
old locus tag: CCS41_14970
pseudo: true
so part of: sequence
location: 17625..20611
location: region:17625-20611:1
so has part: feature:17625-20611:1:exon
subclass of: SO_0000010

position:17625:1
position: 17625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20611:1
position: 20611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17625-20611:1:exon

CCS41_RS15200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15200
old locus tag: CCS41_14970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: CCS41_RS15200
subclass of: SO_0000673
so part of: CCS41_RS15200
location: 17625..20611
location: region:17625-20611:1
so has part: feature:17625-20611:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17625-20611:1:exon

CCS41_RS15845
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15845
old locus tag: CCS41_14975
so part of: sequence
location: complement(20586..22106)
location: region:20586-22106:-1
so has part: feature:20586-22106:-1:exon
subclass of: SO_0000010

position:20586:-1
position: 20586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22106:-1
position: 22106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20586-22106:-1:exon

CCS41_RS15845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15845
old locus tag: CCS41_14975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPIQQTAEMTQPEMAFSDAHSPVYYTGKTKAAIPHFKRSVNYLKFKQEYEQSIQSIIDFYNQHAPNLGQDEITTDLPESLRKKSTVENMFMQFKMALFDVKNFDRLHHLYQAKRPIEEIAQSLQEEGSIPTVTKLDEIRELARKIMMCGSGVHSHIIGTKLSLTGSSGELSDNFSAYKNTIAHAVITESTSRHFINPFYEIHVFNEYWNHFSKILGIASIEDKSYANFFTNGADIQACQNALQQALTPFNITDKLATDHWNNLRSVIGDATEWGQINDILAGLKSSYKPINVYSLIEESVDSPDKYRLRQDKTWLQVEIARQLSLLPSQISWLNWTPIAVEGNRLLRIGDLFWQEIDGELSPPKIEDLVGYAGQVAYAQLIDGIARAKEQDAIWLSELDPQYLQVTNTKDIALFFSKLGDERFIRYAMNNLNWFKKLTVPAPLLIKTLSKISDGEVANIDTGFLYSMSLKEIKKFFEYWESNAIKPWRAPFGKRKILYVKMIFCTD
SIO_010081: CCS41_RS15845
subclass of: SO_0000673
so part of: CCS41_RS15845
location: complement(20586..22106)
location: region:20586-22106:-1
so has part: feature:20586-22106:-1:exon

WP_162860136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20586-22106:-1:exon

CCS41_RS15215
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15215
old locus tag: CCS41_14980
so part of: sequence
location: complement(22127..22783)
location: region:22127-22783:-1
so has part: feature:22127-22783:-1:exon
subclass of: SO_0000010

position:22127:-1
position: 22127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22783:-1
position: 22783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22127-22783:-1:exon

CCS41_RS15215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15215
old locus tag: CCS41_14980
inference: COORDINATES: protein motif:HMM:NF024321.2
GO function: GO:0016757 - glycosyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TcdA/TcdB catalytic glycosyltransferase domain-containing protein
translation: MEKKQLINEIRNSKLVFPDRIRFIINEYQALAIPAGYQELCLLARLQTGLEQRLKKEYKLINVQLRLKIKTILQAVLERKMILLTPVEKKIHFIWIGNMGVKQIAYMKAWVYYNPDYEINLWHDPGALLADVLRQRIKRQAGMLLGIGNDIGPDSIASLSIRAPPAAGVMPVDYYVVRTSRPVIKIASDRSWNSSLWPAKWGVTPCRHLARNLTTTPI
SIO_010081: CCS41_RS15215
subclass of: SO_0000673
so part of: CCS41_RS15215
location: complement(22127..22783)
location: region:22127-22783:-1
so has part: feature:22127-22783:-1:exon

WP_162860137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22127-22783:-1:exon

CCS41_RS15220
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15220
old locus tag: CCS41_14985
so part of: sequence
location: complement(22941..27002)
location: region:22941-27002:-1
so has part: feature:22941-27002:-1:exon
subclass of: SO_0000010

position:22941:-1
position: 22941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27002:-1
position: 27002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22941-27002:-1:exon

CCS41_RS15220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15220
old locus tag: CCS41_14985
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQKITVPGALASTDTVRPDYFSEVLINQFNQSSPLAINILAAKQTNEQIWQSLPLANKVKYIIYLAYKNNSSQTEIKLLLQTLSWSAEEIENNWHNISPSILHYIEYALQLSSALYDIPGMPFITALASFDNHIVQGVNTRMINWPAATLDRAQLYSLMQTLSQWINWNKIKNKPLTTTEALLGVIDYYDPHYALSDILAEYDKKYQAIVDQAVLLYSLSQAENSLFNMDLPALRHAFIAVVEKEEGEKKILDQLFINTNAIDETDNTPVIAFDGFAFKYALGKTFSDLANELKKLSVFFFLTDTEQTRILEKKLLAIEESKQYVIGTVQHSLASSVIRINQHHNQPVIDHWQSDQALLKEFKALIQHWNQHKHYPLHPFLLFSLHLAQSCRIDFKQDAAPQKTATLLQDAHERLLAVFGEPPHFDLRQATGEILSNYDLNQEEMQQIHEYIILQSHLITLPSPAVMTGDYFQEFWHRAQRGYDLLNRDIRLPARSVNAPAELSAKWQHFIAQLPNNPWFRAKAKDNLIMCKQSLNTDGIQQEIDHLLTTCRQDQCRLQLDPITQFTVGDVFEELINLIPVVGAAYNIEQGIRHHDWLQTLIGTLALGFDGASLLYNGLKNGISETEVNFHSLMENDKKVISTVSRATSQVTDLPITHWTDNIEAITIKPDPYDLALPRARIPLSFQEQALHVRQGAQGIKWKDYSLVYVINQDRVMPIKNSKGGFFYEVDWQTEKPNYANRITREAGGKYYSKLSLKGGGHYQRKATSAYLNAWFWHLGDSVTVNTVSRFLSKAKNTRRFPHFDNLFHARFELALERGQSPSILIQIYHTMYSRSPTFRRLFNYAVDFLNKTFQIKITSTLSPQFNVHKGQIKFPSASTLPLMPQYVNLLGTSAEFSAARIYLHEMLHVLSDLEDPMPGLASVFNRGPIVYFTERILFEAGEVSPGRLSYEVSLNDTFLPTDPDVVDDILSTEGMDDAALSTPTEENDQPRSLISSNYLSASSNSSTTIDVTQLSPRKSIPPEPLASSSDMMNLVIKKIITEDLELDLTLDASVDNSRVEPTAHTVILGYELNRHRTVFDAIKYKKHFNEMNDPLLSRIGTYFHSVFNSNISEIKNTSWSRLGRITSQYLLRHPPSLKIRLKNIVENCYYYRKTFRKILLFAKTELAKSLQEIKWTFILDKKYTENYLVDNAQCILINQDEHSITLRHHQAFAYLSSTGIQPLSLERQVISALVSLCLKDTKFPSDHLQIEKIGRGISVYLSNKILQEAGYQQPIQLTEDLLPLYVLDGHQGETLLKKMKTKWQANHQDQMTELNILNASLLELQNKLLAKTTTARRLAEIQDRYLATLEK
SIO_010081: CCS41_RS15220
subclass of: SO_0000673
so part of: CCS41_RS15220
location: complement(22941..27002)
location: region:22941-27002:-1
so has part: feature:22941-27002:-1:exon

WP_119797999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22941-27002:-1:exon

CCS41_RS15225
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15225
old locus tag: CCS41_14990
so part of: sequence
location: 28128..29516
location: region:28128-29516:1
so has part: feature:28128-29516:1:exon
subclass of: SO_0000010

position:28128:1
position: 28128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29516:1
position: 29516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28128-29516:1:exon

CCS41_RS15225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15225
old locus tag: CCS41_14990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006706098.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MQSVKVDITSIQQLDLAPLTKNQKSLICMVIIGNILEFFDLFLVGFVITLLMQDQQWSLNAIQSGFILAGAGLGTVIGAIAWGWFADKYGRKKSFISCILMLVIFTGLSALTPENSWVFLSIMRICVGIAVGGINVTSVPYVQEFVPSKKRGLFAGLTSAFIPLGLFLGSLTTLYLAEPLGWRGLLIIGCIPIVLLAWTKFIPESPRYLVSKGRFQNAREAYAWAMNIPVTKVGDLPEYVSAPKPSYLKIIKDYPKQLTIVAIGSFCFIFGSFVIQSWGQVLLNKSFHFSIHMVANLFMILSLGDLVGRLLSAWVSDYLGRRWTLFVCGLIGALGCTIAALSIQITTIMHFFSLNITSSGWIFFVGIFIAMMFGDGAFSIINVFGGEMFPNHIRSTCLGLGYGVGATAKIIGPIFLGAIIGSEKLSEDVVLVPFLIFAFIFFIGSIVYLFAQETRNIQLEDI
SIO_010081: CCS41_RS15225
subclass of: SO_0000673
so part of: CCS41_RS15225
location: 28128..29516
location: region:28128-29516:1
so has part: feature:28128-29516:1:exon

WP_119798000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28128-29516:1:exon

CCS41_RS15230
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15230
old locus tag: CCS41_14995
so part of: sequence
location: complement(29738..30760)
location: region:29738-30760:-1
so has part: feature:29738-30760:-1:exon
subclass of: SO_0000010

position:29738:-1
position: 29738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30760:-1
position: 30760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29738-30760:-1:exon

CCS41_RS15230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15230
old locus tag: CCS41_14995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011144720.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS630 family transposase
translation: MKIELTADQKITLEAQHRQSHDRRVCDRIRCVLLSADGWTPPMIAHSQLINETTVRRHLTDYHKLNKLKPENGGSDGYLNAEQTTSLVEHLTQQLYHHNHQIVAYIAGRWNITFTVSGLYKGLKQHGFSYKKPKGVPHKFAVEKQPQFIKTYSELKDAAGNDPILFIDAVHPTQAAKISYGWIRKGQDKTIETTGSRTRLNIMGALNIQNVANPIIRDDETINSENVVHFLSAIRAHYPITTTAHVILEGAGYHRSQLVQDAALTLNIQLHYLPPYSPNLNPIERLWKVMNEQTRNNRYYPSKQSFKNDILNFFEVKLPQMASSLVSRLNDNFQALNPAS
SIO_010081: CCS41_RS15230
subclass of: SO_0000673
so part of: CCS41_RS15230
location: complement(29738..30760)
location: region:29738-30760:-1
so has part: feature:29738-30760:-1:exon

WP_119797794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29738-30760:-1:exon

CCS41_RS16200
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16200
pseudo: true
so part of: sequence
location: <30822..30950
location: region:30822-30950:1
so has part: feature:30822-30950:1:exon
subclass of: SO_0000010

position:30822:1
position: 30822
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:30950:1
position: 30950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30822-30950:1:exon

CCS41_RS16200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16200
inference: COORDINATES: similar to AA sequence:RefSeq:NP_462554.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
SIO_010081: CCS41_RS16200
subclass of: SO_0000673
so part of: CCS41_RS16200
location: <30822..30950
location: region:30822-30950:1
so has part: feature:30822-30950:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30822-30950:1:exon

CCS41_RS15235
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15235
old locus tag: CCS41_15000
so part of: sequence
location: complement(30947..31327)
location: region:30947-31327:-1
so has part: feature:30947-31327:-1:exon
subclass of: SO_0000010

position:30947:-1
position: 30947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31327:-1
position: 31327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30947-31327:-1:exon

CCS41_RS15235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15235
old locus tag: CCS41_15000
inference: COORDINATES: protein motif:HMM:NF024751.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKGKRCYGQHDWHVKARTHVIGAQLNGTLTTVCTFDCHINSDIFYAWVTQDLLPKSPPGAVLVMDNVSFHKRQDIQSARQKAGFILEYLPTYSPDMNPIEHKWAQAKALRRKRQCDIDTLFSDPLF
SIO_010081: CCS41_RS15235
subclass of: SO_0000673
so part of: CCS41_RS15235
location: complement(30947..31327)
location: region:30947-31327:-1
so has part: feature:30947-31327:-1:exon

WP_240313963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30947-31327:-1:exon

CCS41_RS15240
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15240
old locus tag: CCS41_15005
so part of: sequence
location: complement(31498..31770)
location: region:31498-31770:-1
so has part: feature:31498-31770:-1:exon
subclass of: SO_0000010

position:31498:-1
position: 31498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31770:-1
position: 31770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31498-31770:-1:exon

CCS41_RS15240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15240
old locus tag: CCS41_15005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707191.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS630 transposase-related protein
translation: MTYPLKFRQHVLAIKKQEKLTYAETATRFCVGIASLMRWAKRIDPFLTRNKPATKINRAALLLDVETYPDASQYERAQRMRAVLEGSAMR
SIO_010081: CCS41_RS15240
subclass of: SO_0000673
so part of: CCS41_RS15240
location: complement(31498..31770)
location: region:31498-31770:-1
so has part: feature:31498-31770:-1:exon

WP_162860138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31498-31770:-1:exon

CCS41_RS16955
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16955
so part of: sequence
location: complement(31919..32095)
location: region:31919-32095:-1
so has part: feature:31919-32095:-1:exon
subclass of: SO_0000010

position:31919:-1
position: 31919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32095:-1
position: 32095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31919-32095:-1:exon

CCS41_RS16955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16955
inference: COORDINATES: protein motif:HMM:NF014814.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNPTAIEKAAIAEALYKNGTIPVKKIAEQLAISKTTLYLYLRSRGVVIGEKTERVVTR
SIO_010081: CCS41_RS16955
subclass of: SO_0000673
so part of: CCS41_RS16955
location: complement(31919..32095)
location: region:31919-32095:-1
so has part: feature:31919-32095:-1:exon

WP_240313964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31919-32095:-1:exon

CCS41_RS16960
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16960
so part of: sequence
location: complement(32092..32502)
location: region:32092-32502:-1
so has part: feature:32092-32502:-1:exon
subclass of: SO_0000010

position:32092:-1
position: 32092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32502:-1
position: 32502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32092-32502:-1:exon

CCS41_RS16960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16960
inference: COORDINATES: protein motif:HMM:NF012464.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MITLHGACYSFRRGLMKQAGCTQIVEEIASGAKTARPVLDEIMRNLREEDTLVVWKLDRLGRNLAHLIHLTTQLLEKKVGLISLNDPIDTTTAQGRLIFGIFASLAEFERELIRERTQAGLKSARARGRKGGALKE
SIO_010081: CCS41_RS16960
subclass of: SO_0000673
so part of: CCS41_RS16960
location: complement(32092..32502)
location: region:32092-32502:-1
so has part: feature:32092-32502:-1:exon

WP_240313965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32092-32502:-1:exon

CCS41_RS15250
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15250
old locus tag: CCS41_15015
so part of: sequence
location: 32627..33450
location: region:32627-33450:1
so has part: feature:32627-33450:1:exon
subclass of: SO_0000010

position:32627:1
position: 32627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33450:1
position: 33450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32627-33450:1:exon

CCS41_RS15250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15250
old locus tag: CCS41_15015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_041621276.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MKYEQIKVLEEEKFRRLTGVKRSTFEKMIKILNEADKCKQGKGGRKPKLGLEDRLLMALEYLREYRTYFHVSRSDGVSESTCYETIKWIENTLIKHPDFALPGRKALLKSDREYELVLIDATETPIERPPKKQKQFYSGKKKRPTLKTQVIVDKKSKAVICTSFTHGRRHDFRLFKESGVRIHPEIKTVTDTGYQGLGKIHSNSALPKKKTKKNPLTKEDKRNNRELSSQRVLNENVIGMIKRFKIVSDRYRNRRKRFGLRFNLIAAIYNMEIR
SIO_010081: CCS41_RS15250
subclass of: SO_0000673
so part of: CCS41_RS15250
location: join(32627..33014,33014..33450)
location: region:32627-33450:1
so has part: feature:32627-33014:1:exon
so has part: feature:33014-33450:1:exon

WP_240313793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32627-33014:1:exon

position:33014:1
position: 33014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:33014-33450:1:exon

CCS41_RS15255
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15255
old locus tag: CCS41_15020
so part of: sequence
location: 33487..33816
location: region:33487-33816:1
so has part: feature:33487-33816:1:exon
subclass of: SO_0000010

position:33487:1
position: 33487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33816:1
position: 33816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33487-33816:1:exon

CCS41_RS15255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15255
old locus tag: CCS41_15020
inference: COORDINATES: protein motif:HMM:NF022835.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotI/IcmL/TraM family protein
translation: MSAIASRFSDEGFTSYYQALTQSNVLAAVRDKKMNLAVMVAPGVVRQKGPLSNGVYAWEIQYPVTLKLAGQTTSLPEQRFIFSLFIQRADVRDKLNGLEVTQLVTFDAK
SIO_010081: CCS41_RS15255
subclass of: SO_0000673
so part of: CCS41_RS15255
location: 33487..33816
location: region:33487-33816:1
so has part: feature:33487-33816:1:exon

WP_240313966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33487-33816:1:exon

CCS41_RS15260
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15260
old locus tag: CCS41_15025
so part of: sequence
location: complement(33876..34148)
location: region:33876-34148:-1
so has part: feature:33876-34148:-1:exon
subclass of: SO_0000010

position:33876:-1
position: 33876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34148:-1
position: 34148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33876-34148:-1:exon

CCS41_RS15260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15260
old locus tag: CCS41_15025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013033472.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MTWKVELSTLARKNLGDLDKQIAKRILRFLHDRIAKLENPRDVGDALKGIKLGVFWKYRVGDYRIIADIQDRELIILVVRIGNRREVYKR
SIO_010081: CCS41_RS15260
subclass of: SO_0000673
so part of: CCS41_RS15260
location: complement(33876..34148)
location: region:33876-34148:-1
so has part: feature:33876-34148:-1:exon

WP_119798001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33876-34148:-1:exon

CCS41_RS15265
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15265
old locus tag: CCS41_15030
so part of: sequence
location: complement(34132..34356)
location: region:34132-34356:-1
so has part: feature:34132-34356:-1:exon
subclass of: SO_0000010

position:34132:-1
position: 34132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34356:-1
position: 34356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34132-34356:-1:exon

CCS41_RS15265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15265
old locus tag: CCS41_15030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514724.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MLAIRLPQEIENRLKKLADVTGRSKTFYAREAILEHLDDLEDIYLAEHELEEVRAGRSVPVSLEEVMKQYDLES
SIO_010081: CCS41_RS15265
subclass of: SO_0000673
so part of: CCS41_RS15265
location: complement(34132..34356)
location: region:34132-34356:-1
so has part: feature:34132-34356:-1:exon

WP_119798024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34132-34356:-1:exon

CCS41_RS16965
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16965
old locus tag: CCS41_15035
so part of: sequence
location: 34443..34685
location: region:34443-34685:1
so has part: feature:34443-34685:1:exon
subclass of: SO_0000010

position:34443:1
position: 34443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34685:1
position: 34685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34443-34685:1:exon

CCS41_RS16965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16965
old locus tag: CCS41_15035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNDDENPSLFLLLLVSLTGHAMAAESNNHWQSATSASTASLPPVPPKDQEPLATLHLPSAALSYAQEQATPLSGAEIEN
SIO_010081: CCS41_RS16965
subclass of: SO_0000673
so part of: CCS41_RS16965
location: 34443..34685
location: region:34443-34685:1
so has part: feature:34443-34685:1:exon

WP_119798002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34443-34685:1:exon

CCS41_RS15275
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15275
old locus tag: CCS41_15040
so part of: sequence
location: 34682..35404
location: region:34682-35404:1
so has part: feature:34682-35404:1:exon
subclass of: SO_0000010

position:34682:1
position: 34682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35404:1
position: 35404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34682-35404:1:exon

CCS41_RS15275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15275
old locus tag: CCS41_15040
inference: COORDINATES: protein motif:HMM:NF023713.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotH/IcmK family type IV secretion protein
translation: MSRAADAASRGRAYQPRVTLPRISTLTVNLSPGASVPILRTAADQTSSVTFADSTGAPWKLGAPPFNSNNKGFQVSYIPGSAMMAVQALRRYDTGNVTVYLEGLAVPVVVNLTSGEPDNSSSTQIMDSRLDLRLPQRGPDAKPMAQPESKIVLYNTVLQAFLDGMPPLEAKRLRTNGNLASTTVWQLGDELYIRSRSEIRDEFEQTLSSLDGTHLWKLPLTPYVNFSVMGRTEPLTIHLE
SIO_010081: CCS41_RS15275
subclass of: SO_0000673
so part of: CCS41_RS15275
location: 34682..35404
location: region:34682-35404:1
so has part: feature:34682-35404:1:exon

WP_119798003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34682-35404:1:exon

CCS41_RS15280
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: traO
locus tag: CCS41_RS15280
old locus tag: CCS41_15045
so part of: sequence
location: 35408..36619
location: region:35408-36619:1
so has part: feature:35408-36619:1:exon
subclass of: SO_0000010

position:35408:1
position: 35408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36619:1
position: 36619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35408-36619:1:exon

CCS41_RS15280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: traO
locus tag: CCS41_RS15280
old locus tag: CCS41_15045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873477.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraO
translation: MPIEKELALDTSKSLILIVIGVVVLGFAIYLGYSLYNKPAEAQSNYAIDSVAANVGRHTTESAQYRELLEKYNATEAAKAREEGQSFVARIREGAIDPGEKKQPGRPPDKLNTVPPETSGERSVAADNSGLSENRRKAIDSLLQDLNGQWQPVPFQLASRIEGGEGNKGDTFTAWTASLAPKYKDTPHFAGREIADTEIVAPYTRVPGVIETAVDSDNPDSQVLAAIPSGRYAGAQLHARRVQLAGDGVTIHFERMNWRGQTYTVDAYALSDETLQSSVASDVNHRYFSRIILPAIAMGLGRTGQLFEQSSTQNMITPQGSVIQTRPAIPSGSAIAGTVVGGIGNQAGQVMTSDAARLPIKQATINRGQIIAIQFIGGVYEANNVRRQTESGSQQQPSTGRAP
SIO_010081: CCS41_RS15280
subclass of: SO_0000673
so part of: CCS41_RS15280
location: 35408..36619
location: region:35408-36619:1
so has part: feature:35408-36619:1:exon

WP_119798004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35408-36619:1:exon

CCS41_RS15285
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: traP
locus tag: CCS41_RS15285
old locus tag: CCS41_15050
so part of: sequence
location: 36616..37371
location: region:36616-37371:1
so has part: feature:36616-37371:1:exon
subclass of: SO_0000010

position:36616:1
position: 36616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37371:1
position: 37371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36616-37371:1:exon

CCS41_RS15285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: traP
locus tag: CCS41_RS15285
old locus tag: CCS41_15050
inference: COORDINATES: protein motif:HMM:NF033885.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraP
translation: MKREKTDLFNFDTVDTNDNEGSNRISEPEILMETVSQPKRWFGLGLRDLLILAVCVILGVAYLFWPNTQVQQSSARFAPSEPKAWNSAYQKTEPGVSTMPLVVDPNTLSVAAEALTTFKKEIATILEARRSFAEENREAIGALSERLELANQQVKQLERQLSDMAIRLESVRTQPAASKQRVSTPVKKRTQNPQRASTDGYQINTLWQGMAWVSYKGSIHAVREGDTLGKLKIKHIDVSKRKIETSAGIIR
SIO_010081: CCS41_RS15285
subclass of: SO_0000673
so part of: CCS41_RS15285
location: 36616..37371
location: region:36616-37371:1
so has part: feature:36616-37371:1:exon

WP_119798005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36616-37371:1:exon

CCS41_RS15850
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15850
so part of: sequence
location: 37382..37576
location: region:37382-37576:1
so has part: feature:37382-37576:1:exon
subclass of: SO_0000010

position:37382:1
position: 37382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37576:1
position: 37576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37382-37576:1:exon

CCS41_RS15850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTDLIQMLVNFSRNITQSGINLVMTLAVVMGIVSAIVYLLRFARPKSHRGPAQSRASVKCCCF
SIO_010081: CCS41_RS15850
subclass of: SO_0000673
so part of: CCS41_RS15850
location: 37382..37576
location: region:37382-37576:1
so has part: feature:37382-37576:1:exon

WP_162860139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37382-37576:1:exon

CCS41_RS15290
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: traQ
locus tag: CCS41_RS15290
old locus tag: CCS41_15055
so part of: sequence
location: 37561..37923
location: region:37561-37923:1
so has part: feature:37561-37923:1:exon
subclass of: SO_0000010

position:37561:1
position: 37561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37923:1
position: 37923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37561-37923:1:exon

CCS41_RS15290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: traQ
locus tag: CCS41_RS15290
old locus tag: CCS41_15055
inference: COORDINATES: protein motif:HMM:NF033883.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraQ
translation: MLLFLMLCGGLIALKQMMNASAHQLGFGDVTFDAIAYVSSTKYGPAAEAINAVLTLLRLLGVIFFYQGMRRMKRSLVDGHTGLTAGEDVSNGVIKLLIGPLLICNPYFLTALQNTFNIVW
SIO_010081: CCS41_RS15290
subclass of: SO_0000673
so part of: CCS41_RS15290
location: 37561..37923
location: region:37561-37923:1
so has part: feature:37561-37923:1:exon

WP_162860140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37561-37923:1:exon

CCS41_RS15295
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15295
old locus tag: CCS41_15060
so part of: sequence
location: 37991..38386
location: region:37991-38386:1
so has part: feature:37991-38386:1:exon
subclass of: SO_0000010

position:37991:1
position: 37991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38386:1
position: 38386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37991-38386:1:exon

CCS41_RS15295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15295
old locus tag: CCS41_15060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873079.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraR conjugal transfer protein
translation: MRTFNHPVLFVCTHLSLAAERLSQKMAQGIIALIGLCTAQMASADEDIAGMVNSITSGITSVKPGLLLAAQVAGIGCVIAGIFLWLRKKNDPHVKGSHIAIFIGIGCILIALDQFISRGQKQAGFRPVSVG
SIO_010081: CCS41_RS15295
subclass of: SO_0000673
so part of: CCS41_RS15295
location: 37991..38386
location: region:37991-38386:1
so has part: feature:37991-38386:1:exon

WP_119798006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37991-38386:1:exon

CCS41_RS15300
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15300
old locus tag: CCS41_15065
so part of: sequence
location: 38435..39013
location: region:38435-39013:1
so has part: feature:38435-39013:1:exon
subclass of: SO_0000010

position:38435:1
position: 38435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39013:1
position: 39013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38435-39013:1:exon

CCS41_RS15300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15300
old locus tag: CCS41_15065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraT conjugal transfer protein
translation: MLVFSLLRETWGQAPQKSISVSLSRQAHTNSQQQCEFCGYTSKNNRLHFVDHNPLNHRSDNLTVVDPLCEAWQNLRALNADDGFVVYLPEIRPEDVDHLQRTAILALQSADPIYRDAAKTVINWLAAHKKEVEAFWGTAHPGEFAEALMQAGGEQRTELQNRWRHLALILNPQKFTGKDIFADDGPELDTAK
SIO_010081: CCS41_RS15300
subclass of: SO_0000673
so part of: CCS41_RS15300
location: 38435..39013
location: region:38435-39013:1
so has part: feature:38435-39013:1:exon

WP_119798007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38435-39013:1:exon

CCS41_RS15305
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: vapC
locus tag: CCS41_RS15305
old locus tag: CCS41_15070
so part of: sequence
location: complement(39042..39461)
location: region:39042-39461:-1
so has part: feature:39042-39461:-1:exon
subclass of: SO_0000010

position:39042:-1
position: 39042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39461:-1
position: 39461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39042-39461:-1:exon

CCS41_RS15305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: vapC
locus tag: CCS41_RS15305
old locus tag: CCS41_15070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009408500.1
GO function: GO:0004540 - ribonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA(fMet)-specific endonuclease VapC
translation: MLKYMLDTNICIFTIKNKPQEVRATFDRHHGQLCISTVTLMELIYGAEKSHSAEKNLRVIEGFVARLEVLNYTQKAAADSGQLRAELANNGTPIGPYDQMIAGHARSQGLILVTNNLREFERVPGLRVEDWVINNTKID
SIO_010081: CCS41_RS15305
subclass of: SO_0000673
so part of: CCS41_RS15305
location: complement(39042..39461)
location: region:39042-39461:-1
so has part: feature:39042-39461:-1:exon

WP_119798008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39042-39461:-1:exon

CCS41_RS15310
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: vapB
locus tag: CCS41_RS15310
old locus tag: CCS41_15075
so part of: sequence
location: complement(39461..39691)
location: region:39461-39691:-1
so has part: feature:39461-39691:-1:exon
subclass of: SO_0000010

position:39691:-1
position: 39691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39461-39691:-1:exon

CCS41_RS15310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: vapB
locus tag: CCS41_RS15310
old locus tag: CCS41_15075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020801512.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapB family antitoxin
translation: MEQTSIFKSNRSQAVRLPKAVALPEDVKRVDIVAIGRTRIITPAGESWDSWFDGESVSADFMVNREQPRDQERETF
SIO_010081: CCS41_RS15310
subclass of: SO_0000673
so part of: CCS41_RS15310
location: complement(39461..39691)
location: region:39461-39691:-1
so has part: feature:39461-39691:-1:exon

WP_119798009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39461-39691:-1:exon

CCS41_RS15315
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15315
old locus tag: CCS41_15080
pseudo: true
so part of: sequence
location: 39819..42889
location: region:39819-42889:1
so has part: feature:39819-42889:1:exon
subclass of: SO_0000010

position:39819:1
position: 39819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42889:1
position: 42889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39819-42889:1:exon

CCS41_RS15315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15315
old locus tag: CCS41_15080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004131804.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATP-binding protein
SIO_010081: CCS41_RS15315
subclass of: SO_0000673
so part of: CCS41_RS15315
location: 39819..42889
location: region:39819-42889:1
so has part: feature:39819-42889:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39819-42889:1:exon

CCS41_RS15320
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: traW
locus tag: CCS41_RS15320
old locus tag: CCS41_15085
so part of: sequence
location: 42899..44092
location: region:42899-44092:1
so has part: feature:42899-44092:1:exon
subclass of: SO_0000010

position:42899:1
position: 42899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44092:1
position: 44092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42899-44092:1:exon

CCS41_RS15320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: traW
locus tag: CCS41_RS15320
old locus tag: CCS41_15085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017891135.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraW
translation: MKKTLIVSVLIIAVNAIAMPVEVTQSLPVTSQVVPALTAINATLAQIAATEFQIGSAINQNSDKLAAMLEETAKTQRDYDTFARKTERLETARRSYTVPDSLCSESTSGMVAQVAASSTAMQSRLVGGSGIANKNIQTAITTSAEPLDQEQFRAAAIHADYCSAAEHAVYGGTPLCPKIADLPGGDNELRSVLSGAGKSGNPPVLTFTQAQTDAAMMYLKNTTQRSAGDQLKKGEAKTATGQQYAGLLNQHQAIQSAAAHPQLAMIAASQASPQTTAVLKEALQTPSAAAYFAQHASPEAKRTAALSERELEFFEVGRRYANTDYLTDLQAMEGDNLLREAIRIQNLQNWLLFGIKQQLQESNIINGQQLGLSADQEFRPLLQQKRQQISAGVSRNG
SIO_010081: CCS41_RS15320
subclass of: SO_0000673
so part of: CCS41_RS15320
location: 42899..44092
location: region:42899-44092:1
so has part: feature:42899-44092:1:exon

WP_162860111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42899-44092:1:exon

CCS41_RS15325
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: traX
locus tag: CCS41_RS15325
old locus tag: CCS41_15090
so part of: sequence
location: 44085..44645
location: region:44085-44645:1
so has part: feature:44085-44645:1:exon
subclass of: SO_0000010

position:44085:1
position: 44085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44645:1
position: 44645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44085-44645:1:exon

CCS41_RS15325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: traX
locus tag: CCS41_RS15325
old locus tag: CCS41_15090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873481.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraX
translation: MDKAQPVIPASRSTRWLKGSYYFFNILLPLSETRRIAAVSARPWRTLLNRIQGLCPKKSAAKSVTTSLDWTQAVRASGQTPDQLNKYYLASKKRWGFVLFIPILLIGILMAMLLLNAATLPLIVWIKASLLSLTLLSVSAWGFTRALLCEYRRWQVRERRVSPLERGEFGYFLAETAWIKKTLKSL
SIO_010081: CCS41_RS15325
subclass of: SO_0000673
so part of: CCS41_RS15325
location: 44085..44645
location: region:44085-44645:1
so has part: feature:44085-44645:1:exon

WP_119797797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44085-44645:1:exon

CCS41_RS15330
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15330
old locus tag: CCS41_15095
so part of: sequence
location: complement(44716..44868)
location: region:44716-44868:-1
so has part: feature:44716-44868:-1:exon
subclass of: SO_0000010

position:44716:-1
position: 44716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44868:-1
position: 44868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44716-44868:-1:exon

CCS41_RS15330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15330
old locus tag: CCS41_15095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009651640.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Hok/Gef family protein
translation: MPRKFALSSKIVICITILLFTLLIRDSLCELRIKQGNTEVAVFLNYELKS
SIO_010081: CCS41_RS15330
subclass of: SO_0000673
so part of: CCS41_RS15330
location: complement(44716..44868)
location: region:44716-44868:-1
so has part: feature:44716-44868:-1:exon

WP_119797796.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44716-44868:-1:exon

CCS41_RS15335
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15335
old locus tag: CCS41_15100
so part of: sequence
location: 45116..47263
location: region:45116-47263:1
so has part: feature:45116-47263:1:exon
subclass of: SO_0000010

position:45116:1
position: 45116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47263:1
position: 47263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45116-47263:1:exon

CCS41_RS15335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15335
old locus tag: CCS41_15100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738258.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotA/TraY family protein
translation: MKNLLRLLGVLALMLYSVHLLADDMNFTTLSGAAKRSGDLSRQMLVMIFGDIVNNPLHPTNTSMIGQLFFFFNSIIAAVAMFWFVAVTLRQLVRAGHQGQVFSGGRGALYPLTTLLGFLSLVPTASGWSISQLIVLWAASIMGVGSANLLTDRAATMLQSGQSLVMQPIAPQTLSASRAIFEMNLCMYGINDELHTMYNESGAAAGTPYMSIKTFPEGFMISNGSTQCGSARLPVSRKNSSWQPIFNVPVNTGPLIIAQSNALDHMQNQLSQAALNFARQYRQKRQTGTGQIDDVESQIQQAAREYEDSISQAVRAMDKGTQLQDLVASQLRQYGWLALGSWYQTFATANNKTNAVVNMRPTVTGMSRLGELGVGSYNEQFTVAYRAQLQNSTYAAPLGTQTSKDNQQTSDVIDASSVLVGITSSWGQIITNSIVNLNFNSTNDSNDQVNPLLKMKAIGDYTLGGATSIFSAYTGAKVLTAWGKGNLAGNVINTITGAGEVAGSLLEAIGPVIYFVVFVLLSIGFSLSVYLPFIPFIYWISAATNWIVGVLIGATAGSLWAATHLGGEEDKGSRSAYGYVFLIDVMLRPMLMVFGFLFASLVVVAVGTLLNTLFASALANVQADSITGLVSIVGVLMIYARICTTLVSSAFSLQVSMPDYVISWLGGREGASMLGGMNESIKGMFANFGSGAKTVPTAKRIVAPPGTDNHSDGIK
SIO_010081: CCS41_RS15335
subclass of: SO_0000673
so part of: CCS41_RS15335
location: 45116..47263
location: region:45116-47263:1
so has part: feature:45116-47263:1:exon

WP_119798010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45116-47263:1:exon

CCS41_RS15340
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: excA
locus tag: CCS41_RS15340
old locus tag: CCS41_15105
so part of: sequence
location: 47343..47981
location: region:47343-47981:1
so has part: feature:47343-47981:1:exon
subclass of: SO_0000010

position:47343:1
position: 47343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47981:1
position: 47981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47343-47981:1:exon

CCS41_RS15340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: excA
locus tag: CCS41_RS15340
old locus tag: CCS41_15105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707032.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid IncI1-type surface exclusion protein ExcA
translation: MRNKKTIGGALIHLTLFFYVWAGIPMLLFYGVGFMLVTNDYRYFSVKNESIILSQLCWAALLIPLLWCIIRYINKRRRIAKILATIKSDESYDPTPDNEIREMHSSAYFGIDTKRGTMLYIRLFNKKEIDIFGFNINNWRHCELTGTNKLRFYINSTEVPFIDIQHRRAWLLYEKICVMKNQQYDYPYNFPGYVKHNTERLSERMGFKMLPC
SIO_010081: CCS41_RS15340
subclass of: SO_0000673
so part of: CCS41_RS15340
location: 47343..47981
location: region:47343-47981:1
so has part: feature:47343-47981:1:exon

WP_119798011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47343-47981:1:exon

CCS41_RS15345
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15345
old locus tag: CCS41_15110
so part of: sequence
location: complement(48007..48312)
location: region:48007-48312:-1
so has part: feature:48007-48312:-1:exon
subclass of: SO_0000010

position:48007:-1
position: 48007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48312:-1
position: 48312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48007-48312:-1:exon

CCS41_RS15345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15345
old locus tag: CCS41_15110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018990404.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPQIKIIITEGAAQGLERCRHFLAEKNPLASIRAGQSIEKQFVLLEKEPEMGRPLDDQPTLRELMIPFGKSGYVALYRFEAETDSVYVLAFRHQKEAGFKD
SIO_010081: CCS41_RS15345
subclass of: SO_0000673
so part of: CCS41_RS15345
location: complement(48007..48312)
location: region:48007-48312:-1
so has part: feature:48007-48312:-1:exon

WP_119798012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48007-48312:-1:exon

CCS41_RS15350
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15350
old locus tag: CCS41_15115
so part of: sequence
location: complement(48300..48572)
location: region:48300-48572:-1
so has part: feature:48300-48572:-1:exon
subclass of: SO_0000010

position:48300:-1
position: 48300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48572:-1
position: 48572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48300-48572:-1:exon

CCS41_RS15350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15350
old locus tag: CCS41_15115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013743557.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MATSIKLDDHLKTRIHHLAERQRRSAHWIMREAIRDYVDREEKRENFKQEALGSWAIYQKTGRHLSGDEVRGWLQTWGTDKETEIPPCHK
SIO_010081: CCS41_RS15350
subclass of: SO_0000673
so part of: CCS41_RS15350
location: complement(48300..48572)
location: region:48300-48572:-1
so has part: feature:48300-48572:-1:exon

WP_119798013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48300-48572:-1:exon

CCS41_RS15355
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15355
old locus tag: CCS41_15120
so part of: sequence
location: 48647..49924
location: region:48647-49924:1
so has part: feature:48647-49924:1:exon
subclass of: SO_0000010

position:48647:1
position: 48647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49924:1
position: 49924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48647-49924:1:exon

CCS41_RS15355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15355
old locus tag: CCS41_15120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbA
translation: MEKRRIGTPENDGFLLLSAFIGVAVIVWFFLAELIYWSCLLLYHLWRLCDLPRIHAFVAQRMNLLAATANSADNVTLMQWLSVMNQTAGILLLFLLPLVIMGVYATFTHPANKTRRKINIHTLPKIMARFSPSIIPALCYGDHRTQLLNVNPPEHRSASDPGEFAQQHQLVVNRHLDHEKATAVFTHQLGRKITQLEDLNAYERALFAVFGLQFFLNDRKTAETLLDTLNRSCLIKSRREKGNIGYPVWSAAHNAFKKVAAHPAARNWIKQHRYARTAISALHADDLHLPTARLRWLKGLDRALWYALCSSDRPKPFVEGAGIVTQAQWEREAAQHHVTLPAPIVLYAVEGLEQDLISMGIVIDDRAPKTDCNGDEEEDLPVPRDHPPPKVEAMPDRVPRSQKVTETEETLPAASFSCKQPKNTF
SIO_010081: CCS41_RS15355
subclass of: SO_0000673
so part of: CCS41_RS15355
location: 48647..49924
location: region:48647-49924:1
so has part: feature:48647-49924:1:exon

WP_240313962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48647-49924:1:exon

CCS41_RS15360
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15360
old locus tag: CCS41_15125
so part of: sequence
location: 49942..50904
location: region:49942-50904:1
so has part: feature:49942-50904:1:exon
subclass of: SO_0000010

position:49942:1
position: 49942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50904:1
position: 50904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49942-50904:1:exon

CCS41_RS15360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15360
old locus tag: CCS41_15125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873487.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin fold domain-containing protein
translation: MLPKTFFTHIIGSILTTRIDHADNGSVLFTLDMSQETHFFMQDNHLIIRQNNLQDIVILDERISPADARHLLNTLTDALIKHQKIKLLRRRIVWSLIFIAIIIAVCGQRLLPTTPPIQTSLLQPSDQQPAPWPLTPSVTETVQLPTLEPYREPALTIQPPSPAWATLANNLRDAAGRKLFTVPLTTDHSRTLYVFSDPLCPHCRDIEPTLAAIGKNYNVEIFPVTLVGKQQTATQVIPVLCALPENRLALWKALFNDSPHAQEPSCDIGEKALAVNDKAFAAYGFPGTPQLIADDGRPVPFSALENDEKLAAFMNANPEK
SIO_010081: CCS41_RS15360
subclass of: SO_0000673
so part of: CCS41_RS15360
location: 49942..50904
location: region:49942-50904:1
so has part: feature:49942-50904:1:exon

WP_119798014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49942-50904:1:exon

CCS41_RS15365
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: trbC
locus tag: CCS41_RS15365
old locus tag: CCS41_15130
so part of: sequence
location: 50907..53057
location: region:50907-53057:1
so has part: feature:50907-53057:1:exon
subclass of: SO_0000010

position:50907:1
position: 50907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53057:1
position: 53057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50907-53057:1:exon

CCS41_RS15365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: trbC
locus tag: CCS41_RS15365
old locus tag: CCS41_15130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738252.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: F-type conjugative transfer protein TrbC
translation: MDKRHASIDPRRVNRPLFNTSLADTLLSPTGVQLMLLMALVAGCLWPVTLLLGLPASVIVLIIFSDRPFRMPLRLPTDVGGPDLTTEREGFNARSGLGGLFRFVTRTRHYQQAGGILCLGYARGKSLARELWLNLDDALRHIQLMATTGGGKTEAILSVYLNSLCWGRGMCLSDGKAENNLAFAVWSLARRFGREDDVYVLNFLTGGKSKFARLVSGDKSRPQSNSINLFANASETFIIQLMDSLLPTASGNENGWQDKARAMISALIYALCYKREKDGLLLSQSVIQHYLPLRKIVELYQEARKNNWHAAGYQPLENYLNTLAGFDMTLIDRPSEWSQSVFDQHGFLIQQFTRMLTLFNDIYGHVFPQGTGDIDLRDVLHNDRILVVLIPALELSHSEAATLGKLYISGLRMTISQDLGDNFEGKREDVLIAKKFARKFPYPIIFDELGAYFAPGIDKLAAQMRSLQYMLMIAAQDVQSMLAKSMREFFTVSANQRTKWFMALEDTMETFNIIRSAAGKGYYSELASVERKGGIVGDQYEDADTRHIRERDNIELSELKALNSGEGMIVFQDAVVRSSAIFIPDDEKLSTKLPMRINRFIELKRPTFSALCEIVPALARKRPVSQANIEGILRQLQHAPEKMARMEDKTLMKVATVALDLDNRDDASYSPAERGILLFEAARHSLTRTEGQYRSQQEPKDISISRKELETNHENP
SIO_010081: CCS41_RS15365
subclass of: SO_0000673
so part of: CCS41_RS15365
location: 50907..53057
location: region:50907-53057:1
so has part: feature:50907-53057:1:exon

WP_119798015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50907-53057:1:exon

CCS41_RS15370
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15370
old locus tag: CCS41_15135
so part of: sequence
location: 53095..53592
location: region:53095-53592:1
so has part: feature:53095-53592:1:exon
subclass of: SO_0000010

position:53095:1
position: 53095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53592:1
position: 53592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53095-53592:1:exon

CCS41_RS15370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15370
old locus tag: CCS41_15135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007183062.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MQSVPPAAAVTAHNEQVTVGFSPSGTALANILNVINSAKSQIYVVAYSFTSKEIATALLTAKKRGVNVQVVVDKKANSEKYTAVTFLANQGVAVRLNDKYTIIHNKFIVIDGKTLQTGSFNYSSSANKRNAENVVVLWNAPTIAAMYQQEFLRLWNEVDTLSPTY
SIO_010081: CCS41_RS15370
subclass of: SO_0000673
so part of: CCS41_RS15370
location: 53095..53592
location: region:53095-53592:1
so has part: feature:53095-53592:1:exon

WP_119798025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53095-53592:1:exon

CCS41_RS15375
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15375
old locus tag: CCS41_15140
so part of: sequence
location: 53841..54182
location: region:53841-54182:1
so has part: feature:53841-54182:1:exon
subclass of: SO_0000010

position:53841:1
position: 53841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54182:1
position: 54182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53841-54182:1:exon

CCS41_RS15375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15375
old locus tag: CCS41_15140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012806090.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKLIIKPIKFRGNSLDELRTFPDAARREAGYQLDQVQHGRNPDDWKPIKSIGTGVCEIRVRDTAGAFRIIYIAKLKNTVYVLHCFQKKTQKTSPQAISLATQRLKDLLKEQPQ
SIO_010081: CCS41_RS15375
subclass of: SO_0000673
so part of: CCS41_RS15375
location: 53841..54182
location: region:53841-54182:1
so has part: feature:53841-54182:1:exon

WP_119798016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53841-54182:1:exon

CCS41_RS15380
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15380
old locus tag: CCS41_15145
so part of: sequence
location: 54179..54463
location: region:54179-54463:1
so has part: feature:54179-54463:1:exon
subclass of: SO_0000010

position:54179:1
position: 54179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54463:1
position: 54463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54179-54463:1:exon

CCS41_RS15380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15380
old locus tag: CCS41_15145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011583148.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MTQCFESVWDAIEDTPAQAENMKVRAALMNALKERIKTKGLKQTEAAKMLGVTQPRISDLIKGKIDLFSIDTLITMLVASGMHIENIEVTTEVA
SIO_010081: CCS41_RS15380
subclass of: SO_0000673
so part of: CCS41_RS15380
location: 54179..54463
location: region:54179-54463:1
so has part: feature:54179-54463:1:exon

WP_119798017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54179-54463:1:exon

CCS41_RS16970
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16970
pseudo: true
so part of: sequence
location: complement(<54497..>55111)
location: region:54497-55111:-1
so has part: feature:54497-55111:-1:exon
subclass of: SO_0000010

position:54497:-1
position: 54497
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:55111:-1
position: 55111
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54497-55111:-1:exon

CCS41_RS16970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013141593.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISKra4 family transposase
SIO_010081: CCS41_RS16970
subclass of: SO_0000673
so part of: CCS41_RS16970
location: complement(<54497..>55111)
location: region:54497-55111:-1
so has part: feature:54497-55111:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54497-55111:-1:exon

CCS41_RS15390
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15390
old locus tag: CCS41_15155
pseudo: true
so part of: sequence
location: <55116..55895
location: region:55116-55895:1
so has part: feature:55116-55895:1:exon
subclass of: SO_0000010

position:55116:1
position: 55116
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:55895:1
position: 55895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55116-55895:1:exon

CCS41_RS15390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15390
old locus tag: CCS41_15155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_041412878.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21 family transposase
SIO_010081: CCS41_RS15390
subclass of: SO_0000673
so part of: CCS41_RS15390
location: <55116..55895
location: region:55116-55895:1
so has part: feature:55116-55895:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55116-55895:1:exon

CCS41_RS15395
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: istB
locus tag: CCS41_RS15395
old locus tag: CCS41_15160
pseudo: true
so part of: sequence
location: 55909..56660
location: region:55909-56660:1
so has part: feature:55909-56660:1:exon
subclass of: SO_0000010

position:55909:1
position: 55909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56660:1
position: 56660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-56660:1:exon

CCS41_RS15395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: istB
locus tag: CCS41_RS15395
old locus tag: CCS41_15160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001677640.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
SIO_010081: CCS41_RS15395
subclass of: SO_0000673
so part of: CCS41_RS15395
location: 55909..56660
location: region:55909-56660:1
so has part: feature:55909-56660:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-56660:1:exon

CCS41_RS15400
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15400
old locus tag: CCS41_15165
so part of: sequence
location: 56977..57225
location: region:56977-57225:1
so has part: feature:56977-57225:1:exon
subclass of: SO_0000010

position:56977:1
position: 56977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57225:1
position: 57225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56977-57225:1:exon

CCS41_RS15400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15400
old locus tag: CCS41_15165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDIVLPKMLTQSFDLFIEPIFVVSKDSRILHANLPSAKLCGFRTNDGLKEKYYEEVKSVLFEDESVIQGLRLGNGKYCTLR
SIO_010081: CCS41_RS15400
subclass of: SO_0000673
so part of: CCS41_RS15400
location: 56977..57225
location: region:56977-57225:1
so has part: feature:56977-57225:1:exon

WP_119798020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56977-57225:1:exon

CCS41_RS15405
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15405
old locus tag: CCS41_15170
pseudo: true
so part of: sequence
location: complement(57217..60203)
location: region:57217-60203:-1
so has part: feature:57217-60203:-1:exon
subclass of: SO_0000010

position:57217:-1
position: 57217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60203:-1
position: 60203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57217-60203:-1:exon

CCS41_RS15405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15405
old locus tag: CCS41_15170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: CCS41_RS15405
subclass of: SO_0000673
so part of: CCS41_RS15405
location: complement(57217..60203)
location: region:57217-60203:-1
so has part: feature:57217-60203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:57217-60203:-1:exon

CCS41_RS15410
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15410
old locus tag: CCS41_15175
so part of: sequence
location: 60372..61019
location: region:60372-61019:1
so has part: feature:60372-61019:1:exon
subclass of: SO_0000010

position:60372:1
position: 60372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61019:1
position: 61019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60372-61019:1:exon

CCS41_RS15410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15410
old locus tag: CCS41_15175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012439747.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MFIRAYLRASTEEQYADRAKEMLEQFVQERGHKIASYYRENVSGTKLDRPELGRLLMDSHHNDILLVEQIDRLTRLSNSDWMTLKKQIEQHELRIVSLDVPTSWHALSDKESSQNDPITRAVITAINNMLIDLMAAMSHKDWLSRRQRQKQGIERAHTLGKYRGKQADGERHQKVMYYRQVKKLSIRETTEATGYSASQVCRIQALYRQNKSEVD
SIO_010081: CCS41_RS15410
subclass of: SO_0000673
so part of: CCS41_RS15410
location: 60372..61019
location: region:60372-61019:1
so has part: feature:60372-61019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60372-61019:1:exon

CCS41_RS15415
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15415
old locus tag: CCS41_15180
so part of: sequence
location: complement(61021..61227)
location: region:61021-61227:-1
so has part: feature:61021-61227:-1:exon
subclass of: SO_0000010

position:61021:-1
position: 61021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61227:-1
position: 61227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61021-61227:-1:exon

CCS41_RS15415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15415
old locus tag: CCS41_15180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707088.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6500 family protein
translation: MRASIREKIVKVCEAKIAAKGDNVGVSFYAFFANKNDDPELLMEVAHWWIMEMKLDHFEKARKIISLV
SIO_010081: CCS41_RS15415
subclass of: SO_0000673
so part of: CCS41_RS15415
location: complement(61021..61227)
location: region:61021-61227:-1
so has part: feature:61021-61227:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61021-61227:-1:exon

CCS41_RS15420
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15420
old locus tag: CCS41_15185
pseudo: true
so part of: sequence
location: complement(<61337..>61921)
location: region:61337-61921:-1
so has part: feature:61337-61921:-1:exon
subclass of: SO_0000010

position:61337:-1
position: 61337
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:61921:-1
position: 61921
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61337-61921:-1:exon

CCS41_RS15420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15420
old locus tag: CCS41_15185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014543172.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: CCS41_RS15420
subclass of: SO_0000673
so part of: CCS41_RS15420
location: complement(<61337..>61921)
location: region:61337-61921:-1
so has part: feature:61337-61921:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61337-61921:-1:exon

CCS41_RS15425
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15425
old locus tag: CCS41_15190
so part of: sequence
location: complement(61939..62898)
location: region:61939-62898:-1
so has part: feature:61939-62898:-1:exon
subclass of: SO_0000010

position:61939:-1
position: 61939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62898:-1
position: 62898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61939-62898:-1:exon

CCS41_RS15425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15425
old locus tag: CCS41_15190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705839.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MDKTSVGIDVAKLKFDVAVWVERKKYKTKAFPNTPSGFSQLLKWLIPYGDCHICLEATGSYSVPLAMFLVDNGIDVSLENPSRIHAFGESELSRNKTDQGDAKMIVRYCALHTPVLWTPPPLSERQLTALVRHLKSLEEMRQMQENRQSVADDVVQSSLLEIISALKQQIQATKEKIKNHIDNDPDLKKNKALLESIPGIGEILSASLLAYVGNVSKFTNSKAVVAYAGLNPKLCESGLFKGRSRLSKRGHTELRKALYMPALAALSCNPIVKAQWQRLVSRHKGGKMGVCAAMRKLLQLAYGVLKSGIPFDTKIALAS
SIO_010081: CCS41_RS15425
subclass of: SO_0000673
so part of: CCS41_RS15425
location: complement(61939..62898)
location: region:61939-62898:-1
so has part: feature:61939-62898:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61939-62898:-1:exon

CCS41_RS15430
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15430
old locus tag: CCS41_15195
so part of: sequence
location: 63316..64329
location: region:63316-64329:1
so has part: feature:63316-64329:1:exon
subclass of: SO_0000010

position:63316:1
position: 63316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64329:1
position: 64329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63316-64329:1:exon

CCS41_RS15430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15430
old locus tag: CCS41_15195
inference: COORDINATES: protein motif:HMM:NF033590.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS4 family transposase
translation: MKNDSGEIGLLVESIVKSGNRHMKTVTGNGNEWIREEFHQIDFGDKRLKERFFETAGLLSSKASGSIYPSCHGSWSQAKGAYRFFSNERVSESALFRTHCVQTQKRLEGHSLVFSLQDTSELNFDSHKKTEGLGSISKAYHKHKMGLMLHASLMVTQEGLPLGLSSLKCWSRVSREETPQEKQRRLYQSTMKEKESIKWIETLYETAALIPKDTCLITLGDREADIFELFRVASSLKTFFIIRNRKDRKFIDEKGKKTTVQTALSKTPILKTIALTLPKNQQRVARTAYVDIRSISGWLPIRNNLVYGPPIKTLHGISMKRFTYLPSVLKNSLLQKE
SIO_010081: CCS41_RS15430
subclass of: SO_0000673
so part of: CCS41_RS15430
location: 63316..64329
location: region:63316-64329:1
so has part: feature:63316-64329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63316-64329:1:exon

CCS41_RS15435
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15435
old locus tag: CCS41_15200
so part of: sequence
location: 64350..64556
location: region:64350-64556:1
so has part: feature:64350-64556:1:exon
subclass of: SO_0000010

position:64350:1
position: 64350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64556:1
position: 64556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64350-64556:1:exon

CCS41_RS15435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15435
old locus tag: CCS41_15200
inference: COORDINATES: protein motif:HMM:NF013752.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MTNLTATDAFEAEEKVNWYRLRWKIEEFFKTLKSGCCVEQCRLNTATKLTKMITLKSIIAFKLMYIPK
SIO_010081: CCS41_RS15435
subclass of: SO_0000673
so part of: CCS41_RS15435
location: 64350..64556
location: region:64350-64556:1
so has part: feature:64350-64556:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64350-64556:1:exon

CCS41_RS15440
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15440
old locus tag: CCS41_15205
so part of: sequence
location: complement(64559..65581)
location: region:64559-65581:-1
so has part: feature:64559-65581:-1:exon
subclass of: SO_0000010

position:64559:-1
position: 64559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65581:-1
position: 65581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64559-65581:-1:exon

CCS41_RS15440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15440
old locus tag: CCS41_15205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011144720.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS630 family transposase
translation: MKIELTADQKITLEAQHRQSHDRRVCDRIRCVLLSADGWTPPMIAHSQLINETTVRRHLTDYHKLNKLKPENGGSDGYLNAEQTTSLVEHLTQPLYHHNHQIVAYIAGRWNITFTVSGLYKGLKQHGFSYKKPKGVPHKFAVEKQQQFIKTYSELKDAAGNDPILFIDAVHPTQTTKISYGWIRKGQDKTIETTGSRTRLNIMGALNIQNVANPIIRDDETINSENVVHFLSAIRAHYPITTTAHVILEGAGYHRSQLVQDAALTLNIQLHYLPPYSPNLNPIERLWKVMNEQTRNNRYYPSKQSFKNDILNFFEVKLPQMVSSLVSRLNDNFQALNPAS
SIO_010081: CCS41_RS15440
subclass of: SO_0000673
so part of: CCS41_RS15440
location: complement(64559..65581)
location: region:64559-65581:-1
so has part: feature:64559-65581:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64559-65581:-1:exon

CCS41_RS15445
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15445
old locus tag: CCS41_15210
so part of: sequence
location: complement(65813..67123)
location: region:65813-67123:-1
so has part: feature:65813-67123:-1:exon
subclass of: SO_0000010

position:65813:-1
position: 65813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67123:-1
position: 67123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65813-67123:-1:exon

CCS41_RS15445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15445
old locus tag: CCS41_15210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004703986.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytosine permease
translation: MINNSVIGNDYAFSRVPLTARSSLLTVTLIRIGVTTALAQFMLGATLGHSMTFSQAMLATFFGSLIVEFVGLGLGIAGAREGLSTSLLARWCGFGRFGSVLIGLAIAISTLCWFGVQNSILAKGLNYASDGRLGFGWASAISGISLTVLVIFGFRALGWTAKLAVPLFFLVIGWIMVILLQGHNVADLVTSIPTGVPMTLGAGATAVAGGVIVSTLITPDISRYCQNGRHVFWMVTTSIVIGEFIVNGIAILIAHALDTDDVVSIMTKTAGWIGLLSVILSAVKINDVNLYSVSLALTNVMEGMTGKKWSYIGFTLAAGIIGTVLSIIGILDKFTDFLILLGVVFPPIAGVMLVDYYILRTNRQLLDTTRTKQILPDEGSTPLIGWPAMISWVLGGFIGFTIEWGIPSLNSLFVASVVYLLTVRLVQSTRHNKKRV
SIO_010081: CCS41_RS15445
subclass of: SO_0000673
so part of: CCS41_RS15445
location: complement(65813..67123)
location: region:65813-67123:-1
so has part: feature:65813-67123:-1:exon

WP_119798021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65813-67123:-1:exon