Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-2.
type: Entry
definition: Candidatus Fukatsuia symbiotica strain 5D plasmid p5D_Fsymbiotica-2.
sequence version: NZ_CP021661.1
sequence date: 2023-03-18
sequence: sequence
division: CON
label: NZ_CP021661.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07168131
keyword: RefSeq
source: Candidatus Fukatsuia symbiotica
organism: Candidatus Fukatsuia symbiotica
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Candidatus Fukatsuia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP021661.1.\nBacteria and source DNA available from Kerry M. Oliver, 120 Cedar\nStreet, 413 Biological Sciences Building, Athens, 30602,GA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-MAY-2017\nAssembly Method :: HGAP.3 v. 3\nAssembly Name :: 5D_Xtype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 290.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/18/2023 02:52:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,119\nCDSs (total) :: 3,050\nGenes (coding) :: 2,663\nCDSs (with protein) :: 2,663\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 387\nCDSs (without protein) :: 387\nPseudo Genes (ambiguous residues) :: 0 of 387\nPseudo Genes (frameshifted) :: 241 of 387\nPseudo Genes (incomplete) :: 170 of 387\nPseudo Genes (internal stop) :: 43 of 387\nPseudo Genes (multiple problems) :: 57 of 387\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 91823
topology: linear
so has quality: SO_0000987
location: 1..91823
location: region:1-91823:1
RO_0002162: 1878942

NZ_CP021661
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07168131
type: BioSample
SIO_000068: biosample

1
title: Genome sequence of Candidatus Fukatsuia symbiotica and Candidatus Hamiltonella defensa from Acyrthosiphon pisum strain 5D
author: Patel, V.A.
author: Chevignon, G.
author: Russell, J.A.
author: Oliver, K.M.
journal: Unpublished

2
title: Direct Submission
author: Patel, V.A.
author: Chevignon, G.
author: Russell, J.A.
author: Oliver, K.M.
journal: Submitted (30-MAY-2017) Department of Entomology, The University of Georgia, 120 Cedar St, Athens, GA 30602, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:91823:1
position: 91823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-91823:1:source
so part of: sequence
organism: Candidatus Fukatsuia symbiotica
mol type: genomic DNA
strain: 5D
isolation source: cell culture
host: Acyrthosiphon pisum
plasmid: p5D_Fsymbiotica-2
country: USA
collection date: 2016-03

1878942
type: Taxonomy
SIO_000068: taxonomy

CCS41_RS14500
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14500
old locus tag: CCS41_14265
so part of: sequence
location: <1..1046
location: region:1-1046:1
so has part: feature:1-1046:1:exon
subclass of: SO_0000010

position:1046:1
position: 1046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1046:1:exon

CCS41_RS14500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14500
old locus tag: CCS41_14265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 3
transl table: 11
product: hypothetical protein
translation: ALAKSEVRLWEVVTVNVGQWAEVRPFGTTSTVLRVYERSGTQNLKRWDCIATSVILLDGKPTFGGGILPFSQEQAQDFPVFLEYAHRRVIEELKEIRADDQQCSWSDEEINLMASSEESDPLSELLFSFWICETYLALTKPMPTLVNRDGHLLQWSKVRFPVAPENQDEIERRLHTAPHLDFDSNTKEWLWFDGEKDKVRDFGTTILGQLSLVDDSLIATVNSVERAETVKAYLNDLLGKLIGNPLSVHENVQSMMENYSTKNLPPAEPLDVPELITASLDQHYRKILDEPIPALNNLTPRECVQKSDQQVNLIQWLKSLENNTARAPHMAHYDFTWMWQELGIEEV
SIO_010081: CCS41_RS14500
subclass of: SO_0000673
so part of: CCS41_RS14500
location: <1..1046
location: region:1-1046:1
so has part: feature:1-1046:1:exon

WP_119797894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1046:1:exon

CCS41_RS17330
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS17330
so part of: sequence
location: 1048..1173
location: region:1048-1173:1
so has part: feature:1048-1173:1:exon
subclass of: SO_0000010

position:1048:1
position: 1048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1173:1
position: 1173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1048-1173:1:exon

CCS41_RS17330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS17330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRPHLAKVGNTFNTAAFIRQLAQQAPPHLSGGDDDYCRTA
SIO_010081: CCS41_RS17330
subclass of: SO_0000673
so part of: CCS41_RS17330
location: 1048..1173
location: region:1048-1173:1
so has part: feature:1048-1173:1:exon

WP_275887700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1048-1173:1:exon

CCS41_RS15800
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15800
so part of: sequence
location: 1148..1324
location: region:1148-1324:1
so has part: feature:1148-1324:1:exon
subclass of: SO_0000010

position:1148:1
position: 1148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1324:1
position: 1324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148-1324:1:exon

CCS41_RS15800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMTIAEQLEAKGFQKGRQEGILKGEKKASFKIAQHMLSSGIARDAVKQFTGLSDAMRI
SIO_010081: CCS41_RS15800
subclass of: SO_0000673
so part of: CCS41_RS15800
location: 1148..1324
location: region:1148-1324:1
so has part: feature:1148-1324:1:exon

WP_162860125.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148-1324:1:exon

CCS41_RS14505
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14505
old locus tag: CCS41_14270
so part of: sequence
location: 1369..1602
location: region:1369-1602:1
so has part: feature:1369-1602:1:exon
subclass of: SO_0000010

position:1369:1
position: 1369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1602:1
position: 1602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1369-1602:1:exon

CCS41_RS14505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14505
old locus tag: CCS41_14270
inference: COORDINATES: protein motif:HMM:NF022183.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family protein
translation: MTEPNEKKKREYRLGNPLTQSEYNKRFEERKTKENKSIRMFVPYELAEDFKRYCKGNGLTMQDTVTELLREFMSDKK
SIO_010081: CCS41_RS14505
subclass of: SO_0000673
so part of: CCS41_RS14505
location: 1369..1602
location: region:1369-1602:1
so has part: feature:1369-1602:1:exon

WP_119797895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1369-1602:1:exon

CCS41_RS14510
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: repA
locus tag: CCS41_RS14510
old locus tag: CCS41_14275
so part of: sequence
location: 1860..2717
location: region:1860-2717:1
so has part: feature:1860-2717:1:exon
subclass of: SO_0000010

position:1860:1
position: 1860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2717:1
position: 2717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1860-2717:1:exon

CCS41_RS14510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: repA
locus tag: CCS41_RS14510
old locus tag: CCS41_14275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MTRTGYISNLYPVFTPPPSDKQRPAFIRYCMQRAAEKDVARSELLYIVQPTDPKTGDLRPRFRRLNEHRARALRAMVLAMLHHFNIASGLVMASVEQLADECGLSTLSEAGNKSITRASRLITDFMEPMGLVMCEKVWDKLMASYIPKLITLTPLFFMLFEVSAEKLASAQNQQMGWINKGLLEKGEPSITLTEASRRAKEQHIKRAFEHRKSRYAINKQRKLAKSLAKLDEQTAKQDILHKLVKRYSLLELTGMGQEGLKKQVDIEYYRLRKIASTPPPDIPVH
SIO_010081: CCS41_RS14510
subclass of: SO_0000673
so part of: CCS41_RS14510
location: 1860..2717
location: region:1860-2717:1
so has part: feature:1860-2717:1:exon

WP_119797896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1860-2717:1:exon

CCS41_RS14515
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14515
old locus tag: CCS41_14280
so part of: sequence
location: complement(3066..4169)
location: region:3066-4169:-1
so has part: feature:3066-4169:-1:exon
subclass of: SO_0000010

position:3066:-1
position: 3066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4169:-1
position: 4169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3066-4169:-1:exon

CCS41_RS14515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14515
old locus tag: CCS41_14280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013220547.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISAs1 family transposase
translation: MEFPDPRCAGRTAHRFIDVLVIAVCAVIAGAETWIDIALYGRSKKDWLSTFLTLEGGLPSHDTFRRVFSIIDPVLFEQRFSLWVKDCFLPIDREVVAIDGKTVRGSFDRAAQQGPLHMVSAFATEQGISLGQRAVENKSNEIAALPVLLDSLSVKGNIVTLDAMGCQRVIAQKIIAQQADYILALKGNQKKCHKAVVDYCHTTCIAVPAAIKPDYDAFDDSHGRRVRRRGWVLPCVDKLAELQAWPELRNIILIENIRSINHRHKTTCELHYYLSSCNDAAEIQIAAIRKHWAIENSLHWVLDVTFREDDSRVRDKVATRTFALLRKMALNIVRKDTANKASLRGRRKCAGWDDEYMEHLLFRNDKK
SIO_010081: CCS41_RS14515
subclass of: SO_0000673
so part of: CCS41_RS14515
location: complement(3066..4169)
location: region:3066-4169:-1
so has part: feature:3066-4169:-1:exon

WP_119797760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3066-4169:-1:exon

CCS41_RS14520
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14520
old locus tag: CCS41_14285
so part of: sequence
location: complement(4286..4843)
location: region:4286-4843:-1
so has part: feature:4286-4843:-1:exon
subclass of: SO_0000010

position:4286:-1
position: 4286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4843:-1
position: 4843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4286-4843:-1:exon

CCS41_RS14520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14520
old locus tag: CCS41_14285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004091417.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLVGYARVSTQDQNLALQIEALTKAGCKKIFDDKISGSRAERPGLVKALEILREGDTLVVWKLDRLGRSVKNLVDLVGELHKQNIQFKSLTDAIDTGTASGRFFFHVMASLAEMERELTVERTRAGLEVARQLGRKGGRKRQMTDSKIESAKKLLANGIPPRDVAKNLGVSVPTLYRWLPASTHP
SIO_010081: CCS41_RS14520
subclass of: SO_0000673
so part of: CCS41_RS14520
location: complement(4286..4843)
location: region:4286-4843:-1
so has part: feature:4286-4843:-1:exon

WP_119797897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4286-4843:-1:exon

CCS41_RS14525
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14525
old locus tag: CCS41_14290
so part of: sequence
location: complement(4845..5219)
location: region:4845-5219:-1
so has part: feature:4845-5219:-1:exon
subclass of: SO_0000010

position:4845:-1
position: 4845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5219:-1
position: 5219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4845-5219:-1:exon

CCS41_RS14525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14525
old locus tag: CCS41_14290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873536.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5615 family PIN-like protein
translation: MKLLIDMNLSPRWSNVLAAAGIEAVHWSTLGENNASDLEIMAYAGTNDYIVLTHDLDFSAILAATHGEKPSVVQIRTFDISPDVIGKQIVAALNQMASELEAGALLTVDTNRTRLRVLPLQQKH
SIO_010081: CCS41_RS14525
subclass of: SO_0000673
so part of: CCS41_RS14525
location: complement(4845..5219)
location: region:4845-5219:-1
so has part: feature:4845-5219:-1:exon

WP_119797898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4845-5219:-1:exon

CCS41_RS14530
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14530
old locus tag: CCS41_14295
so part of: sequence
location: complement(5216..5446)
location: region:5216-5446:-1
so has part: feature:5216-5446:-1:exon
subclass of: SO_0000010

position:5216:-1
position: 5216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5446:-1
position: 5446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5216-5446:-1:exon

CCS41_RS14530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14530
old locus tag: CCS41_14295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF433 domain-containing protein
translation: MGQLNRITQEPNVMGGKACIRGMRVTVGMVVGQIGAGHNIDEILADYPYLEREDIMQALRYAAWLSEEREVMLANA
SIO_010081: CCS41_RS14530
subclass of: SO_0000673
so part of: CCS41_RS14530
location: complement(5216..5446)
location: region:5216-5446:-1
so has part: feature:5216-5446:-1:exon

WP_119797899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5216-5446:-1:exon

CCS41_RS14535
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14535
old locus tag: CCS41_14300
so part of: sequence
location: 5702..6805
location: region:5702-6805:1
so has part: feature:5702-6805:1:exon
subclass of: SO_0000010

position:5702:1
position: 5702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6805:1
position: 6805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5702-6805:1:exon

CCS41_RS14535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14535
old locus tag: CCS41_14300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013220547.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISAs1 family transposase
translation: MEFPDPRCAGRTAHRFIDVLVIAVCAVIAGAETWIDIALYGRSKKDWLSTFLTLEGGLPSHDTFRRVFSIIDPVLFEQRFSLWVKDCFLPIDREVVAIDGKTVRGSFDRAAQQGPLHMVSAFATEQGISLGQRAVENKSNEIAALPVLLDSLSVKGNIVTLDAMGCQRVIAQKIIAQQADYILALKGNQKKCHKAVVDYCHTTCIAVPAAIKPDYDAFDDSHGRRVRRRGWVLPCVDKLAELQAWPELRNIILIENIRSINHRHKTTCELHYYLSSCNDAAEIQIAAIRKHWAIENSLHWVLDVTFREDDSRVRDKVATRTFALLRKMALNIVRKDTANKASLRGRRKCAGWDDEYMEHLLFRNDKK
SIO_010081: CCS41_RS14535
subclass of: SO_0000673
so part of: CCS41_RS14535
location: 5702..6805
location: region:5702-6805:1
so has part: feature:5702-6805:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5702-6805:1:exon

CCS41_RS14540
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: repA
locus tag: CCS41_RS14540
old locus tag: CCS41_14305
so part of: sequence
location: complement(7154..8011)
location: region:7154-8011:-1
so has part: feature:7154-8011:-1:exon
subclass of: SO_0000010

position:7154:-1
position: 7154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8011:-1
position: 8011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7154-8011:-1:exon

CCS41_RS14540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: repA
locus tag: CCS41_RS14540
old locus tag: CCS41_14305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MTRTGYISNLYPVFTPPPSDKQRPAFIRYCMQRAAEKDVARSELLYIVQPTDPKTGDLRPRFRRLNEHRARALRAMVLAMLHHFNIASGLVMASVEQLADECGLSTLSEAGNKSITRASRLITDFMEPMGLVMCEKVWDKLMASYIPKLITLTPLFFMLFEVSAEKLASAQNQQMGWINKGLLEKGEPSITLTEASRRAKEQHIKRAFEHRKSRYAINKQRKLAKSLAKLDEQTAKQDILHKLVKRYSLLELTGMGQEGLKKQVDIEYYRLRKIASTPPPDIPVH
SIO_010081: CCS41_RS14540
subclass of: SO_0000673
so part of: CCS41_RS14540
location: complement(7154..8011)
location: region:7154-8011:-1
so has part: feature:7154-8011:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7154-8011:-1:exon

CCS41_RS14545
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14545
old locus tag: CCS41_14310
so part of: sequence
location: complement(8269..8502)
location: region:8269-8502:-1
so has part: feature:8269-8502:-1:exon
subclass of: SO_0000010

position:8269:-1
position: 8269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8502:-1
position: 8502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8269-8502:-1:exon

CCS41_RS14545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14545
old locus tag: CCS41_14310
inference: COORDINATES: protein motif:HMM:NF022183.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family protein
translation: MTEPNEKKKREYRLGNPLTQSEYNKRFEERKTKENKSIRMFVPYELAEDFKRYCKGNGLTMQDTVTELLREFMSDKK
SIO_010081: CCS41_RS14545
subclass of: SO_0000673
so part of: CCS41_RS14545
location: complement(8269..8502)
location: region:8269-8502:-1
so has part: feature:8269-8502:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8269-8502:-1:exon

CCS41_RS15805
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15805
so part of: sequence
location: complement(8547..8723)
location: region:8547-8723:-1
so has part: feature:8547-8723:-1:exon
subclass of: SO_0000010

position:8547:-1
position: 8547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8723:-1
position: 8723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8547-8723:-1:exon

CCS41_RS15805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15805
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMTIAEQLEAKGFQKGRQEGILKGEKKASFKIAQHMLSSGIARDAVKQFTGLSDAMRI
SIO_010081: CCS41_RS15805
subclass of: SO_0000673
so part of: CCS41_RS15805
location: complement(8547..8723)
location: region:8547-8723:-1
so has part: feature:8547-8723:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8547-8723:-1:exon

CCS41_RS17335
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS17335
so part of: sequence
location: complement(8698..8823)
location: region:8698-8823:-1
so has part: feature:8698-8823:-1:exon
subclass of: SO_0000010

position:8698:-1
position: 8698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8823:-1
position: 8823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8698-8823:-1:exon

CCS41_RS17335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS17335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRPHLAKVGNTFNTAAFIRQLAQQAPPHLSGGDDDYCRTA
SIO_010081: CCS41_RS17335
subclass of: SO_0000673
so part of: CCS41_RS17335
location: complement(8698..8823)
location: region:8698-8823:-1
so has part: feature:8698-8823:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8698-8823:-1:exon

CCS41_RS14550
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14550
old locus tag: CCS41_14315
so part of: sequence
location: complement(8825..10183)
location: region:8825-10183:-1
so has part: feature:8825-10183:-1:exon
subclass of: SO_0000010

position:8825:-1
position: 8825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10183:-1
position: 10183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8825-10183:-1:exon

CCS41_RS14550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14550
old locus tag: CCS41_14315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTRKQQKELDKAIVHLMKYAEEALWSERKKQFFDDILMDAANGVDISVSELIETLGEGYLGMAFSYLFELFATSCWNNEKFCMIEDYVKRRGWRETPYATRYLNALAKSEVRLWEVVTVNVGQWAEVRPFGTTSTVLRVYERSGTQNLKRWDCIATSVILLDGKPTFGGGILPFSQEQAQDFPVFLEYAHRRVIEELKEIRADDQQCSWSDEEINLMASSEESDPLSELLFSFWICETYLALTKPMPTLVNRDGHLLQWSKVRFPVAPENQDEIERRLHTAPHLDFDSNTKEWLWFDGEKDKVRDFGTTILGQLSLVDDSLIATVNSVERAETVKAYLNDLLGKLIGNPLSVHENVQSMMENYSTKNLPPAEPLDVPELITASLDQHYRKILDEPIPALNNLTPRECVQKSDQQVNLIQWLKSLENNTARAPHMAHYDFTWMWQELGIEEV
SIO_010081: CCS41_RS14550
subclass of: SO_0000673
so part of: CCS41_RS14550
location: complement(8825..10183)
location: region:8825-10183:-1
so has part: feature:8825-10183:-1:exon

WP_119797900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8825-10183:-1:exon

CCS41_RS14555
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14555
old locus tag: CCS41_14320
so part of: sequence
location: complement(10232..10504)
location: region:10232-10504:-1
so has part: feature:10232-10504:-1:exon
subclass of: SO_0000010

position:10232:-1
position: 10232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10504:-1
position: 10504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10232-10504:-1:exon

CCS41_RS14555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14555
old locus tag: CCS41_14320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001433474.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arylsulfatase regulator
translation: MIDLSAEQRHMIKLIDDYAAKFPLSEVGDEQLLSTCYDYMGAFKRILDSTSKRQMDYICQQYDGFYRFAKLMEMLAQGLADEVIEVPKDH
SIO_010081: CCS41_RS14555
subclass of: SO_0000673
so part of: CCS41_RS14555
location: complement(10232..10504)
location: region:10232-10504:-1
so has part: feature:10232-10504:-1:exon

WP_119797975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10232-10504:-1:exon

CCS41_RS14560
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14560
old locus tag: CCS41_14325
so part of: sequence
location: 10771..11793
location: region:10771-11793:1
so has part: feature:10771-11793:1:exon
subclass of: SO_0000010

position:10771:1
position: 10771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11793:1
position: 11793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10771-11793:1:exon

CCS41_RS14560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14560
old locus tag: CCS41_14325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011144720.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS630 family transposase
translation: MKIELTADQKITLEAQHRQSHDRRVCDRIRCVLLSADGWTPPMIAHSQLINETTVRRHLTDYHKLNKLKPENGGSDGYLNAEQTTSLVEHLTQQLYHHNHQIVAYIAGRWNITFTVSGLYKGLKQHGFSYKKPKGVPHKFDVEKQQQFIKTYSELKDAAGNDPILFIDAVHPTQATQISYGWIRKGQDKTIETTGSRTRLNIMGALNIQNVANLIIRDDETINSENVVHFLSAIRAHYPITTTAHVILDGAGYHRSQLVQDAALTLNIQLHYLPPYSPNLNPIERLWKVMNEQTRNNRYYPSKQSFKNDILNFFEVKLPQMASSLVSRLTDNFQALNPAS
SIO_010081: CCS41_RS14560
subclass of: SO_0000673
so part of: CCS41_RS14560
location: 10771..11793
location: region:10771-11793:1
so has part: feature:10771-11793:1:exon

WP_119797901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10771-11793:1:exon

CCS41_RS14565
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14565
old locus tag: CCS41_14330
pseudo: true
so part of: sequence
location: complement(11796..>11948)
location: region:11796-11948:-1
so has part: feature:11796-11948:-1:exon
subclass of: SO_0000010

position:11796:-1
position: 11796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11948:-1
position: 11948
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11796-11948:-1:exon

CCS41_RS14565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14565
old locus tag: CCS41_14330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005369975.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: virulence factor
SIO_010081: CCS41_RS14565
subclass of: SO_0000673
so part of: CCS41_RS14565
location: complement(11796..>11948)
location: region:11796-11948:-1
so has part: feature:11796-11948:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11796-11948:-1:exon

CCS41_RS14570
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14570
old locus tag: CCS41_14335
so part of: sequence
location: complement(11960..12160)
location: region:11960-12160:-1
so has part: feature:11960-12160:-1:exon
subclass of: SO_0000010

position:11960:-1
position: 11960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12160:-1
position: 12160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11960-12160:-1:exon

CCS41_RS14570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14570
old locus tag: CCS41_14335
inference: COORDINATES: protein motif:HMM:NF036629.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5397 family protein
translation: MRTEPFPLPEMLGQYRQFGQLGPAYKIVIPLRPVGDNDWLLLIQIAETGEKVEYRFSRAEQDPVVH
SIO_010081: CCS41_RS14570
subclass of: SO_0000673
so part of: CCS41_RS14570
location: complement(11960..12160)
location: region:11960-12160:-1
so has part: feature:11960-12160:-1:exon

WP_119797902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11960-12160:-1:exon

CCS41_RS16900
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16900
so part of: sequence
location: complement(12259..13278)
location: region:12259-13278:-1
so has part: feature:12259-13278:-1:exon
subclass of: SO_0000010

position:12259:-1
position: 12259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13278:-1
position: 13278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12259-13278:-1:exon

CCS41_RS16900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16900
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MKEKRIPNNSISNASPEEKAIPPARERFARLIKNLSEHLAEKRIRDRQRIISTRDLYTKRAKLSKNVHYLDKKTDRTLFVDTGNAIAVRKGGMTDSAVAVALALAKEKFGSTLTIKGSDEFRKQVIEVAVRNNLDVHFTDKMLNQQFEERKAELAIAQEGQRIEQSGMPASATPDKLPDIHPDEKGSEAKDKSTPALTRQAESKPFTFMAKVHEGVLLEYGSAPYKFKPDMNKPADERDDSYFVKLKTEDGKIRTLWGVGLQDAVSGLKQGERVKFEDKGVEEVRWTEMLKEGSTVEKSTQRRIWEGSSLDGEREQHPGKPVAPQHPTDDYHYDGPDVA
SIO_010081: CCS41_RS16900
subclass of: SO_0000673
so part of: CCS41_RS16900
location: complement(12259..13278)
location: region:12259-13278:-1
so has part: feature:12259-13278:-1:exon

WP_240313959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12259-13278:-1:exon

CCS41_RS16905
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16905
pseudo: true
so part of: sequence
location: complement(<13827..14078)
location: region:13827-14078:-1
so has part: feature:13827-14078:-1:exon
subclass of: SO_0000010

position:13827:-1
position: 13827
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:14078:-1
position: 14078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13827-14078:-1:exon

CCS41_RS16905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003142901.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: CCS41_RS16905
subclass of: SO_0000673
so part of: CCS41_RS16905
location: complement(<13827..14078)
location: region:13827-14078:-1
so has part: feature:13827-14078:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13827-14078:-1:exon

CCS41_RS14580
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: mobC
locus tag: CCS41_RS14580
old locus tag: CCS41_14345
so part of: sequence
location: complement(15065..15415)
location: region:15065-15415:-1
so has part: feature:15065-15415:-1:exon
subclass of: SO_0000010

position:15065:-1
position: 15065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15415:-1
position: 15415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15065-15415:-1:exon

CCS41_RS14580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: mobC
locus tag: CCS41_RS14580
old locus tag: CCS41_14345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001773445.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MTEKKNKDKVVAFRLSQEDFAQFEEKLASSNMKRSEFFREIFLNSNVNLTVKSSPTKNLKQLIFYYNKSSNNINQIAYQLNSAHLSEKVSERLYKSVANALIDIRELLLSGVKDAD
SIO_010081: CCS41_RS14580
subclass of: SO_0000673
so part of: CCS41_RS14580
location: complement(15065..15415)
location: region:15065-15415:-1
so has part: feature:15065-15415:-1:exon

WP_119797903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15065-15415:-1:exon

CCS41_RS14585
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14585
old locus tag: CCS41_14350
so part of: sequence
location: 15721..16134
location: region:15721-16134:1
so has part: feature:15721-16134:1:exon
subclass of: SO_0000010

position:15721:1
position: 15721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16134:1
position: 16134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15721-16134:1:exon

CCS41_RS14585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14585
old locus tag: CCS41_14350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707076.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDSIKNQIKELISLLNDPHIKSKQAAFNACFEQLTRAKELASWETIAAIINTETGIVFDAKTASNMYGRTKKKYSNEKVSIKSKIVNLINKNNDFESTKIDNNETYQNQKRQVSNPDELRKIRSRTIDLDELKNGD
SIO_010081: CCS41_RS14585
subclass of: SO_0000673
so part of: CCS41_RS14585
location: 15721..16134
location: region:15721-16134:1
so has part: feature:15721-16134:1:exon

WP_119797904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15721-16134:1:exon

CCS41_RS14590
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: stbB
locus tag: CCS41_RS14590
old locus tag: CCS41_14355
so part of: sequence
location: 16136..16843
location: region:16136-16843:1
so has part: feature:16136-16843:1:exon
subclass of: SO_0000010

position:16136:1
position: 16136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16843:1
position: 16843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16136-16843:1:exon

CCS41_RS14590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: stbB
locus tag: CCS41_RS14590
old locus tag: CCS41_14355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707077.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: StbB family protein
translation: MKIAVLNYTGTVGKTTIAAHLLSPRMNNSPIFAIESINETAEGLGVDVEKMKGNKFRDLFKKIMLEDNAIIDIGASNIEDFMNNMIKFDNSHEEIDFFVVPVTGGTKEQKESISMLDSLAAIGIPPNKIRVIFNRVDSDVIEEFPFIMGFYKKEKSFIADPKCAIWENELFDALSVKGLTVDALMKDQTDYKSLLKSKKEASEKDRNHWADMFGLKALSKSVKRNLDDVYLELFK
SIO_010081: CCS41_RS14590
subclass of: SO_0000673
so part of: CCS41_RS14590
location: 16136..16843
location: region:16136-16843:1
so has part: feature:16136-16843:1:exon

WP_119797905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16136-16843:1:exon

CCS41_RS14595
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14595
old locus tag: CCS41_14360
so part of: sequence
location: 16853..17449
location: region:16853-17449:1
so has part: feature:16853-17449:1:exon
subclass of: SO_0000010

position:16853:1
position: 16853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17449:1
position: 17449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16853-17449:1:exon

CCS41_RS14595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14595
old locus tag: CCS41_14360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857443.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKESISPRTARDALIIELLGDVGSIHDEIKELPNVLKASLSESLKIIATAVEDAEKTAEKLKEETKTALASLSRSELNQAQEKIGDLVKSSVDEAVKKSLSGAQAEIQMLEESVHSVTVSTRKHNPAIMNYVLAMVMTVMIVTMLFSTIYLWGEVQEARNVARHTERTLDMAGSAMDKLPEKYKQQIRDEIEKIRSK
SIO_010081: CCS41_RS14595
subclass of: SO_0000673
so part of: CCS41_RS14595
location: 16853..17449
location: region:16853-17449:1
so has part: feature:16853-17449:1:exon

WP_119797906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16853-17449:1:exon

CCS41_RS14600
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14600
old locus tag: CCS41_14365
so part of: sequence
location: complement(17541..17846)
location: region:17541-17846:-1
so has part: feature:17541-17846:-1:exon
subclass of: SO_0000010

position:17541:-1
position: 17541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17846:-1
position: 17846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17541-17846:-1:exon

CCS41_RS14600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14600
old locus tag: CCS41_14365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001623617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLKKSPKLNNINTSKTLKSFVSEASMRPVSGTIITRVNFPLTDDDIALFDRFSDEASSRRVSVLRASLAALERLDEDSRNQLIRQAEIASPKPGRPSVKK
SIO_010081: CCS41_RS14600
subclass of: SO_0000673
so part of: CCS41_RS14600
location: complement(17541..17846)
location: region:17541-17846:-1
so has part: feature:17541-17846:-1:exon

WP_119797907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17541-17846:-1:exon

CCS41_RS14605
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14605
old locus tag: CCS41_14370
so part of: sequence
location: complement(17892..18557)
location: region:17892-18557:-1
so has part: feature:17892-18557:-1:exon
subclass of: SO_0000010

position:17892:-1
position: 17892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18557:-1
position: 18557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17892-18557:-1:exon

CCS41_RS14605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14605
old locus tag: CCS41_14370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002667247.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: division plane positioning ATPase MipZ
translation: MLGVMIILIGSHKGGVGKSTQFINVLMCLLLKGKKVVLLECDDQRSIKMWIDERREKKIPPDFDYHECYTNIRETALRLAKKNNIVLIDAPGRKSPEFRKCLSVADLFISLVDPTAQIEVNTLGEMVVDVKWVQSSINLGLKAFIVMNRCPTDPRDRDASTFYKMMNDDKDWLRVAHQRIYQRTAHKRAYNNALSVYEYNDKLSNKARGELDLLLAELGII
SIO_010081: CCS41_RS14605
subclass of: SO_0000673
so part of: CCS41_RS14605
location: complement(17892..18557)
location: region:17892-18557:-1
so has part: feature:17892-18557:-1:exon

WP_240313941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17892-18557:-1:exon

CCS41_RS14610
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14610
old locus tag: CCS41_14375
so part of: sequence
location: complement(18675..18920)
location: region:18675-18920:-1
so has part: feature:18675-18920:-1:exon
subclass of: SO_0000010

position:18675:-1
position: 18675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18920:-1
position: 18920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18675-18920:-1:exon

CCS41_RS14610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14610
old locus tag: CCS41_14375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKEKWNFLLSDNGENKTHHFHQKKRKCLFFSELVQKKTGIQQAEGALAVINVDIYPKTENPIPTLILQEYVNWLTLINSV
SIO_010081: CCS41_RS14610
subclass of: SO_0000673
so part of: CCS41_RS14610
location: complement(18675..18920)
location: region:18675-18920:-1
so has part: feature:18675-18920:-1:exon

WP_119797909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18675-18920:-1:exon

CCS41_RS14615
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14615
old locus tag: CCS41_14380
so part of: sequence
location: complement(18886..21021)
location: region:18886-21021:-1
so has part: feature:18886-21021:-1:exon
subclass of: SO_0000010

position:18886:-1
position: 18886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21021:-1
position: 21021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18886-21021:-1:exon

CCS41_RS14615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14615
old locus tag: CCS41_14380
EC number: 5.6.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011191426.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IA DNA topoisomerase
translation: MKTLYIAEKPQLGQVIADALGHPRRKNGYIECGQNIVTWCVGHLLELAPPEAHHPRYAKWTATDLPLKLRPPQYVAKPATQDQLDTIGELIKQADEIVHAGDPDDEGQLLVDEVLWFFNNTCPVKRVLINDLNVNAARKALANLRDNQEFYGLSQKALARSIGDQLYGFNMTRAYTLASQNKGLKSVLSVGRVQTPILGLIVNRYLAFKNHAAASYFNVSAQMMLDAGTVLAKLVVPEDAPVDNKGRIIDEQWSLNVANACQGKVATVTQASVEDKQTPAPLPFSLLDLQVQMSRQHGIDAEKALAVTQSLREKHKAITYNRSDCNYLSSEQYAEASETLAALSSLLPELADAFGQSDTQRKSRAFDDSKVSAHTAIIPTAERVDVNSMTADERVVYLAIVKQYLAQFLPEKCYQAAQVMFDVEGRGFIARATKLTLAGWTTLISASQDNDGDNTEEVGGTFSILATLHVGDTGRCEAVNISKEKTKPLPLYSEATLLKDLQRVAKYVSDPRIKQLLLARDEGKAGEHGGIGTPATRASMLATLQKRGFYTVEKKKLMPTPLGLGLIAALPSIASTPDMTALWHEQQKMIESGELTVDAFLNELEHFIAAQVNNVDLGTVQSVSADNTDTKAYCPMCGKPLFTSSKVMGCKACPFRLFPKIAGKTLTATQIEALLMKGKTGVIKGFRSKAGKSFDALLRLNGEGKVEFSFK
SIO_010081: CCS41_RS14615
subclass of: SO_0000673
so part of: CCS41_RS14615
location: complement(18886..21021)
location: region:18886-21021:-1
so has part: feature:18886-21021:-1:exon

WP_119797910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18886-21021:-1:exon

CCS41_RS14620
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14620
old locus tag: CCS41_14385
so part of: sequence
location: 21079..21459
location: region:21079-21459:1
so has part: feature:21079-21459:1:exon
subclass of: SO_0000010

position:21079:1
position: 21079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21459:1
position: 21459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21079-21459:1:exon

CCS41_RS14620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14620
old locus tag: CCS41_14385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003151133.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MITQEKQLIWIGSSKKDLMALPTNVRKFFGHALDFAQRGDQHDTAKVMKGFGGAGVLEIIEKDLGGTYRAVYTVKFEEAVFVLHCFQKKSKSGIATPKEDMNIIHARLKVAAAFAKRLLNNDKTNN
SIO_010081: CCS41_RS14620
subclass of: SO_0000673
so part of: CCS41_RS14620
location: 21079..21459
location: region:21079-21459:1
so has part: feature:21079-21459:1:exon

WP_119797911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21079-21459:1:exon

CCS41_RS14625
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14625
old locus tag: CCS41_14390
so part of: sequence
location: 21440..21775
location: region:21440-21775:1
so has part: feature:21440-21775:1:exon
subclass of: SO_0000010

position:21440:1
position: 21440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21775:1
position: 21775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21440-21775:1:exon

CCS41_RS14625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14625
old locus tag: CCS41_14390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018310970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTKQIIEGIEVEICSSNIFADMGLPNASKLKIKSGLVVEITKAIRKLDLTQQEAASRMGITQSKVSGMLRGDFSNLSERKLMNCLNRLGYDIEIKVKPAAASLGHVILAVA
SIO_010081: CCS41_RS14625
subclass of: SO_0000673
so part of: CCS41_RS14625
location: 21440..21775
location: region:21440-21775:1
so has part: feature:21440-21775:1:exon

WP_119797912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21440-21775:1:exon

CCS41_RS14630
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14630
old locus tag: CCS41_14395
so part of: sequence
location: complement(21827..22300)
location: region:21827-22300:-1
so has part: feature:21827-22300:-1:exon
subclass of: SO_0000010

position:21827:-1
position: 21827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22300:-1
position: 22300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21827-22300:-1:exon

CCS41_RS14630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14630
old locus tag: CCS41_14395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011988434.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MILFTPFSGKAFCFLAAGKMYQIDPLLLIAIAEVESSMNPKAIGLNKKNGVVKTEDIGLMQINSSWLPQLSHSFGITRKTLLNNACQNLYVGAYILAKNLSRHGVNWTSVGAYNAGFKQGNEKNRLKYAKKVYRKYRDLLSGNREVIIERASRGECI
SIO_010081: CCS41_RS14630
subclass of: SO_0000673
so part of: CCS41_RS14630
location: complement(21827..22300)
location: region:21827-22300:-1
so has part: feature:21827-22300:-1:exon

WP_240313942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21827-22300:-1:exon

CCS41_RS14635
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14635
old locus tag: CCS41_14400
so part of: sequence
location: complement(22349..22975)
location: region:22349-22975:-1
so has part: feature:22349-22975:-1:exon
subclass of: SO_0000010

position:22349:-1
position: 22349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22975:-1
position: 22975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22349-22975:-1:exon

CCS41_RS14635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14635
old locus tag: CCS41_14400
EC number: 3.4.23.43
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873092.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: prepilin peptidase
translation: MNIFLLFLLSSLSALMMAVYLPNIVARVERNILAQHKEIKTAAETTTPVNFRAAILLLNVAPLFYFFHSEEIELSLFIFLLAIASYIDIVRRWVPDSLLFLLSGYSVYCAASGRLGESPEDAIISALFFVIPFILINGASWIKCGVFVFAAGDIYIALSMGLWLDNASVVVVAGASILLALLYGSVLGKKNLPFIPFMLFSFLICGVI
SIO_010081: CCS41_RS14635
subclass of: SO_0000673
so part of: CCS41_RS14635
location: complement(22349..22975)
location: region:22349-22975:-1
so has part: feature:22349-22975:-1:exon

WP_119797914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22349-22975:-1:exon

CCS41_RS14640
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: pilM
locus tag: CCS41_RS14640
old locus tag: CCS41_14405
so part of: sequence
location: complement(22972..23403)
location: region:22972-23403:-1
so has part: feature:22972-23403:-1:exon
subclass of: SO_0000010

position:22972:-1
position: 22972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23403:-1
position: 23403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22972-23403:-1:exon

CCS41_RS14640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: pilM
locus tag: CCS41_RS14640
old locus tag: CCS41_14405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873831.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus biogenesis protein PilM
translation: MLNLNSVLVVFFIFLGSHLLNVIKEKDAEVTSQVADNLLTTTFILYADSLATFKKNHPLYTGAVTTQLPLPRWLAKNPEIKTSIHHGIGYVYMPSKPSLYQSLMMATENSSRLGVTNARQLITPTEAISKPSFIPKDYIVYLR
SIO_010081: CCS41_RS14640
subclass of: SO_0000673
so part of: CCS41_RS14640
location: complement(22972..23403)
location: region:22972-23403:-1
so has part: feature:22972-23403:-1:exon

WP_119797915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22972-23403:-1:exon

CCS41_RS14645
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: pilV
locus tag: CCS41_RS14645
old locus tag: CCS41_14410
so part of: sequence
location: complement(23443..24714)
location: region:23443-24714:-1
so has part: feature:23443-24714:-1:exon
subclass of: SO_0000010

position:23443:-1
position: 23443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24714:-1
position: 24714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23443-24714:-1:exon

CCS41_RS14645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: pilV
locus tag: CCS41_RS14645
old locus tag: CCS41_14410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011988423.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: shufflon system plasmid conjugative transfer pilus tip adhesin PilV
translation: MKYLKKGIWHISDASTGLGVGLLCFALIVAPLVYAFNKDQQYSTAASHARRVEKATNKYITDNALMIGKHATATSPYILDVPMLIKAGYLPAGFSAANNFSSRYHTRIYQPSALKFHHMIFLADGAPLSLSAARKIATRIGGSGGYVEGTVAKGVMGGWTENLSTFGGYNPGDGKVVIAGFFSQGAGKNDYLYRHAVPGQGELNTMRTALNMGRNNVDEVNALNANTVKTKTLHATRAAHINGNLHADGAITTAKTLLAKGDITTDGWLITKGDKGWYSEKGEGGWHMNDKIWIKAFNGKSIYTEGIVRGGYVKLDNISVAGAKCNENGLLSRDKTGAALSCQSGVWGASGKMDIVHGTNPACPANKIPIARYWTQAGGSNHGNYCHLQTGWAGVTHPSCESCVNWEKCHMVYSQTWSATACN
SIO_010081: CCS41_RS14645
subclass of: SO_0000673
so part of: CCS41_RS14645
location: complement(23443..24714)
location: region:23443-24714:-1
so has part: feature:23443-24714:-1:exon

WP_119797916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23443-24714:-1:exon

CCS41_RS14650
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14650
old locus tag: CCS41_14415
so part of: sequence
location: complement(24730..25689)
location: region:24730-25689:-1
so has part: feature:24730-25689:-1:exon
subclass of: SO_0000010

position:24730:-1
position: 24730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25689:-1
position: 25689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24730-25689:-1:exon

CCS41_RS14650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14650
old locus tag: CCS41_14415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011988446.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MATESRLKDAGFVDLYLGHDYCDIKGMIGESSRLAPAPACLADDIARLKSACLHCHQAENRNEFSLLFDERLYRVTVTRDAYKQLAFVIRQTPDRIRAINEVGLTSELITLISEEKKTGLILVSGAMGTGKTTTAAAIVSEKIKKSGLLGVAIEDPIETLLCGLHGTGRCIQLEVSENEDYSLALKRSMRMGANILFIGEIRDAITAHEALKASLNGAFVVATLHAASVMDAIERYSMLCNEMHQHANPIIAKSLFMVTHQRLKAVNRDGQVVAHHVSLEGYHIQSVAAIKAKIKDGNFGSLIDDFNSIDQQRLRQPAR
SIO_010081: CCS41_RS14650
subclass of: SO_0000673
so part of: CCS41_RS14650
location: complement(24730..25689)
location: region:24730-25689:-1
so has part: feature:24730-25689:-1:exon

WP_119797917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24730-25689:-1:exon

CCS41_RS14655
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14655
old locus tag: CCS41_14420
so part of: sequence
location: complement(25699..26211)
location: region:25699-26211:-1
so has part: feature:25699-26211:-1:exon
subclass of: SO_0000010

position:25699:-1
position: 25699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26211:-1
position: 26211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25699-26211:-1:exon

CCS41_RS14655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14655
old locus tag: CCS41_14420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873833.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4 pilus major pilin
translation: MKSFKKGFLNLIDASTVWSMAFVGLAMIAMSVAVYVSMCSTSAMTTTLKQLFNQTQSLRTATGYGTGDLVPALIRSGALPKDLSVVDNTLFFNATGGAITVTGNDTGFIVSTTGIDQKYCWRLAMIADNVNSGSTRINSAAAMVGKISLDQASAACVVGKSNTVTFTLDS
SIO_010081: CCS41_RS14655
subclass of: SO_0000673
so part of: CCS41_RS14655
location: complement(25699..26211)
location: region:25699-26211:-1
so has part: feature:25699-26211:-1:exon

WP_119797976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25699-26211:-1:exon

CCS41_RS14660
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14660
old locus tag: CCS41_14425
so part of: sequence
location: complement(26250..26759)
location: region:26250-26759:-1
so has part: feature:26250-26759:-1:exon
subclass of: SO_0000010

position:26250:-1
position: 26250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26759:-1
position: 26759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26250-26759:-1:exon

CCS41_RS14660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14660
old locus tag: CCS41_14425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873095.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4 pilus major pilin
translation: MKSLKKGIFSITDVSTGWGMTLVGLAIVVAAGVGLYIKVNSTSALTSINTLLNETKSLRMSTGYGTANLVPALIRSGAVPKGISIIGDTLFNSAGGAITVTGRGIGFVVSTAGINEKDCMKLVTTLGNGDIASTRINSAAAMVGEISPAQASAACVAGKNNTVTFTTNM
SIO_010081: CCS41_RS14660
subclass of: SO_0000673
so part of: CCS41_RS14660
location: complement(26250..26759)
location: region:26250-26759:-1
so has part: feature:26250-26759:-1:exon

WP_119797918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26250-26759:-1:exon

CCS41_RS16910
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16910
so part of: sequence
location: complement(26772..27230)
location: region:26772-27230:-1
so has part: feature:26772-27230:-1:exon
subclass of: SO_0000010

position:26772:-1
position: 26772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27230:-1
position: 27230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26772-27230:-1:exon

CCS41_RS16910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16910
inference: COORDINATES: protein motif:HMM:NF012694.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II secretion system F family protein
translation: MLCRSIPPYSFYKQRQGATFITSIDALLSSNIPLKNALIKMREMSQSAWLIEKINGALARLADGEENLGSALDTAGYEFPSEDAIIKMQSLFETTNQEGSLERFGDRLLEKTLLNVERQGNVIKVVSMFSGAAATVGIVGIMYSLIEIAINF
SIO_010081: CCS41_RS16910
subclass of: SO_0000673
so part of: CCS41_RS16910
location: complement(26772..27230)
location: region:26772-27230:-1
so has part: feature:26772-27230:-1:exon

WP_240313960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26772-27230:-1:exon

CCS41_RS14665
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14665
old locus tag: CCS41_14430
so part of: sequence
location: complement(27128..27835)
location: region:27128-27835:-1
so has part: feature:27128-27835:-1:exon
subclass of: SO_0000010

position:27128:-1
position: 27128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27835:-1
position: 27835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27128-27835:-1:exon

CCS41_RS14665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14665
old locus tag: CCS41_14430
inference: COORDINATES: protein motif:HMM:NF012694.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II secretion system F family protein
translation: MNKFQRWLCKLTLNSDDREAIYDNFRHYLLDGQSLEKTFDKMIVNYTRRGKKPNNEIAQILTECAAHLKEGHSLGEALKDWFPEQELSVIDACNIAGRPWDGFKKAMKIATSTDRLKKAIRGAMLTSAYLFSLSFIILAMACVMLVPFLLESVPLVRWSLAQKGVYYFYIFIVSYGWLLIIGFIIFCSIIAYTMPRWVGKKRFYADQFPLIPFTNNGKAPPLLPVLMPYCHRIFR
SIO_010081: CCS41_RS14665
subclass of: SO_0000673
so part of: CCS41_RS14665
location: complement(27128..27835)
location: region:27128-27835:-1
so has part: feature:27128-27835:-1:exon

WP_240313943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27128-27835:-1:exon

CCS41_RS14670
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14670
old locus tag: CCS41_14435
so part of: sequence
location: complement(27828..29369)
location: region:27828-29369:-1
so has part: feature:27828-29369:-1:exon
subclass of: SO_0000010

position:27828:-1
position: 27828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29369:-1
position: 29369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27828-29369:-1:exon

CCS41_RS14670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14670
old locus tag: CCS41_14435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011988476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MKVISLSGSHAVPDYRLPPKLNDAICLVKGDDGALTLKVALPFIDCLEVMDYERRLKANNVQFTLMSCALSDIVELKKSAESDGENEEDKSTKTIQKRIIKILSDAVEKRASDVHIRLEKIFCKVYFRIDGKLAYYGEYAAAEGSRYINCLYNTMCINQSHASVSYSESSDAKVREEYVQALGLTGGRFGSRASGEGLAVAIRLIARRDKALAMRELGLTAQQEDTLERAISKPSGMIFFTGNTGSGKSTLVQVISELITARDPGINLMTVEDPIESPIKGAVQTALGAKEAWWQAIKSLMRLDIDWIVMGEVRDSLSALAAIQAAQTGHFVLTTLHTSHPIDTLTRLKGLNVDSDLLSDASLITCLVGQSLAPKLCPQCKKKYTAHKKEVQPIFNGLIEQFCRPEQVYLKNASGCEQCNGKGVKGRTGIFEVIEIDAQFMHLYHTCGKTSAYNYWYENGGSTLCENTLRLINAGIIDPVSSHKNICNLDRDCLVFTDVVRETAKRHRESRHE
SIO_010081: CCS41_RS14670
subclass of: SO_0000673
so part of: CCS41_RS14670
location: complement(27828..29369)
location: region:27828-29369:-1
so has part: feature:27828-29369:-1:exon

WP_119797919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27828-29369:-1:exon

CCS41_RS14675
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: pilP
locus tag: CCS41_RS14675
old locus tag: CCS41_14440
so part of: sequence
location: complement(29366..29809)
location: region:29366-29809:-1
so has part: feature:29366-29809:-1:exon
subclass of: SO_0000010

position:29366:-1
position: 29366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29809:-1
position: 29809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29366-29809:-1:exon

CCS41_RS14675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: pilP
locus tag: CCS41_RS14675
old locus tag: CCS41_14440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873098.1
GO process: GO:0009297 - pilus assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV pilus biogenesis protein PilP
translation: MANRNRVNVIKIFLFLFSFFPLLLRANPEIKTVGELDALQSQTTYYKALAARNKAKEEVGLITPHQTGRLVETPANARHRDPLPHISKIIGNGKTIDVRLRFADGTEMTRKKGDLIPGGFTLSQVSLDEVIITNAAGNKILLSEVAP
SIO_010081: CCS41_RS14675
subclass of: SO_0000673
so part of: CCS41_RS14675
location: complement(29366..29809)
location: region:29366-29809:-1
so has part: feature:29366-29809:-1:exon

WP_119797920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29366-29809:-1:exon

CCS41_RS16915
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: pilO2
locus tag: CCS41_RS16915
so part of: sequence
location: complement(29796..30254)
location: region:29796-30254:-1
so has part: feature:29796-30254:-1:exon
subclass of: SO_0000010

position:29796:-1
position: 29796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30254:-1
position: 30254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29796-30254:-1:exon

CCS41_RS16915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: pilO2
locus tag: CCS41_RS16915
inference: COORDINATES: protein motif:HMM:NF018562.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4b pilus protein PilO2
translation: MLFARLEGSAVGASDFKSGVEKHFSVTPAFNVKQPDAAVFFVPIKPVPEGDDPLLPLSHQLDKLITLLQRHNVIFTLTDVPPPEKKTDEPGFEHPLPHWREMNFSYDSRVTPRLIFKNEAMRGMRITAITFVINQDSADIKYKVQGVIYGKP
SIO_010081: CCS41_RS16915
subclass of: SO_0000673
so part of: CCS41_RS16915
location: complement(29796..30254)
location: region:29796-30254:-1
so has part: feature:29796-30254:-1:exon

WP_240313944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29796-30254:-1:exon

CCS41_RS14680
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: pilO2
locus tag: CCS41_RS14680
old locus tag: CCS41_14445
so part of: sequence
location: complement(30194..31114)
location: region:30194-31114:-1
so has part: feature:30194-31114:-1:exon
subclass of: SO_0000010

position:30194:-1
position: 30194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31114:-1
position: 31114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30194-31114:-1:exon

CCS41_RS14680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: pilO2
locus tag: CCS41_RS14680
old locus tag: CCS41_14445
inference: COORDINATES: protein motif:HMM:NF018562.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4b pilus protein PilO2
translation: MTSNEKKPIRLVTYNNKVFVVGLEWRAIKGGLHYMKEVKAIGKRENLDVVAIRQNDSIQAGFAPKFTVPLKGKYSLAVSLVSLIPGKWLAVIPLNKDDLNTDYIVMASTGGLVMPWTDKIVSPAVLEQEVVDITSRLAKGEGEFKVFGDKRFLWVTDDLSLTALLTVKNLKKEFKLKPLTWGLTKKERVSWAVFLVFLLIAFSFFNRYQQNKEHKARLLAIEKQKLADDINKEARYKAALLSLKHPWVDKPSIQHFIQRCDQTLQQIPLSLGDGYRRRSIVFMIRRKCFLPGWRALPSVQVISNPV
SIO_010081: CCS41_RS14680
subclass of: SO_0000673
so part of: CCS41_RS14680
location: complement(30194..31114)
location: region:30194-31114:-1
so has part: feature:30194-31114:-1:exon

WP_240313945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30194-31114:-1:exon

CCS41_RS14685
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14685
old locus tag: CCS41_14450
so part of: sequence
location: complement(31104..31319)
location: region:31104-31319:-1
so has part: feature:31104-31319:-1:exon
subclass of: SO_0000010

position:31104:-1
position: 31104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31319:-1
position: 31319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31104-31319:-1:exon

CCS41_RS14685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14685
old locus tag: CCS41_14450
inference: COORDINATES: protein motif:HMM:NF015807.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Arc family DNA-binding protein
translation: MLKPILLVCQGCLSGESMVKGAREMAQFKLRIPDELLKELKQAAKENMRSVNAEILLRLVKEDYRKRINDF
SIO_010081: CCS41_RS14685
subclass of: SO_0000673
so part of: CCS41_RS14685
location: complement(31104..31319)
location: region:31104-31319:-1
so has part: feature:31104-31319:-1:exon

WP_240313946.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31104-31319:-1:exon

CCS41_RS14690
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14690
old locus tag: CCS41_14455
so part of: sequence
location: 31379..31657
location: region:31379-31657:1
so has part: feature:31379-31657:1:exon
subclass of: SO_0000010

position:31379:1
position: 31379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31657:1
position: 31657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31379-31657:1:exon

CCS41_RS14690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14690
old locus tag: CCS41_14455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873100.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MKIEYDTLKNQRNIAERSIDFNSVKDFDFATAFFFIDKRKSYPEIRYIAVGYLKKRLHVLCFSKINNGIRVISFRKANAREGVKYEKLLTLD
SIO_010081: CCS41_RS14690
subclass of: SO_0000673
so part of: CCS41_RS14690
location: 31379..31657
location: region:31379-31657:1
so has part: feature:31379-31657:1:exon

WP_119797921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31379-31657:1:exon

CCS41_RS14695
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14695
old locus tag: CCS41_14460
so part of: sequence
location: 31632..31919
location: region:31632-31919:1
so has part: feature:31632-31919:1:exon
subclass of: SO_0000010

position:31632:1
position: 31632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31919:1
position: 31919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31632-31919:1:exon

CCS41_RS14695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14695
old locus tag: CCS41_14460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873458.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MKNYLPLIDEQGEVRELTEKDFALMLPAEEVLPLSLLKTLRIRGRQKAPTKTKITIRLSPEVVEQFRATGKHWQSRMDAAMKNWLIDHSPSDLRL
SIO_010081: CCS41_RS14695
subclass of: SO_0000673
so part of: CCS41_RS14695
location: 31632..31919
location: region:31632-31919:1
so has part: feature:31632-31919:1:exon

WP_119797922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31632-31919:1:exon

CCS41_RS14700
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14700
old locus tag: CCS41_14465
so part of: sequence
location: complement(31929..32147)
location: region:31929-32147:-1
so has part: feature:31929-32147:-1:exon
subclass of: SO_0000010

position:31929:-1
position: 31929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32147:-1
position: 32147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31929-32147:-1:exon

CCS41_RS14700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14700
old locus tag: CCS41_14465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004171982.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNHCINSINKNVGYSSCDSPAVFILNNGQDTFALHLEILLDCLRMAQDHGHVPALDSAWWQQAINYVDKQL
SIO_010081: CCS41_RS14700
subclass of: SO_0000673
so part of: CCS41_RS14700
location: complement(31929..32147)
location: region:31929-32147:-1
so has part: feature:31929-32147:-1:exon

WP_119797923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31929-32147:-1:exon

CCS41_RS14705
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14705
old locus tag: CCS41_14470
so part of: sequence
location: 32336..32623
location: region:32336-32623:1
so has part: feature:32336-32623:1:exon
subclass of: SO_0000010

position:32336:1
position: 32336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32623:1
position: 32623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32336-32623:1:exon

CCS41_RS14705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14705
old locus tag: CCS41_14470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015446388.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MSTTTIRLTDELKARVAAAAEHADTTPHNFILQAIAEKTLQEELRNDFNEEAEKRYAKIIATGETIPWHEMRRYLESHLTAGSHQTRPVARKLGC
SIO_010081: CCS41_RS14705
subclass of: SO_0000673
so part of: CCS41_RS14705
location: 32336..32623
location: region:32336-32623:1
so has part: feature:32336-32623:1:exon

WP_119797924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32336-32623:1:exon

CCS41_RS14710
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14710
old locus tag: CCS41_14475
so part of: sequence
location: 32624..32923
location: region:32624-32923:1
so has part: feature:32624-32923:1:exon
subclass of: SO_0000010

position:32624:1
position: 32624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32923:1
position: 32923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32624-32923:1:exon

CCS41_RS14710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14710
old locus tag: CCS41_14475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004359135.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MSKIELAPEVGDDIDRIIEHLTQYKVIDMTSRIQEIIQAIAVLEHNPLIGRPVSGDKRELVIGHRSRGYMALYRYLSDIDTVFVLALRSQKELGYASRP
SIO_010081: CCS41_RS14710
subclass of: SO_0000673
so part of: CCS41_RS14710
location: 32624..32923
location: region:32624-32923:1
so has part: feature:32624-32923:1:exon

WP_119797925.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32624-32923:1:exon

CCS41_RS16920
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16920
so part of: sequence
location: complement(32920..33840)
location: region:32920-33840:-1
so has part: feature:32920-33840:-1:exon
subclass of: SO_0000010

position:32920:-1
position: 32920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33840:-1
position: 33840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32920-33840:-1:exon

CCS41_RS16920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16920
inference: COORDINATES: protein motif:HMM:NF012485.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANDLYGDIQKTAESMLTPGVGRVTMNQTSGVVVVTDVPEVVRSIGDYLRDENTKLSKQVLLKVVVYTVHTDISDKLGIDWDIVFQSLSGKYGIHLANAFNAGSDLSQGGFEILQTATGRASQFAGSKFLLQALSEQVTVSDVKTLSIMTTNLATAGMQIGKQTTYLRKTSVTTGNATTGSEPVQSLEPGEITTGTNIHIMPKILADNEKMMLTMMMDISSLNKLRKIENKNKTESIEAPDTDSRSIPQRVWLKPGETVIMSGFEQNIQEGSQQGVGSPGNFLFGGGMSGKSKKESFVITITPLLR
SIO_010081: CCS41_RS16920
subclass of: SO_0000673
so part of: CCS41_RS16920
location: complement(32920..33840)
location: region:32920-33840:-1
so has part: feature:32920-33840:-1:exon

WP_240313947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32920-33840:-1:exon

CCS41_RS16925
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16925
so part of: sequence
location: complement(33789..34619)
location: region:33789-34619:-1
so has part: feature:33789-34619:-1:exon
subclass of: SO_0000010

position:33789:-1
position: 33789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34619:-1
position: 34619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33789-34619:-1:exon

CCS41_RS16925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16925
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIQFLVICIGVALSLSGCAVNRRVNTLMEGAQTDSDKVSSMLQAASTARPAVQFHEAQWVNPVPIKSVTAVLPPEMVRCHITYKPAKPQTIYQFSQDVTQQCGIRVKISPDAAAMLSRGASDRGGSGQTQQMDQVPAPLPSVDSNGMMPLQAMGAPMGRPSSASAPASNTITDVAYSGHVSRLLDLVTARLGISWRYERGAITLFYLETQRFTIDPTNAKYWIKNNQKSGLSTQSGSSSGSSGRGCPVIVVPAPRNKLKWRMICMVISKKRQKVC
SIO_010081: CCS41_RS16925
subclass of: SO_0000673
so part of: CCS41_RS16925
location: complement(33789..34619)
location: region:33789-34619:-1
so has part: feature:33789-34619:-1:exon

WP_240313948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33789-34619:-1:exon

CCS41_RS14720
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14720
old locus tag: CCS41_14485
so part of: sequence
location: complement(34621..35325)
location: region:34621-35325:-1
so has part: feature:34621-35325:-1:exon
subclass of: SO_0000010

position:34621:-1
position: 34621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35325:-1
position: 35325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34621-35325:-1:exon

CCS41_RS14720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14720
old locus tag: CCS41_14485
inference: COORDINATES: protein motif:HMM:NF022136.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toxin co-regulated pilus biosynthesis Q family protein
translation: MRIEPVIGMSLLACLLSACSSPPTLPEPKGVFIPANPEMPSYLSATNKSKILQTNKTNSKIRSVGVDTGKTVTDKISQPVVKPASNSISRPQKTEMLKSVVKPVTLPPPSPVSVGKNPFSATGAPIKAGIIPIVKPVPPPRIWRVKPGRTLKHVFMKWADDEKCHATKRWSVRWNTQTDYLIDSPLTFTGSFEAMTQKLFSLYRHANTPLYVDGYKAQCLIIINDPDKDQKKGR
SIO_010081: CCS41_RS14720
subclass of: SO_0000673
so part of: CCS41_RS14720
location: complement(34621..35325)
location: region:34621-35325:-1
so has part: feature:34621-35325:-1:exon

WP_119797926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34621-35325:-1:exon

CCS41_RS14725
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14725
old locus tag: CCS41_14490
so part of: sequence
location: complement(35415..35729)
location: region:35415-35729:-1
so has part: feature:35415-35729:-1:exon
subclass of: SO_0000010

position:35415:-1
position: 35415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35729:-1
position: 35729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35415-35729:-1:exon

CCS41_RS14725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14725
old locus tag: CCS41_14490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000754361.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbM/KikA/MpfK family conjugal transfer protein
translation: MKKTVIAAALLCLAASPAVFSAQEVDSNDACAVFLCMAGKVQGANPAECSGTVGKFFSINAFKKKHRFNPLKTLDMRKQFLGNCASADPDYVRKILSKFGRLRG
SIO_010081: CCS41_RS14725
subclass of: SO_0000673
so part of: CCS41_RS14725
location: complement(35415..35729)
location: region:35415-35729:-1
so has part: feature:35415-35729:-1:exon

WP_119797927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35415-35729:-1:exon

CCS41_RS14730
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14730
old locus tag: CCS41_14495
so part of: sequence
location: complement(35753..37303)
location: region:35753-37303:-1
so has part: feature:35753-37303:-1:exon
subclass of: SO_0000010

position:35753:-1
position: 35753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37303:-1
position: 37303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35753-37303:-1:exon

CCS41_RS14730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14730
old locus tag: CCS41_14495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017684962.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MFPPILIGKHPTDDDFLASYGQTFVMLAAAPGTGKGVGMVIPNALTYPDSMVINDPKFENWHLTAGFRASCGQAVYRFSPEMLETHRWNPLSRLNRDPLFRLGEIKAMASVLFVPDNPKNASFFGASADIFTALVLYLMETPSLPFTLPQIYEIAAQGMALGEWAKKELDARSNGNTPLSSECLREMNRLVSSSQSKTGWPITQDILNKRLSLYGEKTVAWAVSGDDIKFDDLRRKKMTVYFCVTEGALLKFGALMNLFYSQAIAANSKILPEYGGNNPDGTLIYQYQVLFLMDEFAVMGVIEKMKTALALTRGAGLRYLIIFQGKAQLRADELYGVQGANSIMDAVHIEVVYAPGNIDAATEYSKRLGNTTVKVANFSENYGEKKTRSKSYSDQARPLMLPQEVNELPYDKALIFVQATDKTPALKILARKIVWYQEAVFQARVNLPLPAVPVGDVNAIAALVVPMNINKPMANVTLAPPHDLGMNEEQQRRRMSTEDKSINDPDYVEITENDLP
SIO_010081: CCS41_RS14730
subclass of: SO_0000673
so part of: CCS41_RS14730
location: complement(35753..37303)
location: region:35753-37303:-1
so has part: feature:35753-37303:-1:exon

WP_119797978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35753-37303:-1:exon

CCS41_RS14735
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14735
old locus tag: CCS41_14500
so part of: sequence
location: complement(37357..37695)
location: region:37357-37695:-1
so has part: feature:37357-37695:-1:exon
subclass of: SO_0000010

position:37357:-1
position: 37357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37695:-1
position: 37695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37357-37695:-1:exon

CCS41_RS14735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14735
old locus tag: CCS41_14500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENSDNSHCADDGVFCDRFICRRGVYLALIGGNFRQATLRTLMEAGAFSLFHRQKIFLPWAWCVTVALTFLPLGLTLFALLLGKNKKTTLHGDARFATPKELKAFKYRGNYQ
SIO_010081: CCS41_RS14735
subclass of: SO_0000673
so part of: CCS41_RS14735
location: complement(37357..37695)
location: region:37357-37695:-1
so has part: feature:37357-37695:-1:exon

WP_240313949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37357-37695:-1:exon

CCS41_RS14740
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: virB11
locus tag: CCS41_RS14740
old locus tag: CCS41_14505
pseudo: true
so part of: sequence
location: complement(37685..38736)
location: region:37685-38736:-1
so has part: feature:37685-38736:-1:exon
subclass of: SO_0000010

position:37685:-1
position: 37685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38736:-1
position: 38736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37685-38736:-1:exon

CCS41_RS14740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: virB11
locus tag: CCS41_RS14740
old locus tag: CCS41_14505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001773466.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
SIO_010081: CCS41_RS14740
subclass of: SO_0000673
so part of: CCS41_RS14740
location: complement(37685..38736)
location: region:37685-38736:-1
so has part: feature:37685-38736:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37685-38736:-1:exon

CCS41_RS14745
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14745
old locus tag: CCS41_14510
pseudo: true
so part of: sequence
location: complement(38741..>39373)
location: region:38741-39373:-1
so has part: feature:38741-39373:-1:exon
subclass of: SO_0000010

position:38741:-1
position: 38741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39373:-1
position: 39373
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38741-39373:-1:exon

CCS41_RS14745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14745
old locus tag: CCS41_14510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017684943.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
SIO_010081: CCS41_RS14745
subclass of: SO_0000673
so part of: CCS41_RS14745
location: complement(38741..>39373)
location: region:38741-39373:-1
so has part: feature:38741-39373:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38741-39373:-1:exon

CCS41_RS15810
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15810
so part of: sequence
location: 39601..39885
location: region:39601-39885:1
so has part: feature:39601-39885:1:exon
subclass of: SO_0000010

position:39601:1
position: 39601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39885:1
position: 39885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39601-39885:1:exon

CCS41_RS15810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15810
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGIGGVFFDAVETVTSDGSVGGGTTTLISSFSLLVMKFFIASSLLTVRCRATSAFTLDSSIGLFLLMWLEAVMMMTVTAISSPRPIPRRLEGW
SIO_010081: CCS41_RS15810
subclass of: SO_0000673
so part of: CCS41_RS15810
location: 39601..39885
location: region:39601-39885:1
so has part: feature:39601-39885:1:exon

WP_162860127.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39601-39885:1:exon

CCS41_RS14760
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14760
old locus tag: CCS41_14525
so part of: sequence
location: complement(39981..40784)
location: region:39981-40784:-1
so has part: feature:39981-40784:-1:exon
subclass of: SO_0000010

position:39981:-1
position: 39981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40784:-1
position: 40784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39981-40784:-1:exon

CCS41_RS14760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14760
old locus tag: CCS41_14525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705279.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
translation: MKKWMAATLICAVFSSGVDAETVGKGASLDKRIRTALYSPDNVYRLNTMKNRTSTIQFPPGETVNRGSGLIATGNPGAWVIGANQDGNMVVVKPDINATDANTNVIINTNKHTYIVELKLTDNPAAMTYLLRFNYPVPPKPEESPFKGRQRNKNPCEGRINRNYQKRGDMSLSPYEIWDNGTFTCLRFPTNAPRPVIYQVLPDGTETLANLRSVNDIMVVHGVSQRFRLRLNRLVLELRTEQNNTGWYNDNGTTTGKVREVKNAGKE
SIO_010081: CCS41_RS14760
subclass of: SO_0000673
so part of: CCS41_RS14760
location: complement(39981..40784)
location: region:39981-40784:-1
so has part: feature:39981-40784:-1:exon

WP_119797931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39981-40784:-1:exon

CCS41_RS14765
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14765
old locus tag: CCS41_14530
so part of: sequence
location: complement(40789..41589)
location: region:40789-41589:-1
so has part: feature:40789-41589:-1:exon
subclass of: SO_0000010

position:40789:-1
position: 40789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41589:-1
position: 41589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40789-41589:-1:exon

CCS41_RS14765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14765
old locus tag: CCS41_14530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705278.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MLSRKDKKQVITQEKKIIYGDEELSGKEKEIGQAVQAYTHAAKWFEKNVAEGYRRQARNSRYLSIFFGVLAFMSMGAVLGLTPLKTVAPYLVRVDNNSGYTDIVAPLTAGKKPEQVQDEYWLATYVRTYESYNWSSQTSNYALIKLLSHSEPFTEYKNFQLSSKGYTEVLGKNLQIRTKINNVVPLRAARGAELQADKNIKTYQVRFTKTILDRNGNPDPQSQITHWLATVSFDYNNPSVTQEDRWLNPMEFGVHAYSKTQEVKGG
SIO_010081: CCS41_RS14765
subclass of: SO_0000673
so part of: CCS41_RS14765
location: complement(40789..41589)
location: region:40789-41589:-1
so has part: feature:40789-41589:-1:exon

WP_119797932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40789-41589:-1:exon

CCS41_RS14770
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14770
old locus tag: CCS41_14535
so part of: sequence
location: complement(41802..42752)
location: region:41802-42752:-1
so has part: feature:41802-42752:-1:exon
subclass of: SO_0000010

position:41802:-1
position: 41802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42752:-1
position: 42752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41802-42752:-1:exon

CCS41_RS14770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14770
old locus tag: CCS41_14535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705276.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MDVHIAQTLYQAIDEGLKSTIATGTANVMTATGVIFGTCWLIHLTMKSIYWLFQGLDMAFQDLLLTIGKASFIIYFAFNVSWYIDTVVPVVNGLPNWMAQTLSSSGLAQSNQVDTVISTFFTALQNTIGAIKFSIWDEAAAMWLGFLALLFFLLGGIPFIMVVVGTLITLKAATSIILVVGPVFIAFSLFDQTRQWFWGWLSVIGGFMLTQILFGVVLAIEFNFINSVIINNGKIDTDILSCFSILLYFSAFTLLATELPNYAASIMGGAPSGGVSSVGGIVGRGSGLRAAGNMSKATGKSIMKGVNKFRNRNSIG
SIO_010081: CCS41_RS14770
subclass of: SO_0000673
so part of: CCS41_RS14770
location: complement(41802..42752)
location: region:41802-42752:-1
so has part: feature:41802-42752:-1:exon

WP_119797933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41802-42752:-1:exon

CCS41_RS14775
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14775
old locus tag: CCS41_14540
so part of: sequence
location: complement(42776..43174)
location: region:42776-43174:-1
so has part: feature:42776-43174:-1:exon
subclass of: SO_0000010

position:42776:-1
position: 42776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43174:-1
position: 43174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42776-43174:-1:exon

CCS41_RS14775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14775
old locus tag: CCS41_14540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705835.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYLFNGVSGLATTKRGLTMQYRKAGMARMVLLALALLLTGCKDKGKAFVGHWVEITNNEHPTDMKITYDNGVFHIDKNEYYALGLADYKLKKLEATAKSDNVLTVMDRFGKTMRLNDGVISFDNAEFKKQD
SIO_010081: CCS41_RS14775
subclass of: SO_0000673
so part of: CCS41_RS14775
location: complement(42776..43174)
location: region:42776-43174:-1
so has part: feature:42776-43174:-1:exon

WP_006705275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42776-43174:-1:exon

CCS41_RS14780
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14780
old locus tag: CCS41_14545
so part of: sequence
location: complement(43158..43535)
location: region:43158-43535:-1
so has part: feature:43158-43535:-1:exon
subclass of: SO_0000010

position:43158:-1
position: 43158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43535:-1
position: 43535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43158-43535:-1:exon

CCS41_RS14780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14780
old locus tag: CCS41_14545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016858020.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MVTAVPLLGGSHSQSDYKAALELVDYLIENDDENPLIDILAVKIAEYEEHNEQFYEFNKALEGMSTGVTALRVLMDQYNLKQTDLKNEIGSRSLVSQILSGKRSLTIDHIRSLSARFNVRCEVFI
SIO_010081: CCS41_RS14780
subclass of: SO_0000673
so part of: CCS41_RS14780
location: complement(43158..43535)
location: region:43158-43535:-1
so has part: feature:43158-43535:-1:exon

WP_119797934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43158-43535:-1:exon

CCS41_RS14785
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14785
old locus tag: CCS41_14550
so part of: sequence
location: complement(43529..43924)
location: region:43529-43924:-1
so has part: feature:43529-43924:-1:exon
subclass of: SO_0000010

position:43529:-1
position: 43529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43924:-1
position: 43924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43529-43924:-1:exon

CCS41_RS14785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14785
old locus tag: CCS41_14550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705833.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIVLDTHVLVWWVADDSMLSVTAKAAIEEEQAKGEIIISSISAWEIAMLVQRERLLLSMDVDSWLATVSQIDAVRFVPVDTEVATKSVELPGEFHKDPSDRMIVATARKLAVPLVTKDEKIRTYAHVRTIW
SIO_010081: CCS41_RS14785
subclass of: SO_0000673
so part of: CCS41_RS14785
location: complement(43529..43924)
location: region:43529-43924:-1
so has part: feature:43529-43924:-1:exon

WP_119797935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43529-43924:-1:exon

CCS41_RS14790
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14790
old locus tag: CCS41_14555
so part of: sequence
location: complement(43921..44157)
location: region:43921-44157:-1
so has part: feature:43921-44157:-1:exon
subclass of: SO_0000010

position:43921:-1
position: 43921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44157:-1
position: 44157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43921-44157:-1:exon

CCS41_RS14790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14790
old locus tag: CCS41_14555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705272.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system Phd/YefM family antitoxin
translation: MNVNQVSKSEFKSKALEYFRQIEASGASLIVTDHGKPALEIRPYQNIVRNPLEVLRGSVVSYVNPTAPISADDWEAAQ
SIO_010081: CCS41_RS14790
subclass of: SO_0000673
so part of: CCS41_RS14790
location: complement(43921..44157)
location: region:43921-44157:-1
so has part: feature:43921-44157:-1:exon

WP_006705272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43921-44157:-1:exon

CCS41_RS14795
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14795
old locus tag: CCS41_14560
so part of: sequence
location: complement(44239..44496)
location: region:44239-44496:-1
so has part: feature:44239-44496:-1:exon
subclass of: SO_0000010

position:44239:-1
position: 44239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44496:-1
position: 44496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44239-44496:-1:exon

CCS41_RS14795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14795
old locus tag: CCS41_14560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707616.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQYRKAGMARMVLLALALLLTGCKDKGEAFVGHWVQVKVKEGKKASSLDIELDEIASEHRISPITCLASGLIFPNMTSLIRYLLH
SIO_010081: CCS41_RS14795
subclass of: SO_0000673
so part of: CCS41_RS14795
location: complement(44239..44496)
location: region:44239-44496:-1
so has part: feature:44239-44496:-1:exon

WP_119797936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44239-44496:-1:exon

CCS41_RS14800
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14800
old locus tag: CCS41_14565
so part of: sequence
location: complement(44537..44947)
location: region:44537-44947:-1
so has part: feature:44537-44947:-1:exon
subclass of: SO_0000010

position:44537:-1
position: 44537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44947:-1
position: 44947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44537-44947:-1:exon

CCS41_RS14800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14800
old locus tag: CCS41_14565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016858020.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MITEAIQATRALVTAVPLLGGSHAQSDYKAALELVDYLIENDDENPLIDILAVKIAEYEEHNEQFYEFNKALEGMSTGVAALRVLMDQYNLKQTDLKNEIGSRSLVSQILSGKRSLTIDHIRSLSARFNVRCEVFI
SIO_010081: CCS41_RS14800
subclass of: SO_0000673
so part of: CCS41_RS14800
location: complement(44537..44947)
location: region:44537-44947:-1
so has part: feature:44537-44947:-1:exon

WP_119797937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44537-44947:-1:exon

CCS41_RS14805
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14805
old locus tag: CCS41_14570
so part of: sequence
location: complement(44944..45255)
location: region:44944-45255:-1
so has part: feature:44944-45255:-1:exon
subclass of: SO_0000010

position:44944:-1
position: 44944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45255:-1
position: 45255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44944-45255:-1:exon

CCS41_RS14805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14805
old locus tag: CCS41_14570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016233494.1
GO function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HigB family toxin
translation: MHIISKEPFEAAHRKYGRDAYAIVSTYKYLKDNNFKNPEELKNIFPSLDKFKYRDKWWVIDIGGNHLRLIVYINFINKRVYIKHIVTHSEYDKLNKYYREHKK
SIO_010081: CCS41_RS14805
subclass of: SO_0000673
so part of: CCS41_RS14805
location: complement(44944..45255)
location: region:44944-45255:-1
so has part: feature:44944-45255:-1:exon

WP_119797938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44944-45255:-1:exon

CCS41_RS14810
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: vapB
locus tag: CCS41_RS14810
old locus tag: CCS41_14575
so part of: sequence
location: complement(45333..45566)
location: region:45333-45566:-1
so has part: feature:45333-45566:-1:exon
subclass of: SO_0000010

position:45333:-1
position: 45333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45566:-1
position: 45566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45333-45566:-1:exon

CCS41_RS14810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: vapB
locus tag: CCS41_RS14810
old locus tag: CCS41_14575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857450.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapB family antitoxin
translation: MKRTVAIFKNGRNRAIRLPVEMDFAGVNELLIEREGDTLMLKPIRPTWTTFTDNSEKADADFLLDRETVLEEGHFSL
SIO_010081: CCS41_RS14810
subclass of: SO_0000673
so part of: CCS41_RS14810
location: complement(45333..45566)
location: region:45333-45566:-1
so has part: feature:45333-45566:-1:exon

WP_119797939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45333-45566:-1:exon

CCS41_RS14815
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14815
old locus tag: CCS41_14580
so part of: sequence
location: complement(45631..46323)
location: region:45631-46323:-1
so has part: feature:45631-46323:-1:exon
subclass of: SO_0000010

position:45631:-1
position: 45631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46323:-1
position: 46323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45631-46323:-1:exon

CCS41_RS14815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14815
old locus tag: CCS41_14580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705832.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MTDLAKRRKTTMATILVAGMCLFTSGSQAGVPTISPEGLAQQNAYAKQQAREAVAQLNKAKEAIAQAKSQYEHYQGLIEGNSKLGDFLNDPLVNALIPMGDWQQIYNDTQRLPELRQRYGLTSNDQKVQQAFDKLLMKAGTLEDEKRASDQRVVNAKKLREKLNLVQTPQEKQDLALRYQQEMLELQTQQIRLQNIKELAAEKEKLADRKRAQDFTDYMLGKRPDLPKYD
SIO_010081: CCS41_RS14815
subclass of: SO_0000673
so part of: CCS41_RS14815
location: complement(45631..46323)
location: region:45631-46323:-1
so has part: feature:45631-46323:-1:exon

WP_119797940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45631-46323:-1:exon

CCS41_RS14820
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14820
old locus tag: CCS41_14585
so part of: sequence
location: complement(46320..48716)
location: region:46320-48716:-1
so has part: feature:46320-48716:-1:exon
subclass of: SO_0000010

position:46320:-1
position: 46320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48716:-1
position: 48716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46320-48716:-1:exon

CCS41_RS14820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14820
old locus tag: CCS41_14585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705831.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB4 family type IV secretion system protein
translation: MAAAMRKSVFPVETKAPLMGYHVGENIVTLPGNRLLSVVRLKGISHETREPESLNRLFSLLNRYFQALGKKEGKNLMLQTYITKNKVRLNTQYALALPALQAFVDAYTAPFREGEFRQVGYSLALILKYQDLEDGIARIEELITVSKTMLEPFDASLLGMEENQHGALFSQIGRFYSLLFNGQEQDILVSDTRLGDAVIDSVTHFGGYDFIENRPNKGGQRFCTTYDLRDYPAISTPGMWDEAVEQQFDFTLVQTFLFEDRNKVKAAFKKHTADLKAVEGESNQTDEIEQAVQQITQGTLAFGKYHAGLIVYGDTPDEAIANGAKMDSLFMTHDTAFIRSTLTNIDTWFTQFPGVTDAVYPMAKSTENLACGFSLHATPTGKATGNPPGDGTALMPLKTVNEGVYFLNPHDSPLGHNNTGEKLAGHIAVTAMTNAGKTTLEACMLIHFSRWNPMIFSLDYNHSLENVLRALGAHYFTVSPGVYTGIQPFQFQDSPSLRQFLFDTVKQCAGETAPDEEREIQDGIEAVMRHSVIENRSLSLMLQGIPKKGGNCLHTRLAKWCRNVDGHQGQYAWILDAPVNLFEPRTLRRLAFDCTLILNKEYAGKHSAAMEVMLNTFFYLKREMHATQPGSLLINVIAEYWVPLSFESTAEAIKEILKAGRTRGEILMMDTQSPEDALSTDYAPAVIQQVITQIWMANTKAKRESYKAFGIEGKEFDKVVELIPSSREFMVKQGHQAVMVKFVLDEKLKYWLPLLSSTDENLAVAARIRRELNTEDPAVWVSAFLAEMQQLHQQEKTS
SIO_010081: CCS41_RS14820
subclass of: SO_0000673
so part of: CCS41_RS14820
location: complement(46320..48716)
location: region:46320-48716:-1
so has part: feature:46320-48716:-1:exon

WP_119797941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46320-48716:-1:exon

CCS41_RS14825
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14825
old locus tag: CCS41_14590
so part of: sequence
location: complement(48673..48972)
location: region:48673-48972:-1
so has part: feature:48673-48972:-1:exon
subclass of: SO_0000010

position:48673:-1
position: 48673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48972:-1
position: 48972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48673-48972:-1:exon

CCS41_RS14825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14825
old locus tag: CCS41_14590
inference: COORDINATES: protein motif:HMM:NF016957.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion protein
translation: MPIFPLLLCFVGTLVFGVSGFSAFGGWGGLLALPFLLVGIALRIVCEKDDKYLRRLHFMLRRLRLNRRFGKSLFVTPQNPKWSQYYGRRYAKVRFSGGD
SIO_010081: CCS41_RS14825
subclass of: SO_0000673
so part of: CCS41_RS14825
location: complement(48673..48972)
location: region:48673-48972:-1
so has part: feature:48673-48972:-1:exon

WP_240313951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48673-48972:-1:exon

CCS41_RS14830
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14830
old locus tag: CCS41_14595
so part of: sequence
location: complement(49040..49384)
location: region:49040-49384:-1
so has part: feature:49040-49384:-1:exon
subclass of: SO_0000010

position:49040:-1
position: 49040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49384:-1
position: 49384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49040-49384:-1:exon

CCS41_RS14830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14830
old locus tag: CCS41_14595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705829.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPNQPFEPSLKKPWVNHVLLAIVLLLTSPWVLADWKSSIQTYSKDVQVALYAVAAICALITLTWVGIKWLISRSNGDMDTTLMDYFKQIGAVALVGGVILIGTAAWQFFGGTGL
SIO_010081: CCS41_RS14830
subclass of: SO_0000673
so part of: CCS41_RS14830
location: complement(49040..49384)
location: region:49040-49384:-1
so has part: feature:49040-49384:-1:exon

WP_119797942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49040-49384:-1:exon

CCS41_RS14835
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14835
old locus tag: CCS41_14600
so part of: sequence
location: complement(49338..50030)
location: region:49338-50030:-1
so has part: feature:49338-50030:-1:exon
subclass of: SO_0000010

position:49338:-1
position: 49338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50030:-1
position: 50030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49338-50030:-1:exon

CCS41_RS14835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14835
old locus tag: CCS41_14600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707622.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MIASATFLTLAMQCAPSIHPDTSHDVARVESSFNPYAIGVVGQKQGIFPHNLNDAMAHVNRLKAKGKNFSVGLMQINQSNFKRYGVTPEQLFTPCTNLSVFEKIITDCYQRGGSLKRTLSCYYSGNFTTGQKAENDFQQTSYVQRIGYTLPQKGYTVPSTKAERIKAPSLDFAPSAPPNVPIYPSWDVLRQYPRYGEESGKNKPNTQPVNEEKENNAESTLRTLAKKTVG
SIO_010081: CCS41_RS14835
subclass of: SO_0000673
so part of: CCS41_RS14835
location: complement(49338..50030)
location: region:49338-50030:-1
so has part: feature:49338-50030:-1:exon

WP_205411523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49338-50030:-1:exon

CCS41_RS14840
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14840
old locus tag: CCS41_14605
so part of: sequence
location: complement(50074..50298)
location: region:50074-50298:-1
so has part: feature:50074-50298:-1:exon
subclass of: SO_0000010

position:50074:-1
position: 50074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50298:-1
position: 50298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50074-50298:-1:exon

CCS41_RS14840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14840
old locus tag: CCS41_14605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFNQISRRGKSVYIGAELRDQLDKIVLDVGHYVGRPVTVSEFIRYLIKKSGDEARDRLKEILGTEEERKRFDDI
SIO_010081: CCS41_RS14840
subclass of: SO_0000673
so part of: CCS41_RS14840
location: complement(50074..50298)
location: region:50074-50298:-1
so has part: feature:50074-50298:-1:exon

WP_119797943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50074-50298:-1:exon

CCS41_RS14845
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14845
old locus tag: CCS41_14610
so part of: sequence
location: complement(50346..50645)
location: region:50346-50645:-1
so has part: feature:50346-50645:-1:exon
subclass of: SO_0000010

position:50346:-1
position: 50346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50645:-1
position: 50645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50346-50645:-1:exon

CCS41_RS14845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14845
old locus tag: CCS41_14610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873760.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNARQRCRLRRQIRYRKKCQRNDEIRQLRLNAIKKREKETRSIENIIDNIFGLKPKLRQRDDRINVWVEFITLMKKADNTAQTASFTNRCLPDVYLYKP
SIO_010081: CCS41_RS14845
subclass of: SO_0000673
so part of: CCS41_RS14845
location: complement(50346..50645)
location: region:50346-50645:-1
so has part: feature:50346-50645:-1:exon

WP_119797944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50346-50645:-1:exon

CCS41_RS16195
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16195
so part of: sequence
location: complement(50977..51234)
location: region:50977-51234:-1
so has part: feature:50977-51234:-1:exon
subclass of: SO_0000010

position:50977:-1
position: 50977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51234:-1
position: 51234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50977-51234:-1:exon

CCS41_RS16195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQVNFEIDASYAIDAKLLLTSLKRKKKLNVKKTGDNINFKVNTLTPIKTRLTRGCAHCVLTTPSTRVTSLRRVNAKPLRGRQGEH
SIO_010081: CCS41_RS16195
subclass of: SO_0000673
so part of: CCS41_RS16195
location: complement(50977..51234)
location: region:50977-51234:-1
so has part: feature:50977-51234:-1:exon

WP_205411524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50977-51234:-1:exon

CCS41_RS14850
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
gene: repA
locus tag: CCS41_RS14850
old locus tag: CCS41_14615
so part of: sequence
location: complement(51434..52291)
location: region:51434-52291:-1
so has part: feature:51434-52291:-1:exon
subclass of: SO_0000010

position:51434:-1
position: 51434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52291:-1
position: 52291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51434-52291:-1:exon

CCS41_RS14850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
gene: repA
locus tag: CCS41_RS14850
old locus tag: CCS41_14615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012738240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MIRTSYISNLYPVFTPPTSDKQRPAFIRYSMQRASEKDVARSELLYIIQPTDPKTGELRPRFRRLNEHRARALRAMVPALLYHFNIASGLVMASVEQLADECGLSTLSEAGNKSITRASRLITDFMEPMGLVVCEKVWDKLMASYIPKLITLTPLFFMLFGVSPEKLESAQNQQMGWINKGLLEKGEPSITLIEARRRAKEQHIKRAFEHRKSRYAINKQHKLARRIAKLDEQTAKQDILHKLVKRYSLLELGSLGSEGLRKQVDIEYYRLRKIASTPPPDIPVH
SIO_010081: CCS41_RS14850
subclass of: SO_0000673
so part of: CCS41_RS14850
location: complement(51434..52291)
location: region:51434-52291:-1
so has part: feature:51434-52291:-1:exon

WP_119797945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51434-52291:-1:exon

CCS41_RS14855
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14855
old locus tag: CCS41_14620
so part of: sequence
location: complement(52809..53102)
location: region:52809-53102:-1
so has part: feature:52809-53102:-1:exon
subclass of: SO_0000010

position:52809:-1
position: 52809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53102:-1
position: 53102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52809-53102:-1:exon

CCS41_RS14855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14855
old locus tag: CCS41_14620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015874496.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MMKAFHINDTTAYHEVFSALSPVEIKVLSLYCSGLHRSKISLLLNLSISTVNSHLNNARKKYELGNYSELRALFHFLINKHLINSCLCHCRKQLKLS
SIO_010081: CCS41_RS14855
subclass of: SO_0000673
so part of: CCS41_RS14855
location: complement(52809..53102)
location: region:52809-53102:-1
so has part: feature:52809-53102:-1:exon

WP_205411525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52809-53102:-1:exon

CCS41_RS14860
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14860
old locus tag: CCS41_14625
so part of: sequence
location: complement(53148..53786)
location: region:53148-53786:-1
so has part: feature:53148-53786:-1:exon
subclass of: SO_0000010

position:53148:-1
position: 53148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53786:-1
position: 53786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53148-53786:-1:exon

CCS41_RS14860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14860
old locus tag: CCS41_14625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873106.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNKSLMLTCLHSTDPCGLTDAASTIYANPPLCELLGKTDSTVPSHAMTVFQAQEKQTRTQQSLLSVLNILPYGLEQIIQPYLFDFFPLFDEDGNCNGVFCYARPFPFFSLLECVDKKSPRLATVQQPNKTFTKKEWEIIFFLLNRLGKKEIAKKLNRSPRTIENKLYIIYKKLGVGYSSQVRNFCQLKGIDNYIPSKFLSTGSHVISVSARS
SIO_010081: CCS41_RS14860
subclass of: SO_0000673
so part of: CCS41_RS14860
location: complement(53148..53786)
location: region:53148-53786:-1
so has part: feature:53148-53786:-1:exon

WP_119797947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53148-53786:-1:exon

CCS41_RS17340
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS17340
so part of: sequence
location: complement(53783..53914)
location: region:53783-53914:-1
so has part: feature:53783-53914:-1:exon
subclass of: SO_0000010

position:53783:-1
position: 53783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53914:-1
position: 53914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53783-53914:-1:exon

CCS41_RS17340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS17340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKSTFRVLICEAQPIILVLFARISHNLTLRQRTHLLKLGGAA
SIO_010081: CCS41_RS17340
subclass of: SO_0000673
so part of: CCS41_RS17340
location: complement(53783..53914)
location: region:53783-53914:-1
so has part: feature:53783-53914:-1:exon

WP_275887702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53783-53914:-1:exon

CCS41_RS14865
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14865
old locus tag: CCS41_14630
so part of: sequence
location: complement(53989..54534)
location: region:53989-54534:-1
so has part: feature:53989-54534:-1:exon
subclass of: SO_0000010

position:53989:-1
position: 53989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54534:-1
position: 54534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53989-54534:-1:exon

CCS41_RS14865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14865
old locus tag: CCS41_14630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873107.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator-like protein
translation: MEKESVDDLRKKLSKTRNLLNLTTDKLNDVIAEQRRTKNFVPGGYYMMSREAEKNLRALQQESPAASLVFSIIREHMQIGTNAVTISNRALCKIIDKSRATITRAVSHLAKHNYVQIIKTGNVNTYVVNEKIAFSGSPFQRKAVFSATIVAHECEQEKGWEEVKKLKVVPVIYSENEISYD
SIO_010081: CCS41_RS14865
subclass of: SO_0000673
so part of: CCS41_RS14865
location: complement(53989..54534)
location: region:53989-54534:-1
so has part: feature:53989-54534:-1:exon

WP_119797980.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53989-54534:-1:exon

CCS41_RS14870
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14870
old locus tag: CCS41_14635
so part of: sequence
location: complement(55318..55524)
location: region:55318-55524:-1
so has part: feature:55318-55524:-1:exon
subclass of: SO_0000010

position:55318:-1
position: 55318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55524:-1
position: 55524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55318-55524:-1:exon

CCS41_RS14870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14870
old locus tag: CCS41_14635
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTTLTPEKRGLCTITPCDLRDKFAGYLNTLPLHQEAGRDHAFCEEALDGLLELLDQVEAGLGSFDER
SIO_010081: CCS41_RS14870
subclass of: SO_0000673
so part of: CCS41_RS14870
location: complement(55318..55524)
location: region:55318-55524:-1
so has part: feature:55318-55524:-1:exon

WP_119797948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55318-55524:-1:exon

CCS41_RS15815
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15815
so part of: sequence
location: 55523..55822
location: region:55523-55822:1
so has part: feature:55523-55822:1:exon
subclass of: SO_0000010

position:55523:1
position: 55523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55822:1
position: 55822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55523-55822:1:exon

CCS41_RS15815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVPPLYPNKLIACFAKKTQSCAHLRGRRVNSLLLLGLLIPEFEPVALFVEKHPVLAPSPAFVYRPPSGYPICADSFCPLYPLLEKGFFSKCRQYKALR
SIO_010081: CCS41_RS15815
subclass of: SO_0000673
so part of: CCS41_RS15815
location: 55523..55822
location: region:55523-55822:1
so has part: feature:55523-55822:1:exon

WP_205411526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55523-55822:1:exon

CCS41_RS15820
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15820
so part of: sequence
location: complement(56042..56197)
location: region:56042-56197:-1
so has part: feature:56042-56197:-1:exon
subclass of: SO_0000010

position:56042:-1
position: 56042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56197:-1
position: 56197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56042-56197:-1:exon

CCS41_RS15820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNRQSRARNRELRYKILDKKRNENKKLFYKLINWLKKKRKPENRYLPNIK
SIO_010081: CCS41_RS15820
subclass of: SO_0000673
so part of: CCS41_RS15820
location: complement(56042..56197)
location: region:56042-56197:-1
so has part: feature:56042-56197:-1:exon

WP_162860129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56042-56197:-1:exon

CCS41_RS14875
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14875
old locus tag: CCS41_14640
so part of: sequence
location: complement(56194..56850)
location: region:56194-56850:-1
so has part: feature:56194-56850:-1:exon
subclass of: SO_0000010

position:56194:-1
position: 56194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56850:-1
position: 56850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56194-56850:-1:exon

CCS41_RS14875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14875
old locus tag: CCS41_14640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705187.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MEHSEDIWGIKDCESRFIYTNRAFRKFLNIPDKFKIEGKSDDQLPTPVAEFAEELKKQDQETISSGQRVTIIKTHFFGREKKLQPYLYEKFPLYDENNECVGTVFYGKKMDFVSPQQYASRITPSGLKVAPPMKLFNKSELRIIFFILQSMSAKEIARKLSRSHRTIENNLCRMYQKSAVSSLKEFRKFCQKTGFDRYIPPEFIPLGIQFIENREASL
SIO_010081: CCS41_RS14875
subclass of: SO_0000673
so part of: CCS41_RS14875
location: complement(56194..56850)
location: region:56194-56850:-1
so has part: feature:56194-56850:-1:exon

WP_240313952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56194-56850:-1:exon

CCS41_RS14880
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14880
old locus tag: CCS41_14645
so part of: sequence
location: 58008..58739
location: region:58008-58739:1
so has part: feature:58008-58739:1:exon
subclass of: SO_0000010

position:58008:1
position: 58008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58739:1
position: 58739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58008-58739:1:exon

CCS41_RS14880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14880
old locus tag: CCS41_14645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704151.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MMDKIKSDKIQNSQNLVVESLNSLPLISITEHSNEPWVIRDCQSRYVYVNQAGLDFLGLPANFNIEGKLDNECPADWAEFAAEYQANDRKAEKTGKRVAIISTNFYGRKKILEPYYLPRFPIYNKLGECIGTLTNASKLNFISLSQYVNQRTPSVLTLTPPTTLFTEKELRVIFFILQPMTAKMVGDRLCRAKKTIENNLRVIYDKAGVSSLKDFREWCGTIGLDLYIPPEFVKPRVQSQRLS
SIO_010081: CCS41_RS14880
subclass of: SO_0000673
so part of: CCS41_RS14880
location: 58008..58739
location: region:58008-58739:1
so has part: feature:58008-58739:1:exon

WP_240313953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58008-58739:1:exon

CCS41_RS16930
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16930
old locus tag: CCS41_14650
so part of: sequence
location: complement(58747..59226)
location: region:58747-59226:-1
so has part: feature:58747-59226:-1:exon
subclass of: SO_0000010

position:58747:-1
position: 58747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59226:-1
position: 59226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58747-59226:-1:exon

CCS41_RS16930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16930
old locus tag: CCS41_14650
inference: COORDINATES: protein motif:HMM:NF013752.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MPSYAIIDSQSVKTVYASEERGFDGGKKIKGRKRHIIVDTLGNLLHVSVHKANINDTKAGVAVFERAAEKYPSIKAFSGDAGYRGTAVEFVEERLKLKLNISTKIKDVFAVLPIRWIVERTFASLNGFRRLAKEVEILTATAENIFRIAMVRLTLAKLR
SIO_010081: CCS41_RS16930
subclass of: SO_0000673
so part of: CCS41_RS16930
location: complement(58747..59226)
location: region:58747-59226:-1
so has part: feature:58747-59226:-1:exon

WP_240313954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58747-59226:-1:exon

CCS41_RS16935
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16935
old locus tag: CCS41_14655
so part of: sequence
location: complement(59204..59506)
location: region:59204-59506:-1
so has part: feature:59204-59506:-1:exon
subclass of: SO_0000010

position:59204:-1
position: 59204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59506:-1
position: 59506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59204-59506:-1:exon

CCS41_RS16935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16935
old locus tag: CCS41_14655
inference: COORDINATES: protein motif:HMM:NF024736.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MYQSDLKDAEWLIIKNYFNPSDKRGRKSKHDKKTIVDAILYVVKSGCQWRMMPKDFPPWKTVYDHFSRWNKAGVWECALDKLNEQYRHSKKKKGAQLCDY
SIO_010081: CCS41_RS16935
subclass of: SO_0000673
so part of: CCS41_RS16935
location: complement(59204..59506)
location: region:59204-59506:-1
so has part: feature:59204-59506:-1:exon

WP_240313955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59204-59506:-1:exon

CCS41_RS14890
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14890
old locus tag: CCS41_14660
so part of: sequence
location: 59894..60172
location: region:59894-60172:1
so has part: feature:59894-60172:1:exon
subclass of: SO_0000010

position:59894:1
position: 59894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60172:1
position: 60172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59894-60172:1:exon

CCS41_RS14890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14890
old locus tag: CCS41_14660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707012.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1778 domain-containing protein
translation: MPQLLVETNDRMSLRIASEEKSLLIRAAAIQHTNLTEFVIRNVVSVARKIIDDNERLELTERDSLHVLELLDNPPTPNDKLMTAAFSLPMLS
SIO_010081: CCS41_RS14890
subclass of: SO_0000673
so part of: CCS41_RS14890
location: 59894..60172
location: region:59894-60172:1
so has part: feature:59894-60172:1:exon

WP_119797951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59894-60172:1:exon

CCS41_RS14895
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14895
old locus tag: CCS41_14665
so part of: sequence
location: 60169..60693
location: region:60169-60693:1
so has part: feature:60169-60693:1:exon
subclass of: SO_0000010

position:60169:1
position: 60169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60693:1
position: 60693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60169-60693:1:exon

CCS41_RS14895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14895
old locus tag: CCS41_14665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MTLPGWHEAPIGKHHDRAAFDCGDDTLNQFLHRHARQSHEKGGAKTYLAVSDSNQKVLGYYSLSPASIAYERAPEVIKRGLARHEVPVFRLGRLAVDISVQGKRLGGQLLLAAGRRCLLVATQAGGVALMIDAKSEQVAHWYASYGAVPLLDAPLSLLLPLKTIHAALTTAGKL
SIO_010081: CCS41_RS14895
subclass of: SO_0000673
so part of: CCS41_RS14895
location: 60169..60693
location: region:60169-60693:1
so has part: feature:60169-60693:1:exon

WP_119797952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60169-60693:1:exon

CCS41_RS14900
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14900
old locus tag: CCS41_14670
so part of: sequence
location: 60694..61305
location: region:60694-61305:1
so has part: feature:60694-61305:1:exon
subclass of: SO_0000010

position:60694:1
position: 60694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61305:1
position: 61305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60694-61305:1:exon

CCS41_RS14900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14900
old locus tag: CCS41_14670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011839971.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDENSKYEATNLSKLPASISVKKRGNTYVIFRNGHEEIGGIVVCGTPLGDTQLQPYVEEPQDRNKTIVALVAQQMSDALLVHIAKKPEYLRRDAFPPNFVPAGTEVLENKVFPCSKCNQIVARLVFSWNTASTEEMEMVGKKFELEASVSDYPVWVLGAPDCDDNDIAKYLTFQIAPTKGAVYWEHPDDMNKRLIALDVNHC
SIO_010081: CCS41_RS14900
subclass of: SO_0000673
so part of: CCS41_RS14900
location: 60694..61305
location: region:60694-61305:1
so has part: feature:60694-61305:1:exon

WP_119797953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60694-61305:1:exon

CCS41_RS16940
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16940
old locus tag: CCS41_14675
pseudo: true
so part of: sequence
location: complement(61318..>61468)
location: region:61318-61468:-1
so has part: feature:61318-61468:-1:exon
subclass of: SO_0000010

position:61318:-1
position: 61318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61468:-1
position: 61468
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61318-61468:-1:exon

CCS41_RS16940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16940
old locus tag: CCS41_14675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010188411.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: CCS41_RS16940
subclass of: SO_0000673
so part of: CCS41_RS16940
location: complement(61318..>61468)
location: region:61318-61468:-1
so has part: feature:61318-61468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61318-61468:-1:exon

CCS41_RS14910
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14910
old locus tag: CCS41_14680
so part of: sequence
location: complement(61512..61913)
location: region:61512-61913:-1
so has part: feature:61512-61913:-1:exon
subclass of: SO_0000010

position:61512:-1
position: 61512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61913:-1
position: 61913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61512-61913:-1:exon

CCS41_RS14910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14910
old locus tag: CCS41_14680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007348006.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MKLAIDTNVVLRYLLADDIKQATIARKVMKEAILVTIPLPVLCEVVWNLSRGYKLANEDIADAIGILIEADNVKVNQGAVDAGIAMLRSGGDFADGVIAYEGFALGGEIFATFDKKAVAILKKLGSIRTQLLS
SIO_010081: CCS41_RS14910
subclass of: SO_0000673
so part of: CCS41_RS14910
location: complement(61512..61913)
location: region:61512-61913:-1
so has part: feature:61512-61913:-1:exon

WP_119797954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61512-61913:-1:exon

CCS41_RS14915
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14915
old locus tag: CCS41_14685
so part of: sequence
location: complement(61910..62167)
location: region:61910-62167:-1
so has part: feature:61910-62167:-1:exon
subclass of: SO_0000010

position:61910:-1
position: 61910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62167:-1
position: 62167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61910-62167:-1:exon

CCS41_RS14915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14915
old locus tag: CCS41_14685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707138.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MTTLTVTAKGQVTFKQTLLRHLGIKPGQKINVNTLPGGRAVIQAVREGRNIEDAFGILRAKNKGNVVLSIDDMNEIARKGWASEK
SIO_010081: CCS41_RS14915
subclass of: SO_0000673
so part of: CCS41_RS14915
location: complement(61910..62167)
location: region:61910-62167:-1
so has part: feature:61910-62167:-1:exon

WP_119797955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61910-62167:-1:exon

CCS41_RS14920
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14920
old locus tag: CCS41_14690
so part of: sequence
location: complement(62326..63285)
location: region:62326-63285:-1
so has part: feature:62326-63285:-1:exon
subclass of: SO_0000010

position:62326:-1
position: 62326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63285:-1
position: 63285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62326-63285:-1:exon

CCS41_RS14920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14920
old locus tag: CCS41_14690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006705839.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS110 family transposase
translation: MDKTSVGIDVAKLKFDVAVWVERKKYKTKAFPNTPSGFSQLLKWLIPYGDCHICLEATGSYSVPLAMFLVDNGIDVSLENPSRIHAFGESELSRNKTDQGDAKMIVRYCALHTPVLWTPPPLSERQLTALVRHLKSLEEMRQMQENRQSVADDVVQSSLLEIISALKQQIQATKEKIKNHIDNDPDLKKNKALLESIPGIGEILSASLLAYVGNVSKFTNSKAVVAYAGLNPKLCESGLFKGRSRLSKRGHTELRKALYMPALAALSCNPIVKAQWQRLVSRHKGGKMGVCAAMRKLLQLAYGVLKSGIPFDTKIALAS
SIO_010081: CCS41_RS14920
subclass of: SO_0000673
so part of: CCS41_RS14920
location: complement(62326..63285)
location: region:62326-63285:-1
so has part: feature:62326-63285:-1:exon

WP_162859989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62326-63285:-1:exon

CCS41_RS14925
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14925
old locus tag: CCS41_14695
pseudo: true
so part of: sequence
location: <63546..63905
location: region:63546-63905:1
so has part: feature:63546-63905:1:exon
subclass of: SO_0000010

position:63546:1
position: 63546
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:63905:1
position: 63905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63546-63905:1:exon

CCS41_RS14925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14925
old locus tag: CCS41_14695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013141593.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISKra4 family transposase
SIO_010081: CCS41_RS14925
subclass of: SO_0000673
so part of: CCS41_RS14925
location: <63546..63905
location: region:63546-63905:1
so has part: feature:63546-63905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63546-63905:1:exon

CCS41_RS14930
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14930
old locus tag: CCS41_14700
so part of: sequence
location: complement(64239..64568)
location: region:64239-64568:-1
so has part: feature:64239-64568:-1:exon
subclass of: SO_0000010

position:64239:-1
position: 64239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64568:-1
position: 64568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64239-64568:-1:exon

CCS41_RS14930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14930
old locus tag: CCS41_14700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015379150.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MLDTTTREPTTVGEILQEEFLTSLGIGQEELADIMGVTRATVNRLCKGRRRLTVEEATLFSQLFETTPEFWLNLQAAHDRWEAREALQKKKHPPIRPIMEMLGRRISHA
SIO_010081: CCS41_RS14930
subclass of: SO_0000673
so part of: CCS41_RS14930
location: complement(64239..64568)
location: region:64239-64568:-1
so has part: feature:64239-64568:-1:exon

WP_119797956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64239-64568:-1:exon

CCS41_RS14935
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14935
old locus tag: CCS41_14705
so part of: sequence
location: complement(64581..64871)
location: region:64581-64871:-1
so has part: feature:64581-64871:-1:exon
subclass of: SO_0000010

position:64581:-1
position: 64581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64871:-1
position: 64871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64581-64871:-1:exon

CCS41_RS14935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14935
old locus tag: CCS41_14705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016930174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIKSFRDKNLKLFYMESKRDRAIPATIERQLAKKLDMLAAAHNEQDLFIPTSNYYKRLSGQFDGLSSMRVNIQWRLMFQWKDGYAENIYLDPHQDT
SIO_010081: CCS41_RS14935
subclass of: SO_0000673
so part of: CCS41_RS14935
location: complement(64581..64871)
location: region:64581-64871:-1
so has part: feature:64581-64871:-1:exon

WP_119797981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64581-64871:-1:exon

CCS41_RS14940
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14940
old locus tag: CCS41_14710
so part of: sequence
location: complement(65141..66472)
location: region:65141-66472:-1
so has part: feature:65141-66472:-1:exon
subclass of: SO_0000010

position:65141:-1
position: 65141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66472:-1
position: 66472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65141-66472:-1:exon

CCS41_RS14940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14940
old locus tag: CCS41_14710
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMAIEHLAPELLKKEANYQKVADQLGITNDSALQSLKMMAIKHLAPELLKKEANCQKVADQLRITDRNLREHLEIMTARNYCTQDISRGLNGKEIADKRGIIYNIQKNRYPAIEALQLLFVKHYGKQDLKKNLPCQNMVDKWWIKTLVAEAALEKKVIKYLGLEYLEKEPNCQEIAAKLGLRTYEAKKTLEIMAVTRFAPKHFKRRANCQEIAAKLGLITDEAKKALEMMAVTRFVPNYLKREPNCQEIAAALGLITDEAKKTLEMKVVTRFASKYFKRRANCQEIAAKLELITDEAKKALEMMAVTRFVPNHLKREPNCQEIAAALGLITDEAKKTLEMKVVMHFGSEYLEKEPNCQEIAKRLGITYHSRDDKWSSDRDDCPALLELERLTVKRYGKKCLMEGLSFKGAVEELGITCKEALEDMKNLTTAIWLGVIEQITRG
SIO_010081: CCS41_RS14940
subclass of: SO_0000673
so part of: CCS41_RS14940
location: complement(65141..66472)
location: region:65141-66472:-1
so has part: feature:65141-66472:-1:exon

WP_162860130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65141-66472:-1:exon

CCS41_RS14945
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14945
old locus tag: CCS41_14715
so part of: sequence
location: complement(66633..67271)
location: region:66633-67271:-1
so has part: feature:66633-67271:-1:exon
subclass of: SO_0000010

position:66633:-1
position: 66633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67271:-1
position: 67271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66633-67271:-1:exon

CCS41_RS14945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14945
old locus tag: CCS41_14715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008581469.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIYGYVRVSTQEQSVESQKNSISRYCIEQKLMVDEWIELEMSSRKSTVMRRIDELLDKLSPDDIVIASELSRLGRSIKETLNTIETIIQIKEVRLILIKQNLDLNPNTKNNVANKVLITIFSMLAELERDFISERTKEGLRVRAAKGIRLGKPKGIIQASMYDKDKEKILHLYHLGVPIHKIIAMHLGYGKYLSLKAFIHKVTATASLAQSI
SIO_010081: CCS41_RS14945
subclass of: SO_0000673
so part of: CCS41_RS14945
location: complement(66633..67271)
location: region:66633-67271:-1
so has part: feature:66633-67271:-1:exon

WP_119797982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66633-67271:-1:exon

CCS41_RS14950
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14950
old locus tag: CCS41_14720
so part of: sequence
location: 67431..68540
location: region:67431-68540:1
so has part: feature:67431-68540:1:exon
subclass of: SO_0000010

position:67431:1
position: 67431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68540:1
position: 68540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67431-68540:1:exon

CCS41_RS14950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14950
old locus tag: CCS41_14720
inference: COORDINATES: protein motif:HMM:NF025079.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4158 domain-containing protein
translation: MAKIEILSPAEQIKFDNPPVFTLEEQTKYFYLPLKLKTWLDTVNNVTNKVGFILLWGYCQAGARFYQPGQFRKHDIEIICQQQNIAPTQVKMTGYNQRSFNYHKKIIRRYLALQQFDKESKVFFLQIIEDKVARHYSPRQILLELIDLLKIKRIEIPRYNRFALVITQAISDFEKNLLKLIEKKITKELQEKFDALFETNGKNYSVVSRLKTISHSRKPKIIKESIQDFKLIQGLYQMALPIIASLNLHIDTIKYYATWLRKASLFQINQLQVNKRDLYLISFLLHQYQLRQDIFGEILLTCVQATQNSATRIQKEQAFQQKDQHKETLQLLFDARISYKSVLKQIEKVAISPLLNDAQKIENIKLLLE
SIO_010081: CCS41_RS14950
subclass of: SO_0000673
so part of: CCS41_RS14950
location: 67431..68540
location: region:67431-68540:1
so has part: feature:67431-68540:1:exon

WP_119797958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67431-68540:1:exon

CCS41_RS14955
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14955
old locus tag: CCS41_14725
so part of: sequence
location: 68565..70490
location: region:68565-70490:1
so has part: feature:68565-70490:1:exon
subclass of: SO_0000010

position:68565:1
position: 68565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70490:1
position: 70490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68565-70490:1:exon

CCS41_RS14955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14955
old locus tag: CCS41_14725
inference: COORDINATES: protein motif:HMM:NF033527.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MAEPRLDELAENSLQEMNEHDYYHVIEALSLKLQNRVADILRHIAFDETENQNSTKILTAIQHYQKKAGKIGKEAPVDFLTEKEQTALYDSAGKFRVSLYKVLFYFHTSEALKAGVVSLKPAYKYLSIENYLHPKLHWQVNKSRLLEEAGLTFFTDIDNVIFTLKNKLNDAYHRTNQRINSDKNLHIKFDKKGRMVLATPKVEKMNTQSLSALFDDQKYVSILKILSDVQKLTHYLDCFRHYSVKDKKILPKKSVYYAAILGMGCNIGLSKIANVSKGITEDGLLNFFNWHVSLENIHAANKCILELLSQLSLLRLHQNNPNELHTSSDGRKVGVAVESLNANSSFKYFGSGVGTSLYTFIDEFNRLFYSTAFSSSEREAAYVADGLMHNLSINSSIHSTDTQGYSEAIFGVLHMLGIYFAPRIKGLKKSTLYSFESRKTYEEKGYKILPHRYIDVDLIKSHWDDILRLMVTIKLKETTASQVFKRLSSYSKQHPLYCAIKEFGKVIKSLFILRYIDDVDLRQAVEKQLNRIELSNKFSKAILFGNNQEIQYSGKEEQEMVVGCQRLIQNAIVLWNALYLSQKLATTEDEETRKKMLIIIRNGSTLSWQHVNLHGEYDFTQEIEAEKSLFDMDKILSFKVV
SIO_010081: CCS41_RS14955
subclass of: SO_0000673
so part of: CCS41_RS14955
location: 68565..70490
location: region:68565-70490:1
so has part: feature:68565-70490:1:exon

WP_119797959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68565-70490:1:exon

CCS41_RS14960
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14960
old locus tag: CCS41_14730
so part of: sequence
location: 70538..70876
location: region:70538-70876:1
so has part: feature:70538-70876:1:exon
subclass of: SO_0000010

position:70538:1
position: 70538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70876:1
position: 70876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70538-70876:1:exon

CCS41_RS14960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14960
old locus tag: CCS41_14730
inference: COORDINATES: protein motif:HMM:NF025063.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase core domain-containing protein
translation: MAYWRRKLNKGLIHHSDRGSQYTSREYGQHLSVMGMQASNSRKGQCWDNAPTERFFRSLKYEYLHYEVLKGHHDAKLSVLDYLAYYNSKRPHCVLGYLSPMEFERIPLIKVS
SIO_010081: CCS41_RS14960
subclass of: SO_0000673
so part of: CCS41_RS14960
location: 70538..70876
location: region:70538-70876:1
so has part: feature:70538-70876:1:exon

WP_119797960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:70538-70876:1:exon

CCS41_RS14965
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14965
old locus tag: CCS41_14735
pseudo: true
so part of: sequence
location: <70939..71927
location: region:70939-71927:1
so has part: feature:70939-71927:1:exon
subclass of: SO_0000010

position:70939:1
position: 70939
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:71927:1
position: 71927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70939-71927:1:exon

CCS41_RS14965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14965
old locus tag: CCS41_14735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: CCS41_RS14965
subclass of: SO_0000673
so part of: CCS41_RS14965
location: <70939..71927
location: region:70939-71927:1
so has part: feature:70939-71927:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70939-71927:1:exon

CCS41_RS14975
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14975
old locus tag: CCS41_14745
so part of: sequence
location: complement(72334..73071)
location: region:72334-73071:-1
so has part: feature:72334-73071:-1:exon
subclass of: SO_0000010

position:72334:-1
position: 72334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73071:-1
position: 73071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72334-73071:-1:exon

CCS41_RS14975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14975
old locus tag: CCS41_14745
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNDVKKYTYLDTDNNGLITRGAADDRYLNVSDNLNDLVSTATARSHLGLKTGAIKDVDTDDNGLITQGAADKRYLNKNSENLLFTQEDKADVSKHTQFFQLFFGDPDGLAYLLRPGLKSDQLEAWLANDNNGEKFTDVVASQTAMNAVAASQIAMNAVATSSTTREILRNSSTAMAEVGKNSMAIAKLTTGLAGLNPLDYADMAAVAASKTAMDAVAGSAIALNAIVKSELASKAIEVNLQSPG
SIO_010081: CCS41_RS14975
subclass of: SO_0000673
so part of: CCS41_RS14975
location: complement(72334..73071)
location: region:72334-73071:-1
so has part: feature:72334-73071:-1:exon

WP_119797962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72334-73071:-1:exon

CCS41_RS14980
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14980
old locus tag: CCS41_14750
so part of: sequence
location: complement(73107..75095)
location: region:73107-75095:-1
so has part: feature:73107-75095:-1:exon
subclass of: SO_0000010

position:73107:-1
position: 73107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75095:-1
position: 75095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73107-75095:-1:exon

CCS41_RS14980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14980
old locus tag: CCS41_14750
inference: COORDINATES: protein motif:HMM:NF023985.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail protein
translation: MNSHDVMLSWTAEGDKRLQEARASGSKLQLTHMALGNASTPLSITDLKQAREVRSVIYQAPLDGVTVDREKNSVIGELILPEDKKEEAIREIGIFELDTLVAVGYSSSPYRDVRQQSGERIQLVRLPLNTIPASAIETLSNVINFKESDTRYLHAAENLKDLTNKKTARSNFELGTAAVKNAGTNHSDLITTGEADNRYLKHSENLLATKADKADVSKHSQFFHLFVDDPDVLAYLLQPGLTSDQLEAWLASDNNEEKFTRLFTHSVAIQIIISNSAAFTMLVNSPRAIKAAVKSQAMLVAMVSAEPALAVVVNSQTVMNAVANSRAALDVIGMSTLACQAIEEGQYQVPMIADLGKKIDRKNMAIAVVGNKAIFLGGKTTSPSATIDIYDSQDNYSATIDIYDSQDNSWTTHTASEARYLAEVAVVGNKAIFFGGKTASPSATIDIYDSQDNNSATIDIYDSQDNSWTTHTASEARYLATVAVVGNKAIFFGGETTNIYDSQGNSWTTHKASEARYLATVAVVGNKAIFFGGKTGNDNYSATIDIYDSQGNSWTTHTASEARYLAGVAVVGNKAIFFGGYTTSFTATIDIYDSQDNSWTTHTASEAHYLVTVAVVGNKAIFLGERLVMITTIPRQSISIMRQVELGERSLLSGLIVTIYVK
SIO_010081: CCS41_RS14980
subclass of: SO_0000673
so part of: CCS41_RS14980
location: complement(73107..75095)
location: region:73107-75095:-1
so has part: feature:73107-75095:-1:exon

WP_119797963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73107-75095:-1:exon

CCS41_RS14985
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS14985
old locus tag: CCS41_14755
so part of: sequence
location: 75427..75585
location: region:75427-75585:1
so has part: feature:75427-75585:1:exon
subclass of: SO_0000010

position:75427:1
position: 75427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75585:1
position: 75585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75427-75585:1:exon

CCS41_RS14985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS14985
old locus tag: CCS41_14755
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MLAIPLPVEIEDRLDQLAEMTGKTTTLLAKQAINEYLERELWQITETEHALN
SIO_010081: CCS41_RS14985
subclass of: SO_0000673
so part of: CCS41_RS14985
location: 75427..75585
location: region:75427-75585:1
so has part: feature:75427-75585:1:exon

WP_240313957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75427-75585:1:exon

CCS41_RS16945
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16945
pseudo: true
so part of: sequence
location: <75786..75935
location: region:75786-75935:1
so has part: feature:75786-75935:1:exon
subclass of: SO_0000010

position:75786:1
position: 75786
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:75935:1
position: 75935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75786-75935:1:exon

CCS41_RS16945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16945
inference: COORDINATES: protein motif:HMM:NF016876.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
SIO_010081: CCS41_RS16945
subclass of: SO_0000673
so part of: CCS41_RS16945
location: <75786..75935
location: region:75786-75935:1
so has part: feature:75786-75935:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75786-75935:1:exon

CCS41_RS15825
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15825
so part of: sequence
location: complement(76606..76968)
location: region:76606-76968:-1
so has part: feature:76606-76968:-1:exon
subclass of: SO_0000010

position:76606:-1
position: 76606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76968:-1
position: 76968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76606-76968:-1:exon

CCS41_RS15825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15825
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAMSKKPRKRKPSRQSSAPLPPRYLVSIPHSYGHIDDDVDETWFADIDRVIHHCLTFGPQFFLDMGEYPPTTIIIDAVRRDGSGVNLSKMPLDIFMEAVKSGQQTVHYGPWSPDYDAWHD
SIO_010081: CCS41_RS15825
subclass of: SO_0000673
so part of: CCS41_RS15825
location: complement(76606..76968)
location: region:76606-76968:-1
so has part: feature:76606-76968:-1:exon

WP_205411527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76606-76968:-1:exon

CCS41_RS15015
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15015
old locus tag: CCS41_14785
so part of: sequence
location: 77882..78817
location: region:77882-78817:1
so has part: feature:77882-78817:1:exon
subclass of: SO_0000010

position:77882:1
position: 77882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78817:1
position: 78817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77882-78817:1:exon

CCS41_RS15015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15015
old locus tag: CCS41_14785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704154.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MADGTEKNRVRNLKTLRPRKHQQIDFFIADEVDIVNFRDELASMEHPFFALKGGDTRTREYVNGNTIIKVAPNAEYGMATIFDKDVWIYAISKLCQAMYKDQPISRTVCFTAYDLFVTTNRNKSGRSYKELEKALDRLAGTRITTNIQHSVDKREAIGFGLIDSWHVVEEQKGKQAVGMIEVTLPNWLYEAITRTKLLKISQDYFRIRKAIDRRLYEIARKHCGSQHQFQISLEKLHIKTGSTRDLRKFRMDIKNLSKINDLPDYEIRYEAGKDCVIFTNRDQDSEAAQKSKLREGGKKAIFGLKKKYGFE
SIO_010081: CCS41_RS15015
subclass of: SO_0000673
so part of: CCS41_RS15015
location: 77882..78817
location: region:77882-78817:1
so has part: feature:77882-78817:1:exon

WP_119797968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77882-78817:1:exon

CCS41_RS15020
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15020
old locus tag: CCS41_14790
so part of: sequence
location: complement(79093..79851)
location: region:79093-79851:-1
so has part: feature:79093-79851:-1:exon
subclass of: SO_0000010

position:79093:-1
position: 79093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79851:-1
position: 79851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79093-79851:-1:exon

CCS41_RS15020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15020
old locus tag: CCS41_14790
inference: COORDINATES: protein motif:HMM:NF025079.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4158 domain-containing protein
translation: MTSQHNPKKEGKSERLSVLTDAEQFALYGLPDFDEAQQLEFLSLSKTELELAMSRPTLHAQVCCILQIGYFRAKHTFFRFSLAETEHDYAFVMSRYFDDTECQCMLITDHEYHSQRKLIAGLFEYHLWSGQFRQQLEQQTRQIVRRDITPGFVAAELISWLRDNRIVRPGYSTFQDIIGKTLSVERQRLTDILSRSLEPGTKEALTQLLDRDDTLSELAVLRQDAKDFRWRQMAREREKRAILAPLYHVARV
SIO_010081: CCS41_RS15020
subclass of: SO_0000673
so part of: CCS41_RS15020
location: complement(79093..79851)
location: region:79093-79851:-1
so has part: feature:79093-79851:-1:exon

WP_119797969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79093-79851:-1:exon

CCS41_RS15025
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15025
old locus tag: CCS41_14795
so part of: sequence
location: 80007..80591
location: region:80007-80591:1
so has part: feature:80007-80591:1:exon
subclass of: SO_0000010

position:80007:1
position: 80007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80591:1
position: 80591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80007-80591:1:exon

CCS41_RS15025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15025
old locus tag: CCS41_14795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006706936.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTKTRIGYARCSTDRQDLAAQQAALIQLGVSPERIYIDRGLTGSNRLRPGLEQALAAVRCGDTLVVPKLDRLARSVPDARHIADSLLARGVKLALGTNVYDPTDPMGKMFFNILATFAEFEGDLIRLRTKEGMAIARAKGKLRGKQPKLSDKQQKELCRMHGTGQYSISDLAELFSVSRPTVYRMLAREGRLSI
SIO_010081: CCS41_RS15025
subclass of: SO_0000673
so part of: CCS41_RS15025
location: 80007..80591
location: region:80007-80591:1
so has part: feature:80007-80591:1:exon

WP_119797970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80007-80591:1:exon

CCS41_RS15030
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15030
old locus tag: CCS41_14800
so part of: sequence
location: 80641..80910
location: region:80641-80910:1
so has part: feature:80641-80910:1:exon
subclass of: SO_0000010

position:80641:1
position: 80641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80910:1
position: 80910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80641-80910:1:exon

CCS41_RS15030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15030
old locus tag: CCS41_14800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLVDYYILRTSRELLDISRAKGNLPTAESTPSIGWSAIISWIAGSVVGLTIEQGIPSLNSLLIASIIYWMICVVRKTFLNKKVLEKINQ
SIO_010081: CCS41_RS15030
subclass of: SO_0000673
so part of: CCS41_RS15030
location: 80641..80910
location: region:80641-80910:1
so has part: feature:80641-80910:1:exon

WP_119797971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80641-80910:1:exon

CCS41_RS15035
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15035
old locus tag: CCS41_14805
so part of: sequence
location: complement(80996..81427)
location: region:80996-81427:-1
so has part: feature:80996-81427:-1:exon
subclass of: SO_0000010

position:80996:-1
position: 80996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81427:-1
position: 81427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80996-81427:-1:exon

CCS41_RS15035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15035
old locus tag: CCS41_14805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019428295.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIN domain-containing protein
translation: MANRSFIDTNILVYAEASDIPVKQKTALSLLKQLYEDASGVLSTQILQEYCNVALKKLKLSPQYIRAQLDLYEQFEVIQVTPAIIRAGIDLNQTRSIAFYDAIVLASAKASGCRVLFSEDMNTGETVDSIQICNPFVNNVPKK
SIO_010081: CCS41_RS15035
subclass of: SO_0000673
so part of: CCS41_RS15035
location: complement(80996..81427)
location: region:80996-81427:-1
so has part: feature:80996-81427:-1:exon

WP_240313958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80996-81427:-1:exon

CCS41_RS15040
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15040
old locus tag: CCS41_14810
so part of: sequence
location: complement(81432..81656)
location: region:81432-81656:-1
so has part: feature:81432-81656:-1:exon
subclass of: SO_0000010

position:81432:-1
position: 81432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81656:-1
position: 81656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81432-81656:-1:exon

CCS41_RS15040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15040
old locus tag: CCS41_14810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019428294.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6364 family protein
translation: MNITLSVDKQVAQRARDAAQKMGKSLNQIVRDYLEQLAGSAYRDQQWVQFEARCLQSSAKLDGWQFDRNEANER
SIO_010081: CCS41_RS15040
subclass of: SO_0000673
so part of: CCS41_RS15040
location: complement(81432..81656)
location: region:81432-81656:-1
so has part: feature:81432-81656:-1:exon

WP_006705592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81432-81656:-1:exon

CCS41_RS15045
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15045
old locus tag: CCS41_14815
so part of: sequence
location: complement(82144..82728)
location: region:82144-82728:-1
so has part: feature:82144-82728:-1:exon
subclass of: SO_0000010

position:82144:-1
position: 82144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82728:-1
position: 82728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82144-82728:-1:exon

CCS41_RS15045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15045
old locus tag: CCS41_14815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006706936.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTKTRIGYARCSTDRQDLAAQQAALIQLGVSPERIYIDRGLTGSNRLRPGLEQALAAVRCGDTLVVPKLDRLARSVPDARHIADSLLARGVKLALGTNVYDPTDPMGKMFFNILATFAEFEGDLIRLRTKEGMAIARAKGKLRGKQPKLSDKQQKELCRMHGTGQYSISDLAELFSVSRPTVYRMLAREGRLSI
SIO_010081: CCS41_RS15045
subclass of: SO_0000673
so part of: CCS41_RS15045
location: complement(82144..82728)
location: region:82144-82728:-1
so has part: feature:82144-82728:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82144-82728:-1:exon

CCS41_RS15050
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15050
old locus tag: CCS41_14820
so part of: sequence
location: 82884..83642
location: region:82884-83642:1
so has part: feature:82884-83642:1:exon
subclass of: SO_0000010

position:82884:1
position: 82884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83642:1
position: 83642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82884-83642:1:exon

CCS41_RS15050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15050
old locus tag: CCS41_14820
inference: COORDINATES: protein motif:HMM:NF025079.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4158 domain-containing protein
translation: MTSQHNPKKEGKSERLSVLTDAEQFALYGLPDFDEAQQLEFLSLSKTELELAMSRPTLHAQVCCILQIGYFRAKHTFFRFSLAETEHDYAFVMSRYFDDTECQCMLITDHEYHSQRKLIAGLFEYHLWSGQFRQQLEQQTRQIVRRDITPGFVAAELISWLRDNRIVRPGYSTFQDIIGKTLSVERQRLTDILSRSLEPGTKEALTQLLDRDDTLSELAVLRQDAKDFRWRQMAREREKRAILAPLYHVARV
SIO_010081: CCS41_RS15050
subclass of: SO_0000673
so part of: CCS41_RS15050
location: 82884..83642
location: region:82884-83642:1
so has part: feature:82884-83642:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82884-83642:1:exon

CCS41_RS15055
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15055
old locus tag: CCS41_14825
so part of: sequence
location: complement(83918..84853)
location: region:83918-84853:-1
so has part: feature:83918-84853:-1:exon
subclass of: SO_0000010

position:83918:-1
position: 83918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84853:-1
position: 84853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83918-84853:-1:exon

CCS41_RS15055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15055
old locus tag: CCS41_14825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704154.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MADGTEKNRVRNLKTLRPRKHQQIDFFIADEVDIVNFRDELASMEHPFFALKGGDTRTREYVNGNTIIKVAPNAEYGMATIFDKDVWIYAISKLCQAMYKDQPISRTVCFTAYDLFVTTNRNKSGRSYKELEKALDRLAGTRITTNIQHSVDKREAIGFGLIDSWHVVEEQKGKQAVGMIEVTLPNWLYEAITRTKLLKISQDYFRIRKAIDRRLYEIARKHCGSQHQFQISLEKLHIKTGSTRDLRKFRMDIKNLSKINDLPDYEIRYEAGKDCVIFTNRDQDSEAAQKSKLREGGKKAIFGLKKKYGFE
SIO_010081: CCS41_RS15055
subclass of: SO_0000673
so part of: CCS41_RS15055
location: complement(83918..84853)
location: region:83918-84853:-1
so has part: feature:83918-84853:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83918-84853:-1:exon

CCS41_RS15830
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15830
so part of: sequence
location: 85767..86129
location: region:85767-86129:1
so has part: feature:85767-86129:1:exon
subclass of: SO_0000010

position:85767:1
position: 85767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86129:1
position: 86129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85767-86129:1:exon

CCS41_RS15830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15830
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAMSKKPRKRKPSRQSSAPLPPRYLVSIPHSYGHIDDDVDETWFADIDRVIHHCLTFGPQFFLDMGEYPPTTIIIDAVRRDGSGVNLSKMPLDIFMEAVKSGQQTVHYGPWSPDYDAWHD
SIO_010081: CCS41_RS15830
subclass of: SO_0000673
so part of: CCS41_RS15830
location: 85767..86129
location: region:85767-86129:1
so has part: feature:85767-86129:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85767-86129:1:exon

CCS41_RS16950
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS16950
pseudo: true
so part of: sequence
location: complement(86799..>86948)
location: region:86799-86948:-1
so has part: feature:86799-86948:-1:exon
subclass of: SO_0000010

position:86799:-1
position: 86799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86948:-1
position: 86948
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86799-86948:-1:exon

CCS41_RS16950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS16950
inference: COORDINATES: protein motif:HMM:NF016876.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
SIO_010081: CCS41_RS16950
subclass of: SO_0000673
so part of: CCS41_RS16950
location: complement(86799..>86948)
location: region:86799-86948:-1
so has part: feature:86799-86948:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86799-86948:-1:exon

CCS41_RS15085
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15085
old locus tag: CCS41_14855
so part of: sequence
location: complement(87149..87307)
location: region:87149-87307:-1
so has part: feature:87149-87307:-1:exon
subclass of: SO_0000010

position:87149:-1
position: 87149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87307:-1
position: 87307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87149-87307:-1:exon

CCS41_RS15085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15085
old locus tag: CCS41_14855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MLAIPLPVEIEDRLDQLAEMTGKTTTLLAKQAINEYLERELWQITETEHALN
SIO_010081: CCS41_RS15085
subclass of: SO_0000673
so part of: CCS41_RS15085
location: complement(87149..87307)
location: region:87149-87307:-1
so has part: feature:87149-87307:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:87149-87307:-1:exon

CCS41_RS15090
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15090
old locus tag: CCS41_14860
so part of: sequence
location: 87639..90740
location: region:87639-90740:1
so has part: feature:87639-90740:1:exon
subclass of: SO_0000010

position:87639:1
position: 87639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90740:1
position: 90740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87639-90740:1:exon

CCS41_RS15090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15090
old locus tag: CCS41_14860
inference: COORDINATES: protein motif:HMM:NF023985.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail protein
translation: MNSHDVMLSWTAEGDKRLQEARASGSKLQLTHMALGNASTPLSITDLKQAREVRSVIYQAPLDGVTVDREKNSVIGELILPEDKKEEAIREIGIFELDTLVAVGYSSSPYRDVRQQSGERIQLVRLPLNTIPASAIETLSNVINFKESDTRYLHAAENLKDLTNKKTARSNFELGTAAVKNAGTNHSDLITTGEADNRYLKHSENLLATKADKADVSKHSQFFHLFVDDPDVLAYLLQPGLTSDQLEAWLASDNNEEKFTRLFTHSVAIQIIISNSAAFTMLVNSPRAIKAAVKSQAMLVAMVSAEPALAVVVNSQTVMNAVANSRAALDVIGMSTLACQAIEEGQYQVPMIADLGKKIDRKNMAIAVVGNKAIFLGGKTTSPSATIDIYDSQDNYSATIDIYDSQDNSWTTHTASEARYLAEVAVVGNKAIFFGGKTASPSATIDIYDSQDNNSATIDIYDSQDNSWTTHTASEARYLATVAVVGNKAIFFGGETTNIYDSQGNSWTTHKASEARYLATVAVVGNKAIFFGGKTGNDNYSATIDIYDSQGNSWTTHTASEARYLAGVAVVGNKAIFFGGYTTSFTATIDIYDSQDNSWTTHTASEAHYLVTVAVVGNKAIFLGGKTGNDNYDSATIDIYHAASGTWRAVSIIRLNSDYLCKIIEKNKAVFIGRDVTNDVKKYTYLDTDNNGLITRGAADDRYLNVSDNLNDLVSTATARSHLGLKTGAIKDVDTDDNGLITQGAADKRYLNKNSENLLFTQEDKADVSKHTQFFQLFFGDPDGLAYLLRPGLKSDQLEAWLANDNNGEKFTDVVASQTAMNAVAASQIAMNAVATSSTTREILRNSSTAMAEVGKNSMAIAKLTTGLAGLNPLDYADMAAVAASKTAMDAVAGSAIALNAIVKSELASKAIEVNLQSPRITVQSTLNAASGIFKKTNETIGSGGGSWESGANSATIYIPTSSNDNANGMHDNDYYVYSLLPGNRQLAFIPKHSGAVNVTSGLALRGVRVQGLNVGSSTSETGNVTFDVYTAV
SIO_010081: CCS41_RS15090
subclass of: SO_0000673
so part of: CCS41_RS15090
location: 87639..90740
location: region:87639-90740:1
so has part: feature:87639-90740:1:exon

WP_119797974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:87639-90740:1:exon

CCS41_RS15095
type: Gene
subclass of: SO_0000704
RO_0002162: 1878942
locus tag: CCS41_RS15095
old locus tag: CCS41_14865
pseudo: true
so part of: sequence
location: complement(90809..>91823)
location: region:90809-91823:-1
so has part: feature:90809-91823:-1:exon
subclass of: SO_0000010

position:90809:-1
position: 90809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91823:-1
position: 91823
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90809-91823:-1:exon

CCS41_RS15095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1878942
locus tag: CCS41_RS15095
old locus tag: CCS41_14865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 3
transl table: 11
product: Tn3 family transposase
SIO_010081: CCS41_RS15095
subclass of: SO_0000673
so part of: CCS41_RS15095
location: complement(90809..>91823)
location: region:90809-91823:-1
so has part: feature:90809-91823:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90809-91823:-1:exon