Pediococcus claussenii strain TMW 2.53 plasmid pL253-2, complete sequence.
type: Entry
definition: Pediococcus claussenii strain TMW 2.53 plasmid pL253-2, complete sequence.
sequence version: NZ_CP014935.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NZ_CP014935.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505731
keyword: RefSeq
source: Pediococcus claussenii
organism: Pediococcus claussenii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014935.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Pclaussenii253-1\nLong Assembly Name :: Pediococcus claussenii TMW 2.53 1\nGenome Coverage :: 192\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 04:03:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,947\nCDSs (total) :: 1,874\nGenes (coding) :: 1,847\nCDSs (with protein) :: 1,847\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 7 of 27\nPseudo Genes (incomplete) :: 15 of 27\nPseudo Genes (internal stop) :: 10 of 27\nPseudo Genes (multiple problems) :: 5 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 23149
topology: circular
so has quality: SO_0000988
location: 1..23149
location: region:1-23149:1
RO_0002162: 187452

NZ_CP014935
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505731
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23149:1
position: 23149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23149:1:source
so part of: sequence
organism: Pediococcus claussenii
mol type: genomic DNA
strain: TMW 2.53
isolation source: brewery environment
plasmid: pL253-2
country: Netherlands

187452
type: Taxonomy
SIO_000068: taxonomy

AYR57_RS09450
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09450
old locus tag: AYR57_09445
so part of: sequence
location: join(22768..23149,1..95)
location: region:1-23149:1
so has part: feature:22768-23149:1:exon
so has part: feature:1-95:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:22768-23149:1:exon

position:22768:1
position: 22768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-95:1:exon

position:95:1
position: 95
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AYR57_RS09450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09450
old locus tag: AYR57_09445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011668134.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: universal stress protein
translation: MLQQYKHILVPVDGSYEAELAFKKAVAVAKRNDADLHLVHVVDTRALQIFSSLDTSMAEQVTETAKKTLDKYVADAKADGLDKIDYAIEYGAPRTIIEDVPRGNDTDLIMIGATGLNAVGRLLIGSVTDYVTRTAVCDVIVVRTDLDNQPVKAAHRAE
SIO_010081: AYR57_RS09450
subclass of: SO_0000673
so part of: AYR57_RS09450
location: join(22768..23149,1..95)
location: region:1-23149:1
so has part: feature:22768-23149:1:exon
so has part: feature:1-95:1:exon

WP_065868919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22768-23149:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-95:1:exon

AYR57_RS09455
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09455
old locus tag: AYR57_09450
so part of: sequence
location: complement(151..1074)
location: region:151-1074:-1
so has part: feature:151-1074:-1:exon
subclass of: SO_0000010

position:151:-1
position: 151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1074:-1
position: 1074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151-1074:-1:exon

AYR57_RS09455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09455
old locus tag: AYR57_09450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013355080.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MSTTIVSFQNRVVIETLHNEGRSLRYIANYLDFSQTTIFNELHRLNGEYQAELAQTDFERKVSQRGRKSSLTKNLKHLIEEKIQVQKWSPEQVAHVVGIAYKTVYNWIDQGWLDVQLPDLPDHGIRRHRAKEKRGTFSHGRSIEKRPHKIETRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLHGRDSQSMTQTVLELARQLQDKLKTLTVDHGKEFANYQTIERRTGTQVYFAHAYSPHERGSNENRNRVLRRFIPKGQAIEELSDHQLVQINWYLNSRPLKCLNWHTPIEIFLLNLRH
SIO_010081: AYR57_RS09455
subclass of: SO_0000673
so part of: AYR57_RS09455
location: complement(151..1074)
location: region:151-1074:-1
so has part: feature:151-1074:-1:exon

WP_054712567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:151-1074:-1:exon

AYR57_RS09460
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09460
old locus tag: AYR57_09455
pseudo: true
so part of: sequence
location: 1216..1578
location: region:1216-1578:1
so has part: feature:1216-1578:1:exon
subclass of: SO_0000010

position:1216:1
position: 1216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1578:1
position: 1578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1216-1578:1:exon

AYR57_RS09460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09460
old locus tag: AYR57_09455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002833166.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TIGR02328 family protein
SIO_010081: AYR57_RS09460
subclass of: SO_0000673
so part of: AYR57_RS09460
location: 1216..1578
location: region:1216-1578:1
so has part: feature:1216-1578:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1216-1578:1:exon

AYR57_RS09465
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09465
old locus tag: AYR57_09460
so part of: sequence
location: complement(1661..1825)
location: region:1661-1825:-1
so has part: feature:1661-1825:-1:exon
subclass of: SO_0000010

position:1661:-1
position: 1661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1825:-1
position: 1825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1661-1825:-1:exon

AYR57_RS09465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09465
old locus tag: AYR57_09460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011674067.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MAQKEALMNSMGKIKHAKKRQISHAFSHTYLVGAVIILILSPIALLTDRKQFKS
SIO_010081: AYR57_RS09465
subclass of: SO_0000673
so part of: AYR57_RS09465
location: complement(1661..1825)
location: region:1661-1825:-1
so has part: feature:1661-1825:-1:exon

WP_075168959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1661-1825:-1:exon

AYR57_RS09470
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09470
old locus tag: AYR57_09465
so part of: sequence
location: 1992..2777
location: region:1992-2777:1
so has part: feature:1992-2777:1:exon
subclass of: SO_0000010

position:1992:1
position: 1992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2777:1
position: 2777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1992-2777:1:exon

AYR57_RS09470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09470
old locus tag: AYR57_09465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005717330.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKIITFSAIKGGVGKTTLTFNYGEWLSSKGYNVLMIDSDHQCSLTQTYDIYKDHDTLANVFTKDNEKVEIIELHKNLSIIPASMNLDTINNDLQTRANKELLMYMWFSDNYNELKKFNYVLIDTHPDFSTITQNMIVISDFVFSPIEPSEYGFISKSNLELRMKQLKQDVINVETRQSFVTAELKFIGNRIKHNTKSSHEFVEQMKKDPRTIALIPEREIFNKTTLNHKPLIKMEQENNSTQRAKEFFENIDNIFETFAKQ
SIO_010081: AYR57_RS09470
subclass of: SO_0000673
so part of: AYR57_RS09470
location: 1992..2777
location: region:1992-2777:1
so has part: feature:1992-2777:1:exon

WP_054712564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1992-2777:1:exon

AYR57_RS09475
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09475
old locus tag: AYR57_09470
so part of: sequence
location: 2832..3035
location: region:2832-3035:1
so has part: feature:2832-3035:1:exon
subclass of: SO_0000010

position:2832:1
position: 2832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3035:1
position: 3035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2832-3035:1:exon

AYR57_RS09475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09475
old locus tag: AYR57_09470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005717323.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFEDKMNQLKNSMSSKPAKNEPTAPRISKSYTLKQDIANELTRRAKEKELTASRYLEKLLKKEFNL
SIO_010081: AYR57_RS09475
subclass of: SO_0000673
so part of: AYR57_RS09475
location: 2832..3035
location: region:2832-3035:1
so has part: feature:2832-3035:1:exon

WP_054712561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2832-3035:1:exon

AYR57_RS09485
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09485
old locus tag: AYR57_09480
so part of: sequence
location: 3952..5064
location: region:3952-5064:1
so has part: feature:3952-5064:1:exon
subclass of: SO_0000010

position:3952:1
position: 3952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5064:1
position: 5064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3952-5064:1:exon

AYR57_RS09485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09485
old locus tag: AYR57_09480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823702.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MDQANFDFYKKDNVYGTLFFQFPKVLMYGEKYKHLSSDTKLAYMVLKDRLEYSLRNNWVDENDNVYFVFTNEELKKLFDCSNTKIAKIKKELEGAHLLMQKRMGFQPKAGRQLPNRLYLAELKVNEKDVYLREKNLNSSQSLDTSRLPKNGNQHETVESLDTSRLPKNGNQHETVGNISQSLDTSRLPKNGHDLYKEPRSLDTNRYNIDTQKLDFSTAHFSPAEIQKQNQDLVNHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHQDIGVLIPLDDEELKPLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYAAKHPEEEKSADNDNSGLYY
SIO_010081: AYR57_RS09485
subclass of: SO_0000673
so part of: AYR57_RS09485
location: 3952..5064
location: region:3952-5064:1
so has part: feature:3952-5064:1:exon

WP_086990006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3952-5064:1:exon

AYR57_RS09490
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09490
old locus tag: AYR57_09485
so part of: sequence
location: 5171..5377
location: region:5171-5377:1
so has part: feature:5171-5377:1:exon
subclass of: SO_0000010

position:5171:1
position: 5171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5377:1
position: 5377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5171-5377:1:exon

AYR57_RS09490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09490
old locus tag: AYR57_09485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVRANQANQLKSSAFRIDKDLADDTEAVLSEEERANLRFLKATEGTPVTEFKDAKEVADWLNDPDED
SIO_010081: AYR57_RS09490
subclass of: SO_0000673
so part of: AYR57_RS09490
location: 5171..5377
location: region:5171-5377:1
so has part: feature:5171-5377:1:exon

WP_065868909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5171-5377:1:exon

AYR57_RS09740
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09740
so part of: sequence
location: complement(5501..6276)
location: region:5501-6276:-1
so has part: feature:5501-6276:-1:exon
subclass of: SO_0000010

position:5501:-1
position: 5501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6276:-1
position: 6276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5501-6276:-1:exon

AYR57_RS09740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612162.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5-like element ISLpl3 family transposase
translation: MTTPKRYELEDAQWDRIKGYFPPYRTGRPSSLDNRTALNAILWLMRSGAPWRDLPERYGSWKTVYSRFRAWVSSGLFEQVFLELIDDLDMENLSLDSTIVRAHQKATGGKKNAECMVENQAIGLSRGGRTTKIHALVDGLGNPLGFRLTGGQVHDSQVASELLEGFDISQSNIIADKAYGTAKLRQYIEDKAGVYTIPPKENTKDKWTCDYHVYCERHLIENFFNQLKNFRRIATRYDKLAHVYLATVYIASICILLK
SIO_010081: AYR57_RS09740
subclass of: SO_0000673
so part of: AYR57_RS09740
location: complement(join(5501..5952,5952..6276))
location: region:5501-6276:-1
so has part: feature:5952-6276:-1:exon
so has part: feature:5501-5952:-1:exon

WP_086990003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5952-6276:-1:exon

position:5952:-1
position: 5952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5501-5952:-1:exon

AYR57_RS09930
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09930
old locus tag: AYR57_09500
pseudo: true
so part of: sequence
location: <6289..6726
location: region:6289-6726:1
so has part: feature:6289-6726:1:exon
subclass of: SO_0000010

position:6289:1
position: 6289
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:6726:1
position: 6726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6289-6726:1:exon

AYR57_RS09930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09930
old locus tag: AYR57_09500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: AYR57_RS09930
subclass of: SO_0000673
so part of: AYR57_RS09930
location: <6289..6726
location: region:6289-6726:1
so has part: feature:6289-6726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6289-6726:1:exon

AYR57_RS09510
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09510
old locus tag: AYR57_09505
so part of: sequence
location: complement(6716..6994)
location: region:6716-6994:-1
so has part: feature:6716-6994:-1:exon
subclass of: SO_0000010

position:6716:-1
position: 6716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6994:-1
position: 6994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6716-6994:-1:exon

AYR57_RS09510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09510
old locus tag: AYR57_09505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQANNLSVEQTEELLKTFADYVNAHKPDKLKNDQPNN
SIO_010081: AYR57_RS09510
subclass of: SO_0000673
so part of: AYR57_RS09510
location: complement(6716..6994)
location: region:6716-6994:-1
so has part: feature:6716-6994:-1:exon

WP_003646133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6716-6994:-1:exon

AYR57_RS09515
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09515
old locus tag: AYR57_09510
so part of: sequence
location: complement(7017..7226)
location: region:7017-7226:-1
so has part: feature:7017-7226:-1:exon
subclass of: SO_0000010

position:7017:-1
position: 7017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7226:-1
position: 7226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7017-7226:-1:exon

AYR57_RS09515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09515
old locus tag: AYR57_09510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013729135.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQSNLEKQEAKLKALNQKIKDEKNNIEQRIGKQIISQANLDYANLSNDQIKILAKQFSEFLKVKSVDH
SIO_010081: AYR57_RS09515
subclass of: SO_0000673
so part of: AYR57_RS09515
location: complement(7017..7226)
location: region:7017-7226:-1
so has part: feature:7017-7226:-1:exon

WP_065868911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7017-7226:-1:exon

AYR57_RS09520
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09520
old locus tag: AYR57_09515
pseudo: true
so part of: sequence
location: 7497..>7856
location: region:7497-7856:1
so has part: feature:7497-7856:1:exon
subclass of: SO_0000010

position:7497:1
position: 7497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7856:1
position: 7856
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7497-7856:1:exon

AYR57_RS09520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09520
old locus tag: AYR57_09515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobA/MobL family protein
SIO_010081: AYR57_RS09520
subclass of: SO_0000673
so part of: AYR57_RS09520
location: 7497..>7856
location: region:7497-7856:1
so has part: feature:7497-7856:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7497-7856:1:exon

AYR57_RS09525
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09525
old locus tag: AYR57_09520
so part of: sequence
location: complement(8055..8459)
location: region:8055-8459:-1
so has part: feature:8055-8459:-1:exon
subclass of: SO_0000010

position:8055:-1
position: 8055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8459:-1
position: 8459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8055-8459:-1:exon

AYR57_RS09525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09525
old locus tag: AYR57_09520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016373353.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GtrA family protein
translation: MEKPITTLYSKYDTALRYLIVGGLTTGINVVLFFGLTHLAMPWFWANIIAWVLSVLFAFIANKKVVFNSADMTFRTVVKEGASFFTLRGASLLADTAILFIGLTLMHGSPLIVKLIDQVVVIVLNYGFSKLIFA
SIO_010081: AYR57_RS09525
subclass of: SO_0000673
so part of: AYR57_RS09525
location: complement(8055..8459)
location: region:8055-8459:-1
so has part: feature:8055-8459:-1:exon

WP_011178835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8055-8459:-1:exon

AYR57_RS09530
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09530
old locus tag: AYR57_09525
so part of: sequence
location: complement(8475..10409)
location: region:8475-10409:-1
so has part: feature:8475-10409:-1:exon
subclass of: SO_0000010

position:8475:-1
position: 8475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10409:-1
position: 10409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8475-10409:-1:exon

AYR57_RS09530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09530
old locus tag: AYR57_09525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003593321.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIKPAFLPAILILCLLIGSIGNLTSVLGVPALLVVVLLGAGLYFGAPRLDHLSTRQLRWGLGLGLLAMLIAQVVVLHVMPNTVYHDPYRVLSQADQLAAGHMTWDITYFWRYANNVPLAYLLSLWLRLTQLVGLSTNLSVHLLSILVLDSFIALALHTIWQLSQRASLLVVAFGFFALSPFAYTYYLQVFYSDLPTMLVLLIIIRSLLNWSQKTSRQRWFAGSGLVVAVMLGAMLKPNLVVLLPALLIVGLILARQHLWRQAKLTLPILLIVLGFGLSLPATKVFDVAANYQPRTAFSFPATHWILMGYNQHSNGGYSGKDVGRAIKQPSQADRQRYNLKTIPKRIKTLGVVGVIRLWVVKLGIVLNVQGIQRWYNGGFRAAPSWYSNHAGFYQGLTVIGYVAATLLMWGALMLKLLRWRPDLTDPHQILALLAVTTALGYLAFHTLLWEVEPRYGQAILPLLWVALAAIPRQASQSRPRWANQASLLNGATASLVAFGAAGVLGAQLPQKQVIAAQRSQLSVQYHAKPKTVTPGTVLAEVVDVNAPANYFSVQIHAGSQVQVTLTNLATGQHYRLTMAGSVARLHHQLAAGQYRITVQNLTTRGQQVDVTHTYHYQLAAHPLTVNGQSQPTASLIYTCMQR
SIO_010081: AYR57_RS09530
subclass of: SO_0000673
so part of: AYR57_RS09530
location: complement(8475..10409)
location: region:8475-10409:-1
so has part: feature:8475-10409:-1:exon

WP_065868912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8475-10409:-1:exon

AYR57_RS09535
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09535
old locus tag: AYR57_09530
so part of: sequence
location: complement(10419..11366)
location: region:10419-11366:-1
so has part: feature:10419-11366:-1:exon
subclass of: SO_0000010

position:10419:-1
position: 10419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11366:-1
position: 11366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10419-11366:-1:exon

AYR57_RS09535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09535
old locus tag: AYR57_09530
EC number: 2.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016373351.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MATSKLTIVVPAYNEEEVLTSSVQKLLAVEDQIAAQTVLGQRADILIVDDGSMDHTWDIIEKLHAMNSRVRGLRFSRNFGHQSALIAGMSEAVKTADMIVTIDADLQDDPDKIGDMVNAYADGADIVYGVRNNRETDSWFKRTTAQGYYKTLKLLGVELVPNHADFRLMSKRAVETFLQYPERNIFIRGLIPKLGFKTAEVFYKRTPRMAGESKYPLKKMLAFAWDGITSLTIAPVRLILILGTLSCLLAVGMVVYAIVMKMLGLTVHGWSLLMVSLWFVGGIQMISLGVIGEYIGKLTTEVKHRPRYTVQTILD
SIO_010081: AYR57_RS09535
subclass of: SO_0000673
so part of: AYR57_RS09535
location: complement(10419..11366)
location: region:10419-11366:-1
so has part: feature:10419-11366:-1:exon

WP_065868913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10419-11366:-1:exon

AYR57_RS09995
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09995
old locus tag: AYR57_09535
so part of: sequence
location: complement(11348..11593)
location: region:11348-11593:-1
so has part: feature:11348-11593:-1:exon
subclass of: SO_0000010

position:11348:-1
position: 11348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11593:-1
position: 11593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11348-11593:-1:exon

AYR57_RS09995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09995
old locus tag: AYR57_09535
inference: COORDINATES: protein motif:HMM:NF013718.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatase PAP2 family protein
translation: MLPHIQDQETQLITVLIGIGWIAMVAISRVYLRDHYLSDVLASVCLASGWWLLVTPAEAFIQAKMRQFLPEGMLKSWPHQN
SIO_010081: AYR57_RS09995
subclass of: SO_0000673
so part of: AYR57_RS09995
location: complement(11348..11593)
location: region:11348-11593:-1
so has part: feature:11348-11593:-1:exon

WP_231952031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11348-11593:-1:exon

AYR57_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10000
pseudo: true
so part of: sequence
location: complement(<11579..11761)
location: region:11579-11761:-1
so has part: feature:11579-11761:-1:exon
subclass of: SO_0000010

position:11579:-1
position: 11579
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11761:-1
position: 11761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11579-11761:-1:exon

AYR57_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002820251.1
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: response regulator
SIO_010081: AYR57_RS10000
subclass of: SO_0000673
so part of: AYR57_RS10000
location: complement(<11579..11761)
location: region:11579-11761:-1
so has part: feature:11579-11761:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11579-11761:-1:exon

AYR57_RS09545
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09545
old locus tag: AYR57_09540
so part of: sequence
location: 11833..12750
location: region:11833-12750:1
so has part: feature:11833-12750:1:exon
subclass of: SO_0000010

position:11833:1
position: 11833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12750:1
position: 12750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11833-12750:1:exon

AYR57_RS09545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09545
old locus tag: AYR57_09540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032488692.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MTSLSSQERTVIQTLLELNYSIRAIARFINRSPATVSVEIHQVTPYKADIAHALALKKRHLRGRHHTLTPAIAVFLNEHIGILKWSPETAAHVLGLPFKTIYNWLNAGRLKLSLADLPDKGIRQKRQSDGRRQVFVHGRSIESRPKSVQARQDFGHFEVDTMQSGKKRGEVLVTITERLSRQHIVRQVSGRNSQAVTPVLIHFFQGIENAKSITVDRGREFVKYDEIEQKLGIPVYFAHPYSPEERGSNEILNRYVRRFIPKERKIETVSAKELDQINHWINARPMKTLNWQSPRKVFQQFAVFG
SIO_010081: AYR57_RS09545
subclass of: SO_0000673
so part of: AYR57_RS09545
location: 11833..12750
location: region:11833-12750:1
so has part: feature:11833-12750:1:exon

WP_046870788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11833-12750:1:exon

AYR57_RS09550
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09550
old locus tag: AYR57_09545
so part of: sequence
location: complement(13568..14854)
location: region:13568-14854:-1
so has part: feature:13568-14854:-1:exon
subclass of: SO_0000010

position:13568:-1
position: 13568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14854:-1
position: 14854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13568-14854:-1:exon

AYR57_RS09550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09550
old locus tag: AYR57_09545
inference: COORDINATES: protein motif:HMM:NF024110.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MFDVIRSKRYWLALLLVGAIIGIVSFAFIGIRNSVKVKQIPVALVNEDKGALSNKIESKLRKKFNGKDSKIKWVSPQKDGFNDQKYYGAFIIRSGFSKELQQQNESLKAQIISQKLTTLQKKEKLPDSAKSKLLQAKFKSQLLQAKFVTQKPVHPAQIKISINQGMNAQISQLLSQALPKIANALSSRISAQQQSVLSKNKINLSAKSWDLVSTPISVSTHESNKIEKNTVNGTAPMLLVALAWFSALIPSLILWREHTKRSASKFLNATTITSQLITGLVASILSATVGFLFVNVCFNLTIPNPINFIGLMSISIFVFYLIITCVLDWLGFTFYPLLLVVWLLAISVISYAPETLDPLYRKGIYSWVPMRFSMQTLTNTLYFHNGSSTTMSSLLVLLIIGFVAAILMYSSGYLKHYLFTVRPHRKIK
SIO_010081: AYR57_RS09550
subclass of: SO_0000673
so part of: AYR57_RS09550
location: complement(13568..14854)
location: region:13568-14854:-1
so has part: feature:13568-14854:-1:exon

WP_011178831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13568-14854:-1:exon

AYR57_RS09555
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09555
old locus tag: AYR57_09550
so part of: sequence
location: 15019..15567
location: region:15019-15567:1
so has part: feature:15019-15567:1:exon
subclass of: SO_0000010

position:15019:1
position: 15019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15567:1
position: 15567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15019-15567:1:exon

AYR57_RS09555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09555
old locus tag: AYR57_09550
inference: COORDINATES: protein motif:HMM:NF012655.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR family transcriptional regulator
translation: MTDLRNKRTEMLIENSFIQLVRQQGFNNVSVIDISNKALINRQTFYRHYQDKYHLATKMIQDFVSTYDSVLKKRSNLNKQNQNFLSITSILAPDIKNLLIKQREKILALRSIQLDSKDLSSEIKRVLRNNLVSMLEEKPDKFEMSLLTSLILGSFNYLIDEQELPDTSQIQHAITGILCLLS
SIO_010081: AYR57_RS09555
subclass of: SO_0000673
so part of: AYR57_RS09555
location: 15019..15567
location: region:15019-15567:1
so has part: feature:15019-15567:1:exon

WP_065868914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15019-15567:1:exon

AYR57_RS09935
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09935
pseudo: true
so part of: sequence
location: 15949..>16026
location: region:15949-16026:1
so has part: feature:15949-16026:1:exon
subclass of: SO_0000010

position:15949:1
position: 15949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16026:1
position: 16026
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15949-16026:1:exon

AYR57_RS09935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003680034.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: AYR57_RS09935
subclass of: SO_0000673
so part of: AYR57_RS09935
location: 15949..>16026
location: region:15949-16026:1
so has part: feature:15949-16026:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15949-16026:1:exon

AYR57_RS09750
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09750
so part of: sequence
location: 16080..16867
location: region:16080-16867:1
so has part: feature:16080-16867:1:exon
subclass of: SO_0000010

position:16080:1
position: 16080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16867:1
position: 16867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16080-16867:1:exon

AYR57_RS09750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVLGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVFKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDIASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
SIO_010081: AYR57_RS09750
subclass of: SO_0000673
so part of: AYR57_RS09750
location: join(16080..16338,16338..16867)
location: region:16080-16867:1
so has part: feature:16080-16338:1:exon
so has part: feature:16338-16867:1:exon

WP_100077700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16080-16338:1:exon

position:16338:1
position: 16338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16338-16867:1:exon

AYR57_RS09570
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09570
old locus tag: AYR57_09565
so part of: sequence
location: complement(16854..17066)
location: region:16854-17066:-1
so has part: feature:16854-17066:-1:exon
subclass of: SO_0000010

position:16854:-1
position: 16854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17066:-1
position: 17066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16854-17066:-1:exon

AYR57_RS09570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09570
old locus tag: AYR57_09565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFVRYMQRVLRNERINFYRKHLRDVKETPLEDWLLEEIVEPSHLSDFLLIENEVANLESFIENEKLSKIS
SIO_010081: AYR57_RS09570
subclass of: SO_0000673
so part of: AYR57_RS09570
location: complement(16854..17066)
location: region:16854-17066:-1
so has part: feature:16854-17066:-1:exon

WP_231952030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16854-17066:-1:exon

AYR57_RS09575
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09575
old locus tag: AYR57_09575
pseudo: true
so part of: sequence
location: complement(17271..18681)
location: region:17271-18681:-1
so has part: feature:17271-18681:-1:exon
subclass of: SO_0000010

position:17271:-1
position: 17271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18681:-1
position: 18681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17271-18681:-1:exon

AYR57_RS09575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09575
old locus tag: AYR57_09575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003594411.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: HAD-IC family P-type ATPase
SIO_010081: AYR57_RS09575
subclass of: SO_0000673
so part of: AYR57_RS09575
location: complement(17271..18681)
location: region:17271-18681:-1
so has part: feature:17271-18681:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17271-18681:-1:exon

AYR57_RS09580
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
gene: eno
locus tag: AYR57_RS09580
old locus tag: AYR57_09580
so part of: sequence
location: complement(18756..20042)
location: region:18756-20042:-1
so has part: feature:18756-20042:-1:exon
subclass of: SO_0000010

position:18756:-1
position: 18756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20042:-1
position: 20042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18756-20042:-1:exon

AYR57_RS09580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
gene: eno
locus tag: AYR57_RS09580
old locus tag: AYR57_09580
EC number: 4.2.1.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008841923.1
GO function: GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO process: GO:0006096 - glycolytic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphopyruvate hydratase
translation: MSVVIESVKAREIFDSRGNPTVEADVNLSDGTLGRAEVPSGASTGEKEAVELRDGGDRLQGKGVSKAVANVNTEINKALHGTDPFNQAHIDQLMIDLDGTPNKARLGANAILGVSMATARAAANALHTPLYRYLGGTDLELPQTFHNVINGGEHADNGIDIQEFMITPVDRSSFRDGFEKIANTYHTLKKVIEEAGYTTGLGDEGGFAPDLKNSEDALQMLHDAIIKAGYTPGKEIAIAFDAAASYFYNRDTKNYDFEGKTYTPAELGEYYIHLLDKFPEIISIEDPYGEEDWGHFADFTKKYGDRVQLVADDPVCTNPALIKDAIKRGMANSILIKLNQIGTVTETLEAIRLARKNGYTTMMSHRSGETGDTFVADFTVATNTAQLKSGAPARSERVEKYNQLLRIEEELGADGTRLAHFPDSVDFD
SIO_010081: AYR57_RS09580
subclass of: SO_0000673
so part of: AYR57_RS09580
location: complement(18756..20042)
location: region:18756-20042:-1
so has part: feature:18756-20042:-1:exon

WP_065868916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18756-20042:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 187452
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01734
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: fluoride
so part of: sequence
location: complement(20099..20167)
location: region:20099-20167:-1
so has part: feature:20099-20167:-1:region

position:20099:-1
position: 20099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20167:-1
position: 20167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20099-20167:-1:region

AYR57_RS09585
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09585
old locus tag: AYR57_09585
so part of: sequence
location: 20353..20751
location: region:20353-20751:1
so has part: feature:20353-20751:1:exon
subclass of: SO_0000010

position:20353:1
position: 20353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20751:1
position: 20751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20353-20751:1:exon

AYR57_RS09585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09585
old locus tag: AYR57_09585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013726950.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CrcB family protein
translation: MQRLRYQDILAMFIGGCFGGIACWEIGLWLNDADTMLGTTAVNLIGRFLLEFVTYGLAVYIDLPGWLILALGTGFVGAFTTFSTMVPNLYKNVGESPVYEIRIFLLELLVGLGAAFSGYLCAEAWGRRRQTW
SIO_010081: AYR57_RS09585
subclass of: SO_0000673
so part of: AYR57_RS09585
location: 20353..20751
location: region:20353-20751:1
so has part: feature:20353-20751:1:exon

WP_054712831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20353-20751:1:exon

AYR57_RS09590
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09590
old locus tag: AYR57_09590
so part of: sequence
location: 20745..20975
location: region:20745-20975:1
so has part: feature:20745-20975:1:exon
subclass of: SO_0000010

position:20745:1
position: 20745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20975:1
position: 20975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20745-20975:1:exon

AYR57_RS09590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09590
old locus tag: AYR57_09590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: CrcB family protein
translation: MVMLVTLGAGVGAVMQYVLTQLGKNWWTWVSVATLVINASGAFLAGFLAMCALQQAWSLLLLTGVWWVHDFFHIHD
SIO_010081: AYR57_RS09590
subclass of: SO_0000673
so part of: AYR57_RS09590
location: 20745..20975
location: region:20745-20975:1
so has part: feature:20745-20975:1:exon

WP_065868917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20745-20975:1:exon

AYR57_RS10005
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10005
old locus tag: AYR57_09600
so part of: sequence
location: complement(21504..21758)
location: region:21504-21758:-1
so has part: feature:21504-21758:-1:exon
subclass of: SO_0000010

position:21504:-1
position: 21504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21758:-1
position: 21758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21504-21758:-1:exon

AYR57_RS10005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10005
old locus tag: AYR57_09600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYYQPSWTYTHDGLSAIRSQKRWILI
SIO_010081: AYR57_RS10005
subclass of: SO_0000673
so part of: AYR57_RS10005
location: complement(21504..21758)
location: region:21504-21758:-1
so has part: feature:21504-21758:-1:exon

WP_065870088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21504-21758:-1:exon

AYR57_RS10105
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10105
old locus tag: AYR57_09605
so part of: sequence
location: complement(21950..22213)
location: region:21950-22213:-1
so has part: feature:21950-22213:-1:exon
subclass of: SO_0000010

position:21950:-1
position: 21950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22213:-1
position: 22213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21950-22213:-1:exon

AYR57_RS10105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10105
old locus tag: AYR57_09605
inference: COORDINATES: protein motif:HMM:NF013677.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKTWASLRRSNQYF
SIO_010081: AYR57_RS10105
subclass of: SO_0000673
so part of: AYR57_RS10105
location: complement(21950..22213)
location: region:21950-22213:-1
so has part: feature:21950-22213:-1:exon

WP_065868918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21950-22213:-1:exon

AYR57_RS09610
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09610
old locus tag: AYR57_09610
so part of: sequence
location: 22384..22671
location: region:22384-22671:1
so has part: feature:22384-22671:1:exon
subclass of: SO_0000010

position:22384:1
position: 22384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22671:1
position: 22671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22384-22671:1:exon

AYR57_RS09610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09610
old locus tag: AYR57_09610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011668133.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAITILMACYTLLALGIGWYFYAHRRRAFLVFHPESSHELSRVLTISGVVMLLIGVLSAVATIMNNMVFISTMLLVGVIAIISIQLILLHWFPKA
SIO_010081: AYR57_RS09610
subclass of: SO_0000673
so part of: AYR57_RS09610
location: 22384..22671
location: region:22384-22671:1
so has part: feature:22384-22671:1:exon

WP_011668133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22384-22671:1:exon