Pediococcus claussenii strain TMW 2.53 plasmid pL253-1, complete sequence.
type: Entry
definition: Pediococcus claussenii strain TMW 2.53 plasmid pL253-1, complete sequence.
sequence version: NZ_CP014934.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NZ_CP014934.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505731
keyword: RefSeq
source: Pediococcus claussenii
organism: Pediococcus claussenii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014934.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Pclaussenii253-1\nLong Assembly Name :: Pediococcus claussenii TMW 2.53 1\nGenome Coverage :: 192\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 04:03:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,947\nCDSs (total) :: 1,874\nGenes (coding) :: 1,847\nCDSs (with protein) :: 1,847\nGenes (RNA) :: 73\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 7 of 27\nPseudo Genes (incomplete) :: 15 of 27\nPseudo Genes (internal stop) :: 10 of 27\nPseudo Genes (multiple problems) :: 5 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 37848
topology: circular
so has quality: SO_0000988
location: 1..37848
location: region:1-37848:1
RO_0002162: 187452

NZ_CP014934
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505731
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37848:1
position: 37848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-37848:1:source
so part of: sequence
organism: Pediococcus claussenii
mol type: genomic DNA
strain: TMW 2.53
isolation source: brewery environment
plasmid: pL253-1
country: Netherlands

187452
type: Taxonomy
SIO_000068: taxonomy

AYR57_RS09230
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09230
old locus tag: AYR57_09225
so part of: sequence
location: complement(join(37279..37848,1..669))
location: region:1-37848:-1
so has part: feature:1-669:-1:exon
so has part: feature:37279-37848:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37848:-1
position: 37848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-669:-1:exon

position:669:-1
position: 669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37279-37848:-1:exon

position:37279:-1
position: 37279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AYR57_RS09230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09230
old locus tag: AYR57_09225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3-like element IS1165 family transposase
translation: MSQLDNTLKLLGITDTNIQVFGTREEFNGRGSGRKKYLVIQAELTYTLRRCPSCGYNTLHPNGHKLTHVHISGPMDRPVILELNKQRWRCSNCHSTCTATTPVVSTNHAIGHGLATHVLKLASKSLPDKTIASLTGISTNSVQRILTANIHPHASRRLPINLCFDEFRSTHGSMSFICIDADTHKSVKVLSDRLNRTIKQFFLSQYSTAERAAVQRVIMDMNASYQAFVHELFPNAELIIDRFHIIQLMGRTMDTIRTQCLKQLDKHSREYKVLKSLWRLFHKANPDAQKSRYLFGLNEYSTEQNAIDIGTDTFPAFKTAYETYIDLHDALMGRHADELKNIITNYQPNGTPLDTAMHTLRKNLNGVINAAKSSYSNGPIEGINRKIKELKRACYGFSNQANMFTRVYQLIA
SIO_010081: AYR57_RS09230
subclass of: SO_0000673
so part of: AYR57_RS09230
location: complement(join(37279..37848,1..669))
location: region:1-37848:-1
so has part: feature:1-669:-1:exon
so has part: feature:37279-37848:-1:exon

WP_065868895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-669:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37279-37848:-1:exon

AYR57_RS09235
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09235
old locus tag: AYR57_09230
so part of: sequence
location: complement(678..1556)
location: region:678-1556:-1
so has part: feature:678-1556:-1:exon
subclass of: SO_0000010

position:678:-1
position: 678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1556:-1
position: 1556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:678-1556:-1:exon

AYR57_RS09235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09235
old locus tag: AYR57_09230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003561820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS982-like element ISLpl4 family transposase
translation: MLNHPKFKQIRHELQGNYHYFYQLCQSLYQRYCPRCVTQRRNVAHVKIDDCRLLALLCLQTTLGIQSQRRFWRLMTAFMPQKITISRSRFNRRALQLLPVVNAIRTGLTREAAQPGQIAIIDSLPNPLCEPVRKFRARIFAGQANIGYNATKQMSFYGFKTHMLVTTDGYILNYVVTAASVHDTKVAVSLIDDCPCPIVLADVGYVGKRLGAEFKQLGYTLWTPYRSNMKGAKEHNKRALKALRRTIESRFSTLVSDFGIETNLTRSAFGFQLKIELAILVYNLGFFNFVTN
SIO_010081: AYR57_RS09235
subclass of: SO_0000673
so part of: AYR57_RS09235
location: complement(678..1556)
location: region:678-1556:-1
so has part: feature:678-1556:-1:exon

WP_003561820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:678-1556:-1:exon

AYR57_RS09240
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09240
old locus tag: AYR57_09235
so part of: sequence
location: 1681..2475
location: region:1681-2475:1
so has part: feature:1681-2475:1:exon
subclass of: SO_0000010

position:1681:1
position: 1681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2475:1
position: 2475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1681-2475:1:exon

AYR57_RS09240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09240
old locus tag: AYR57_09235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918105.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MQITKTPLNQVNPQSQAELISYVDPSLTDALNPALIFVPGGSYTHIDFKQSEKVALRFLSLGFQVSILRYSFVDEVQPLFPAPLLETAQAIATTKQNAAQWHVDRQKVMLMGFSVGGHVVANYNNLWSSDWLQAQTHLSAEDLKPATTILGYPVITPFDGFPDQPTLAQWTNNPDEIAADQHVTADNAPTFIWATTDDQLVSSKNAVDYFLALQAHQVPTELHLYHHGPHGMALADETTAYDERHQDSRIADWIANALAFLREL
SIO_010081: AYR57_RS09240
subclass of: SO_0000673
so part of: AYR57_RS09240
location: 1681..2475
location: region:1681-2475:1
so has part: feature:1681-2475:1:exon

WP_056992669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1681-2475:1:exon

AYR57_RS09245
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09245
old locus tag: AYR57_09240
so part of: sequence
location: 2649..3527
location: region:2649-3527:1
so has part: feature:2649-3527:1:exon
subclass of: SO_0000010

position:2649:1
position: 2649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3527:1
position: 3527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2649-3527:1:exon

AYR57_RS09245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09245
old locus tag: AYR57_09240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003561820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS982-like element ISLpl4 family transposase
translation: MLNHPKFKQIRHELQGNYHYFYQLCQSLYQRYCPRCVTQRRNVAHVKIDDCRLLALLCLQTTLGIQSQRRFWRLMTAFMPQKITISRSRFNRRALQLLPVVNAIRTGLTREAAQPGQIAIIDSLPNPLCEPVRKFRARIFAGQANIGYNATKQMSFYGFKTHMLVTTDGYILNYVVTAASVHDTKVAVSLIDDCPCPIVLADVGYVGKRLGAEFKQLGYTLWTPYRSNMKGAKEHNKRALKALRRTIESRFSTLVSDFGIETNLTRSAFGFQLKIELAILVYNLGFFNFVTN
SIO_010081: AYR57_RS09245
subclass of: SO_0000673
so part of: AYR57_RS09245
location: 2649..3527
location: region:2649-3527:1
so has part: feature:2649-3527:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2649-3527:1:exon

AYR57_RS09250
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09250
old locus tag: AYR57_09245
so part of: sequence
location: complement(3835..4050)
location: region:3835-4050:-1
so has part: feature:3835-4050:-1:exon
subclass of: SO_0000010

position:3835:-1
position: 3835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4050:-1
position: 4050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3835-4050:-1:exon

AYR57_RS09250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09250
old locus tag: AYR57_09245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003649837.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEDFLNKVSKKASEQLKNLKSPYQFETERTKTVQLRMSTYKEVKRIAFENDEKIVDVLEKIIREGLAKRK
SIO_010081: AYR57_RS09250
subclass of: SO_0000673
so part of: AYR57_RS09250
location: complement(3835..4050)
location: region:3835-4050:-1
so has part: feature:3835-4050:-1:exon

WP_003649837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3835-4050:-1:exon

AYR57_RS09255
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09255
old locus tag: AYR57_09250
so part of: sequence
location: complement(4057..4842)
location: region:4057-4842:-1
so has part: feature:4057-4842:-1:exon
subclass of: SO_0000010

position:4057:-1
position: 4057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4842:-1
position: 4842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4057-4842:-1:exon

AYR57_RS09255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09255
old locus tag: AYR57_09250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003649838.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNGKTLLNFNFKGGVGKTTLTVMETYLLGQEGKKVLLIDFDPQGNATEIMKETYKADLKPELSLYEGLLGGNLSKSIVSVTNQIDMIPTDWTLSLWIGAVEKVSRVKRNILLPQMLSKLKQNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQSYTSSLKTATHLGELREQYNGSFQLVGAILYLMKPRAKVDTEISAQAKDFFGEGVFSNSIRTQERVKTFANEGIRNKDHWDKRAIQMYQMVLNEQILRIQQLEE
SIO_010081: AYR57_RS09255
subclass of: SO_0000673
so part of: AYR57_RS09255
location: complement(4057..4842)
location: region:4057-4842:-1
so has part: feature:4057-4842:-1:exon

WP_017866972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4057-4842:-1:exon

AYR57_RS09260
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09260
old locus tag: AYR57_09255
so part of: sequence
location: 5419..6531
location: region:5419-6531:1
so has part: feature:5419-6531:1:exon
subclass of: SO_0000010

position:5419:1
position: 5419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6531:1
position: 6531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5419-6531:1:exon

AYR57_RS09260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09260
old locus tag: AYR57_09255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007124949.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MMDQTNFKFYQADNVYGALFFQFPKVLMYGEQYRYLSSEAKLAYMVLKDRLEYSLRNHWVDEEGHVYFIFTNQELMDLFNCSKGKLATVKKELEKAGLLYQKAMHFNPKTGKNEPNRLYLAELDMRSTDVYLRGEYGQKEPQTLATSESLKNRPSRETVETLATSESLKNRPSRKSVDDTPQTLATSESLKNRHDLDKELKERDTNRYNIDTQKLDFSTANFSPAEIQKQNQDLVNHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHKDIGVIILLGDEELRPLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYAAKHPEEFKEQEAHSDWL
SIO_010081: AYR57_RS09260
subclass of: SO_0000673
so part of: AYR57_RS09260
location: 5419..6531
location: region:5419-6531:1
so has part: feature:5419-6531:1:exon

WP_197498823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5419-6531:1:exon

AYR57_RS09265
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09265
old locus tag: AYR57_09260
so part of: sequence
location: complement(6884..8053)
location: region:6884-8053:-1
so has part: feature:6884-8053:-1:exon
subclass of: SO_0000010

position:6884:-1
position: 6884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8053:-1
position: 8053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6884-8053:-1:exon

AYR57_RS09265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09265
old locus tag: AYR57_09260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003553350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MATTHIKRSTSASRLVNYAEKRAVKKDGLNLDIQYAKSEFKQVRAVYGNSGKTQAYASRIAFSPLEFNPQDPHDQTTVLAVAKEVYAKAYPNQQVALYEHADTDSLHVHAVIGAINLETGQKMHGNWHQYRDHLVHITDQVCQEHGLMVTQPDPNRHEKRSMAEIKLRAKQQPTWKDQIRQAVDHTMQNPLVRDFQAFQDDLKQQAVKVWERGKNLTYQLLGTNYKSRGTKLGIDYEKETIFNELASRQTQSRINQQPKRAINATTDPTQSDPDRTPELPGHSDSTTINSQNVPRSTASSDRTDRPTSQPRVSDDLKQLRQQQRQLAGPIKTDLTKRLRSVPKADQPDQSAKPDRPQTDSNRARPKQPAPQPTQRPSEPDHSRDDGPSR
SIO_010081: AYR57_RS09265
subclass of: SO_0000673
so part of: AYR57_RS09265
location: complement(6884..8053)
location: region:6884-8053:-1
so has part: feature:6884-8053:-1:exon

WP_065868897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6884-8053:-1:exon

AYR57_RS10065
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
gene: mobC
locus tag: AYR57_RS10065
old locus tag: AYR57_09265
so part of: sequence
location: complement(8035..8388)
location: region:8035-8388:-1
so has part: feature:8035-8388:-1:exon
subclass of: SO_0000010

position:8035:-1
position: 8035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8388:-1
position: 8388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8035-8388:-1:exon

AYR57_RS10065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
gene: mobC
locus tag: AYR57_RS10065
old locus tag: AYR57_09265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002369988.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MNELQNLASTKKTTQVHRQASKQINFRVSEPDYLKLARSAQTLNLSVPAFVKKKAQGARLVTPKIAAQDAQNITHQLAKIGGNLNQLAHHANQGGQVDPQALRDLQNEVQRVWQQLT
SIO_010081: AYR57_RS10065
subclass of: SO_0000673
so part of: AYR57_RS10065
location: complement(8035..8388)
location: region:8035-8388:-1
so has part: feature:8035-8388:-1:exon

WP_048001080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8035-8388:-1:exon

AYR57_RS09275
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09275
old locus tag: AYR57_09270
so part of: sequence
location: complement(8856..9080)
location: region:8856-9080:-1
so has part: feature:8856-9080:-1:exon
subclass of: SO_0000010

position:8856:-1
position: 8856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9080:-1
position: 9080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8856-9080:-1:exon

AYR57_RS09275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09275
old locus tag: AYR57_09270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001748276.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKWQGCYLKEKSASALALYHTREEAGLTQADLAERANVPQSTIARIERGDNVTFDKLAEIAHAMGKTIKIEFTQ
SIO_010081: AYR57_RS09275
subclass of: SO_0000673
so part of: AYR57_RS09275
location: complement(8856..9080)
location: region:8856-9080:-1
so has part: feature:8856-9080:-1:exon

WP_024855736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8856-9080:-1:exon

AYR57_RS09720
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09720
so part of: sequence
location: complement(9193..9980)
location: region:9193-9980:-1
so has part: feature:9193-9980:-1:exon
subclass of: SO_0000010

position:9193:-1
position: 9193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9980:-1
position: 9980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9193-9980:-1:exon

AYR57_RS09720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MKNYLSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTSCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTANSLLEQVFKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
SIO_010081: AYR57_RS09720
subclass of: SO_0000673
so part of: AYR57_RS09720
location: complement(join(9193..9722,9722..9980))
location: region:9193-9980:-1
so has part: feature:9722-9980:-1:exon
so has part: feature:9193-9722:-1:exon

WP_100223170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9722-9980:-1:exon

position:9722:-1
position: 9722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9193-9722:-1:exon

AYR57_RS09290
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09290
old locus tag: AYR57_09285
so part of: sequence
location: complement(10055..11326)
location: region:10055-11326:-1
so has part: feature:10055-11326:-1:exon
subclass of: SO_0000010

position:10055:-1
position: 10055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11326:-1
position: 11326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10055-11326:-1:exon

AYR57_RS09290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09290
old locus tag: AYR57_09285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003581702.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-binding oxidoreductase
translation: MKKMTVWQILTWGVILFVIPLPLVQAMAVELPSLYTSTSLAIQIGSIAYVWMLLAVYLATKPKWLDRLIGLPSIYFIHGVLSMLAIALAYLHKEGTSSYGWIKTTGNWAFDLFWGLLVYSLVFMAGWLTSRFKPLLWLKKQLEILFKHELSVWIHRLNLIAVLLVFIHVQLISYITNMTIYIWLFNGYTIFVTGAYLLQKLRSRYGLAQGKLTAIQPIAANFYELTIQFKSHHALKLYPGDYVFINFPNIDHLKELHPFSILNSVVDGTITLAIRGDGDFSRAVQHAKVGSKVLIDGGYGRFNPIIKQHPDDELVLVTGGSGIVPMISLMRGLPNRRITLYYSAHSKAGLIYQQEIETLAAQRNNLTVHIQQGRFFRSVPRDLIRPNVTYLLSGPLALGQSWQKQLLNNGINEERVYYEEFSW
SIO_010081: AYR57_RS09290
subclass of: SO_0000673
so part of: AYR57_RS09290
location: complement(10055..11326)
location: region:10055-11326:-1
so has part: feature:10055-11326:-1:exon

WP_003581702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10055-11326:-1:exon

AYR57_RS09295
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09295
old locus tag: AYR57_09290
so part of: sequence
location: complement(11323..12081)
location: region:11323-12081:-1
so has part: feature:11323-12081:-1:exon
subclass of: SO_0000010

position:11323:-1
position: 11323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12081:-1
position: 12081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11323-12081:-1:exon

AYR57_RS09295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09295
old locus tag: AYR57_09290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003581705.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD:protein FMN transferase
translation: MKTYQQTIESMTMPFTIMIVSEPDSLSESRWHTTVTLIQTYLDHVDHLFSPFRSDSLVTQYQRHSLAVTNFNAEFQEVFALTVIAEEMTSGAFTANFSSQYDPTGIVKGWAIERAFQTYLKPLLNTGAIAVALNGAGDIRVGALVDSGYEWPIGIEDPEDTGQMLREIKIANGAVATSGSSKRGDHIRRLDSANTLTQATIIATNLIDADMLATTAISMGQIPFQTFAETHKLNAILLTAAHKLIMIDGDQS
SIO_010081: AYR57_RS09295
subclass of: SO_0000673
so part of: AYR57_RS09295
location: complement(11323..12081)
location: region:11323-12081:-1
so has part: feature:11323-12081:-1:exon

WP_065868898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11323-12081:-1:exon

AYR57_RS09300
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09300
old locus tag: AYR57_09295
so part of: sequence
location: complement(12078..12527)
location: region:12078-12527:-1
so has part: feature:12078-12527:-1:exon
subclass of: SO_0000010

position:12078:-1
position: 12078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12527:-1
position: 12527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12078-12527:-1:exon

AYR57_RS09300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09300
old locus tag: AYR57_09295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010621836.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0010181 - FMN binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FMN-binding protein
translation: MGILTFAIVTAIIIDNYFLFIRGKLSSDAQRTSQSSTTTTSSSPNSTSKTSTRKYKDGTYTGSTVSTQWGNVQVQAVVTNGKLTKVTVLKYPNVNRRDKQISSQALPTYKSEAITAQSANIKLVSGASETYKGFTGSLKNALKKAANDQ
SIO_010081: AYR57_RS09300
subclass of: SO_0000673
so part of: AYR57_RS09300
location: complement(12078..12527)
location: region:12078-12527:-1
so has part: feature:12078-12527:-1:exon

WP_231952028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12078-12527:-1:exon

AYR57_RS10070
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10070
pseudo: true
so part of: sequence
location: complement(12799..>13023)
location: region:12799-13023:-1
so has part: feature:12799-13023:-1:exon
subclass of: SO_0000010

position:12799:-1
position: 12799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13023:-1
position: 13023
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12799-13023:-1:exon

AYR57_RS10070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010078380.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
SIO_010081: AYR57_RS10070
subclass of: SO_0000673
so part of: AYR57_RS10070
location: complement(12799..>13023)
location: region:12799-13023:-1
so has part: feature:12799-13023:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12799-13023:-1:exon

AYR57_RS09305
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09305
old locus tag: AYR57_09300
pseudo: true
so part of: sequence
location: <13014..13385
location: region:13014-13385:1
so has part: feature:13014-13385:1:exon
subclass of: SO_0000010

position:13014:1
position: 13014
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:13385:1
position: 13385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13014-13385:1:exon

AYR57_RS09305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09305
old locus tag: AYR57_09300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016381866.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: protein TrsD
SIO_010081: AYR57_RS09305
subclass of: SO_0000673
so part of: AYR57_RS09305
location: <13014..13385
location: region:13014-13385:1
so has part: feature:13014-13385:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13014-13385:1:exon

AYR57_RS10075
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10075
so part of: sequence
location: complement(13424..13855)
location: region:13424-13855:-1
so has part: feature:13424-13855:-1:exon
subclass of: SO_0000010

position:13424:-1
position: 13424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13855:-1
position: 13855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13424-13855:-1:exon

AYR57_RS10075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKPITTLYSKHGTALRYLIVGGFTTGINVVLFFGLTHLARRVTAGGHGDFVHRPHLNARFAADCEADRPGRRHRAQLRLQQTNFRFERDELFVHAVPVNFDINGFLGPVIQSLGEASQHIHRPGDLNRPAVALMSFFFSWHK
SIO_010081: AYR57_RS10075
subclass of: SO_0000673
so part of: AYR57_RS10075
location: complement(13424..13855)
location: region:13424-13855:-1
so has part: feature:13424-13855:-1:exon

WP_063721285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13424-13855:-1:exon

AYR57_RS09315
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09315
old locus tag: AYR57_09310
so part of: sequence
location: complement(13871..15805)
location: region:13871-15805:-1
so has part: feature:13871-15805:-1:exon
subclass of: SO_0000010

position:13871:-1
position: 13871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15805:-1
position: 15805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13871-15805:-1:exon

AYR57_RS09315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09315
old locus tag: AYR57_09310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003593321.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIKPAFLPAILILCLLIGSIGNLTSVLGVPALLVVVLLGAGLYFGSPRLDHLSTRQLRWGIGLGLLAMLIAQVVVLHVMPNTVYHDPYRVLSQADQLAAGHMTWDITYFWRYANNVPLAYLLSLWLRLTQLVGLSTNLSVHLLSILVLDSFIALALHTIWQLNQRASLLVVAFGFFALSPFAYTYYLQVFYSDLPTMLVLLIIIRSLLNWSQKTSRQRWFAGSGLVVAVMLGAMLKPNLVVLLPALLIVGLILARQHLWRQAKLTLPILLIVLGFGLSLPATKVIDVAANYQPRTAFSFPATNWILMGYNQHSNGGYSGKDVGRAIKQPSQAARQRYNLKTIPKRIKTLGVVGVIRLWVVKLGIVLNVQGIQRWYNGGFRAAPSWYSNHAGFYQGLTVIGYVAATLLMWGALMLKLLRWRPDLTDPHQILALLAVTTALGYLAFHTLLWEVEPRYGQAILPLLWVALAAIPCQASQSRPRWANQASLLNGATALLVAFGAAGVLGAQLPQKQVIAAQRSQLSVQYHANPKTVTPGTVLAEVVDVNAPANYFSVQIHAGSQVQVTLTNLATGQHYRLTMAGSVARLHHQLAAGQYRITVQNLTTRGQQVDVTHTYHYQLAAHPLTVNGQSQPTASLIYTCMQR
SIO_010081: AYR57_RS09315
subclass of: SO_0000673
so part of: AYR57_RS09315
location: complement(13871..15805)
location: region:13871-15805:-1
so has part: feature:13871-15805:-1:exon

WP_065868899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13871-15805:-1:exon

AYR57_RS09320
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09320
old locus tag: AYR57_09315
so part of: sequence
location: complement(15815..16762)
location: region:15815-16762:-1
so has part: feature:15815-16762:-1:exon
subclass of: SO_0000010

position:15815:-1
position: 15815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16762:-1
position: 16762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15815-16762:-1:exon

AYR57_RS09320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09320
old locus tag: AYR57_09315
EC number: 2.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016373351.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MATSKLTIVVPAYNEEEVLTSSVQKLLAVEDQIAAQTVLGQRADILIVDDGSMDHTWDIIEKLHAMNSRVRGLRFSRNFGHQSALIAGMSEAVKTADMIVTIDADLQDDPDKIGDMVDAYADGADIVYGVRNNRETDSWFKRTTAQGYYKTLKLLGVEIVPNHADFRLMSKRAVETFLQYPERNIFIRGLIPKLGFKTAEVFYKRTPRMAGESKYQLKKMLAFAWDGITSLTIAPVRLILILGTLSCLLAVGMVVYAIVMKMLGLTVHGWSALMVSLWFVGGIQMISLGVIGEYIGKLTTEVKHRPRYTVQTILD
SIO_010081: AYR57_RS09320
subclass of: SO_0000673
so part of: AYR57_RS09320
location: complement(15815..16762)
location: region:15815-16762:-1
so has part: feature:15815-16762:-1:exon

WP_003593323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15815-16762:-1:exon

AYR57_RS09325
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09325
old locus tag: AYR57_09320
so part of: sequence
location: complement(16744..17415)
location: region:16744-17415:-1
so has part: feature:16744-17415:-1:exon
subclass of: SO_0000010

position:16744:-1
position: 16744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17415:-1
position: 17415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16744-17415:-1:exon

AYR57_RS09325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09325
old locus tag: AYR57_09320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002826711.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatase PAP2 family protein
translation: MPTKTKTLLGGLSLIAFAAIALGVITHAAWLAQLDAAASTLATRAIDPMNTALFKVVATLGSPATVIGLTALLCLWLWLQQGPVVSLWFAGLQLGGSAITEGFKLLIDRSRPLHQLVLDHGASFPSGHTFCTALLVFTLWTLCLPHIQDQETQLITVLIGIGWIAMVAISRVYLRDHYLSDVLASVCLASGWWLLVTPAEAFIQAKMRQFLPERMLKSWPHQN
SIO_010081: AYR57_RS09325
subclass of: SO_0000673
so part of: AYR57_RS09325
location: complement(16744..17415)
location: region:16744-17415:-1
so has part: feature:16744-17415:-1:exon

WP_003593325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16744-17415:-1:exon

AYR57_RS09330
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09330
old locus tag: AYR57_09325
so part of: sequence
location: complement(17405..18055)
location: region:17405-18055:-1
so has part: feature:17405-18055:-1:exon
subclass of: SO_0000010

position:17405:-1
position: 17405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18055:-1
position: 18055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17405-18055:-1:exon

AYR57_RS09330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09330
old locus tag: AYR57_09325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016373349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VTT domain-containing protein
translation: MTALITLLPNLNQLLPQLISQFGSLIYLGLFAMIFIETGVVVLPFLPGDSLLFLCGSLAAMANHSLNIWVLFGLLSVAAVLGDSLNFEIGEHFGLRLAHSAKLSRFIKPAYLERSQRFFDRHGKAAIFLGRFMPIIRTFIPFTAGVSQMRYRDFAVYNVLGGVTWVAVALGAGYLFGNIAIVKTHFELIMLAIVVISLAPAAFMALRHRGGADDAD
SIO_010081: AYR57_RS09330
subclass of: SO_0000673
so part of: AYR57_RS09330
location: complement(17405..18055)
location: region:17405-18055:-1
so has part: feature:17405-18055:-1:exon

WP_065868900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17405-18055:-1:exon

AYR57_RS09335
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09335
old locus tag: AYR57_09330
so part of: sequence
location: complement(18272..19630)
location: region:18272-19630:-1
so has part: feature:18272-19630:-1:exon
subclass of: SO_0000010

position:18272:-1
position: 18272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19630:-1
position: 19630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18272-19630:-1:exon

AYR57_RS09335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09335
old locus tag: AYR57_09330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511774.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAMP domain-containing sensor histidine kinase
translation: MKKNKQSSAAIMLRSMMRFIIIVTLLLGAAIIIAVGHQLLEDVQTTTSHITASLKQTDIDGDDDWESWRKNSTLDTSATYVYVHNKRADAKVSQYFSPHAEKVLKVTPTKVPFLTNVYYRPGIGLLYHRMVHARGIYYTLWQNTNPQLAVLLRVIEVTAILLAVTLLATPLYIRQLTKRLTDPLTTLSHTTQMIAGAKEPGAMRLPVPAQPTEVTELAGNFNELLSMLNERQEQQKLFVMNAAHELRTPIATIRSHAQLIERHGEDHPEIITKSVGYITEESRQMQQLIDELLQLSRADRLALDLTPLDLSAIVTTIMQKIAGTFEQTVTTEIQPDIHITGNESAIEQILVNLVTNAAKYSPAASQITVTLTQQANEAAALAVKDQGSGISAEDKSHIFERFYRSADVRGTVAGTGLGLAIATQLAQLSNSELTVADDQPQGTIFTLIFSTK
SIO_010081: AYR57_RS09335
subclass of: SO_0000673
so part of: AYR57_RS09335
location: complement(18272..19630)
location: region:18272-19630:-1
so has part: feature:18272-19630:-1:exon

WP_065868901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18272-19630:-1:exon

AYR57_RS09340
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09340
old locus tag: AYR57_09335
so part of: sequence
location: complement(19640..20335)
location: region:19640-20335:-1
so has part: feature:19640-20335:-1:exon
subclass of: SO_0000010

position:19640:-1
position: 19640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20335:-1
position: 20335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19640-20335:-1:exon

AYR57_RS09340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09340
old locus tag: AYR57_09335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002820251.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MKSTILLVEDEAGLADSLKTEFELENFNVLWANDGLIVLDMFRQNEAQIDLIILDWMLPHLDGFSVLRRIRKTSQVPIIMLTARDYIGDKVAGLTGGADDYVTKPFEMEELIARVEVALRHSQPAATTAAVYTAGNLNVDTDTKRVTRGGTIIPLTQREYELLVALISHQNEPCSREDLLDTVWGVDFDGQPNILDVYVRNLRSKIDTPNQPKLIHTVRGVGYMLSEHVAE
SIO_010081: AYR57_RS09340
subclass of: SO_0000673
so part of: AYR57_RS09340
location: complement(19640..20335)
location: region:19640-20335:-1
so has part: feature:19640-20335:-1:exon

WP_003580213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19640-20335:-1:exon

AYR57_RS09345
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09345
old locus tag: AYR57_09340
so part of: sequence
location: 20503..21426
location: region:20503-21426:1
so has part: feature:20503-21426:1:exon
subclass of: SO_0000010

position:20503:1
position: 20503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21426:1
position: 21426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20503-21426:1:exon

AYR57_RS09345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09345
old locus tag: AYR57_09340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013355080.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MSTTILSFQNRVVIETLHNEGRSLRYIANYLGFSKTTIFNELHRLNSEYQAGLAQTDFERKVSQRGRKSSLTKKLKHLIEGKIQVQKWSPEQVAHVVGIAYKTVYNWIDQGWLDIQLTDLPDHGIRRHRAKEKRGTFNHGRSIEDRPHKVETRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLHGRDSQSMTQAVLELASQLQDKLKTLTVDHGKEFANYQTIERRTGTQVYFAHAYSPHERGSNENRNRVLRRFIPKGQAIEELSDHQLVQINWYLNSRPLKCLNWHTPIEIFLLNLRH
SIO_010081: AYR57_RS09345
subclass of: SO_0000673
so part of: AYR57_RS09345
location: 20503..21426
location: region:20503-21426:1
so has part: feature:20503-21426:1:exon

WP_003581777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20503-21426:1:exon

AYR57_RS09350
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09350
old locus tag: AYR57_09345
so part of: sequence
location: 21538..23376
location: region:21538-23376:1
so has part: feature:21538-23376:1:exon
subclass of: SO_0000010

position:21538:1
position: 21538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23376:1
position: 23376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21538-23376:1:exon

AYR57_RS09350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09350
old locus tag: AYR57_09345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003577309.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MRHYYKLTLTVSVGIIALILQFGFHQQLAAQLIITLWGSVMALSMLVEMVKTLRSGKYGVDLLAITAIVATLAVSEYWAGLVVLIMLTGGDSLEDYAAKRANTELKALLDNSPRTAHRIQNEQLTDIAVEDAVVGDQLVVKPGELVPVDGHLIDGTAMFDESSLTGESKPVEKAVGDDLMSGAVNGDSAVTMIVDKLAADSQYQQLVKLVKESESRPAKFVRLADRYAVPFTLVAYVIAGIAWLISGDPHRFAEVLVVASPCPLILAAPVALVSGMSRTSRNGIVVKTGDMLEKMSTAKSAAFDKTGTITSGQLTVNDIVPQAGFTPDQILHLAASAEQNSSHILARSLVKFANDQPLSPVADLEEVTGNGVTATVDNAVVKVGKLKFVDPATTTAPLAQTAIYVAVDGRYAGYVTFIDNVRPEAAATLQALHAEGVKNVMMLTGDQQAIADNIAEAVGIDTVAADLLPADKIKHLKAVTKDERPVIMVGDGVNDAPSLAVADVGIAMGAHGSTAASESADVVILKDDLSRVVTVIQIAKDTMQVAKQAVWIGIAICTILMLIASTGIIPALFGAMLQEVVDTVSILWALRALRDRPNSNVKPLKPTTVHQN
SIO_010081: AYR57_RS09350
subclass of: SO_0000673
so part of: AYR57_RS09350
location: 21538..23376
location: region:21538-23376:1
so has part: feature:21538-23376:1:exon

WP_065868902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21538-23376:1:exon

AYR57_RS09355
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09355
old locus tag: AYR57_09350
pseudo: true
so part of: sequence
location: <23414..23632
location: region:23414-23632:1
so has part: feature:23414-23632:1:exon
subclass of: SO_0000010

position:23414:1
position: 23414
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:23632:1
position: 23632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23414-23632:1:exon

AYR57_RS09355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09355
old locus tag: AYR57_09350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
SIO_010081: AYR57_RS09355
subclass of: SO_0000673
so part of: AYR57_RS09355
location: <23414..23632
location: region:23414-23632:1
so has part: feature:23414-23632:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23414-23632:1:exon

AYR57_RS09360
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09360
old locus tag: AYR57_09355
so part of: sequence
location: complement(23650..24579)
location: region:23650-24579:-1
so has part: feature:23650-24579:-1:exon
subclass of: SO_0000010

position:23650:-1
position: 23650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24579:-1
position: 24579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23650-24579:-1:exon

AYR57_RS09360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09360
old locus tag: AYR57_09355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
translation: MSSITYSERIKIEIFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
SIO_010081: AYR57_RS09360
subclass of: SO_0000673
so part of: AYR57_RS09360
location: complement(23650..24579)
location: region:23650-24579:-1
so has part: feature:23650-24579:-1:exon

WP_024855727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23650-24579:-1:exon

AYR57_RS09370
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09370
old locus tag: AYR57_09365
pseudo: true
so part of: sequence
location: complement(<24857..25114)
location: region:24857-25114:-1
so has part: feature:24857-25114:-1:exon
subclass of: SO_0000010

position:24857:-1
position: 24857
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:25114:-1
position: 25114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24857-25114:-1:exon

AYR57_RS09370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09370
old locus tag: AYR57_09365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: AYR57_RS09370
subclass of: SO_0000673
so part of: AYR57_RS09370
location: complement(<24857..25114)
location: region:24857-25114:-1
so has part: feature:24857-25114:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24857-25114:-1:exon

AYR57_RS09375
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09375
old locus tag: AYR57_09370
so part of: sequence
location: 25113..25313
location: region:25113-25313:1
so has part: feature:25113-25313:1:exon
subclass of: SO_0000010

position:25113:1
position: 25113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25313:1
position: 25313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25113-25313:1:exon

AYR57_RS09375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09375
old locus tag: AYR57_09370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019901252.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNSSVGFPQFYQIQQILDRFLGLKNKLNDLHHEISNRTQKQLKAFAKQNPEIKQPDSEPDQSLKR
SIO_010081: AYR57_RS09375
subclass of: SO_0000673
so part of: AYR57_RS09375
location: 25113..25313
location: region:25113-25313:1
so has part: feature:25113-25313:1:exon

WP_024855729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25113-25313:1:exon

AYR57_RS09380
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09380
old locus tag: AYR57_09375
so part of: sequence
location: complement(25483..26724)
location: region:25483-26724:-1
so has part: feature:25483-26724:-1:exon
subclass of: SO_0000010

position:25483:-1
position: 25483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26724:-1
position: 26724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25483-26724:-1:exon

AYR57_RS09380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09380
old locus tag: AYR57_09375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003716822.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3 family transposase
translation: MSLTNSILCLFEITDPNLIVTGISKERCSTNQRIHVVHATLSYQLLKCPHCGHKSLIKNGTHMSHLRLGTLSGGRYEMHLKRQRYQCKDCSKTCGAKTKLVNRNETFTHNIKHQVIVLARDMLTSKEIAKLCGISPSSVQRILNANIHLAYRVKHLPENLCFDEFRSCNHWMSFNCCDAVSHRRIVTLKDRLSKDIIDYFEARFSVQERAQVQSVTIDMNAEYGSFIHRLFPNAATIIDRFHIIQLAGRALDNERTQTIRTIQDKHSRIYHILKSQWRLFHLDEIKVNDSKAVYLRGINEYMTQQNAIDLALDAFPRFRSVYQTYQGILSAIHQKDANAFQSLLTNYQPTSNQMDITINTFIKNGSALLNSCRYPFSNGPIEGLNRKIKALKRNCFGFRNIDNFFIRISLIHE
SIO_010081: AYR57_RS09380
subclass of: SO_0000673
so part of: AYR57_RS09380
location: complement(25483..26724)
location: region:25483-26724:-1
so has part: feature:25483-26724:-1:exon

WP_063697918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25483-26724:-1:exon

AYR57_RS10080
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10080
so part of: sequence
location: complement(26938..26991)
location: region:26938-26991:-1
so has part: feature:26938-26991:-1:exon
subclass of: SO_0000010

position:26938:-1
position: 26938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26991:-1
position: 26991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26938-26991:-1:exon

AYR57_RS10080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10080
inference: COORDINATES: protein motif:HMM:NF028245.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNAGFRYFYRGLNRINC
SIO_010081: AYR57_RS10080
subclass of: SO_0000673
so part of: AYR57_RS10080
location: complement(26938..26991)
location: region:26938-26991:-1
so has part: feature:26938-26991:-1:exon

WP_230633414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26938-26991:-1:exon

AYR57_RS09390
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09390
old locus tag: AYR57_09385
so part of: sequence
location: 27357..28133
location: region:27357-28133:1
so has part: feature:27357-28133:1:exon
subclass of: SO_0000010

position:27357:1
position: 27357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28133:1
position: 28133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27357-28133:1:exon

AYR57_RS09390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09390
old locus tag: AYR57_09385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKVIQLFIGQSWELILNIIQWISINISVGWLAFGLAVITFLRNRHRKLRQSFEYSSGNNNFETAISIYNDSLGTEASQLLGIMVTDKKFYLYRKLLPYIIRVKLRLCKDSNSKTTHTTRSWTYRLFLLFIDKIKSKNYKKQYEDKDLYPYLQMVNIQNGDEIAATGFIPIKSHEMRTIVIPKGRFLDAVKNRLTSNYKALKRFVNKKPVYIYFIYQTMSGTVKEFVVETDYQDSLGKDLDMEYLTKILAVQDKYKTK
SIO_010081: AYR57_RS09390
subclass of: SO_0000673
so part of: AYR57_RS09390
location: 27357..28133
location: region:27357-28133:1
so has part: feature:27357-28133:1:exon

WP_024855730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27357-28133:1:exon

AYR57_RS09395
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09395
old locus tag: AYR57_09390
so part of: sequence
location: 28241..28825
location: region:28241-28825:1
so has part: feature:28241-28825:1:exon
subclass of: SO_0000010

position:28241:1
position: 28241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28825:1
position: 28825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28241-28825:1:exon

AYR57_RS09395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09395
old locus tag: AYR57_09390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNHDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYTQDDPRLQHAFKLYQAGMSDVDVARNTGIKRTTFIRYRKKFNIQR
SIO_010081: AYR57_RS09395
subclass of: SO_0000673
so part of: AYR57_RS09395
location: 28241..28825
location: region:28241-28825:1
so has part: feature:28241-28825:1:exon

WP_065868903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28241-28825:1:exon

AYR57_RS09400
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09400
old locus tag: AYR57_09395
so part of: sequence
location: 29185..30390
location: region:29185-30390:1
so has part: feature:29185-30390:1:exon
subclass of: SO_0000010

position:29185:1
position: 29185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30390:1
position: 30390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29185-30390:1:exon

AYR57_RS09400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09400
old locus tag: AYR57_09395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825823.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSDLDQTNSYRYVIVGGGVVAGYAIKGIRQEDSEGEILIISQEADVPYERPALSKKLWLDDEFTEENIQIGAENYPNVTFKFKTTVTAINRQDKVITLADSEQIKYEQLLLATGGEPRQIQGPSDPHVLVFRQWSDYRKLRKFSGPNKRVVIIGGGYVGTELASSLTQNETEVTMIFPEKALGEGKFPESIRTEYEATFKRNGVTLMSGQFVQSYQRQGDHLTLLTKDGTVIAADTIIVGLGVTPRISLAEDSCLDLADGGVKVNEYLNTSDPAIWSAGDIASYPDHILGRQRIEHVDHARLSGELVGRNMAGAHMSYQHTPYFYSMIFDISWQAIGNIDPKLQLIFDRRTHGSLVYFIDTDKLVGVLVWNVKVNLDDVRALLANAPATDDLVGSIREKKA
SIO_010081: AYR57_RS09400
subclass of: SO_0000673
so part of: AYR57_RS09400
location: 29185..30390
location: region:29185-30390:1
so has part: feature:29185-30390:1:exon

WP_002825823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29185-30390:1:exon

AYR57_RS10085
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10085
so part of: sequence
location: complement(30550..30930)
location: region:30550-30930:-1
so has part: feature:30550-30930:-1:exon
subclass of: SO_0000010

position:30550:-1
position: 30550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30930:-1
position: 30930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30550-30930:-1:exon

AYR57_RS10085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10085
inference: COORDINATES: protein motif:HMM:NF012870.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MSNSPNCILITKTVDELINKLPSNVQPITHSDQGWHYQLDSYTKKLSEHEFIQSMSRKGNCHDNAPIESFFRLYKTECLAGFPPCKGLAELKAVSLEYVNWFNYRRISSKTKGMSPCEYREHTLAA
SIO_010081: AYR57_RS10085
subclass of: SO_0000673
so part of: AYR57_RS10085
location: complement(30550..30930)
location: region:30550-30930:-1
so has part: feature:30550-30930:-1:exon

WP_231952029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30550-30930:-1:exon

AYR57_RS10090
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10090
so part of: sequence
location: complement(31459..31746)
location: region:31459-31746:-1
so has part: feature:31459-31746:-1:exon
subclass of: SO_0000010

position:31459:-1
position: 31459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31746:-1
position: 31746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31459-31746:-1:exon

AYR57_RS10090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10090
inference: COORDINATES: protein motif:HMM:NF013677.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MINYYQTHDESLAEVAGKYNVLACQISVWRKTLIRDGYSSLEPHPKGRSTKTKRSKKQIRQLEKQSEIERLRSEIAQKNQEFYDTKLENDILKNQ
SIO_010081: AYR57_RS10090
subclass of: SO_0000673
so part of: AYR57_RS10090
location: complement(31459..31746)
location: region:31459-31746:-1
so has part: feature:31459-31746:-1:exon

WP_231952026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31459-31746:-1:exon

AYR57_RS10095
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10095
pseudo: true
so part of: sequence
location: complement(<31849..31914)
location: region:31849-31914:-1
so has part: feature:31849-31914:-1:exon
subclass of: SO_0000010

position:31849:-1
position: 31849
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:31914:-1
position: 31914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31849-31914:-1:exon

AYR57_RS10095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10095
inference: COORDINATES: protein motif:HMM:NF024908.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: AYR57_RS10095
subclass of: SO_0000673
so part of: AYR57_RS10095
location: complement(<31849..31914)
location: region:31849-31914:-1
so has part: feature:31849-31914:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31849-31914:-1:exon

AYR57_RS10100
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS10100
old locus tag: AYR57_09410
so part of: sequence
location: complement(31933..32454)
location: region:31933-32454:-1
so has part: feature:31933-32454:-1:exon
subclass of: SO_0000010

position:31933:-1
position: 31933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32454:-1
position: 32454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31933-32454:-1:exon

AYR57_RS10100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS10100
old locus tag: AYR57_09410
inference: COORDINATES: protein motif:HMM:NF033516.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MHQESHHHQVTKMCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQRRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSAIMDLHSRRIIGYSFSKKMDTDLVLR
SIO_010081: AYR57_RS10100
subclass of: SO_0000673
so part of: AYR57_RS10100
location: complement(31933..32454)
location: region:31933-32454:-1
so has part: feature:31933-32454:-1:exon

WP_257841738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31933-32454:-1:exon

AYR57_RS09425
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09425
old locus tag: AYR57_09420
so part of: sequence
location: 32858..34186
location: region:32858-34186:1
so has part: feature:32858-34186:1:exon
subclass of: SO_0000010

position:32858:1
position: 32858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34186:1
position: 34186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32858-34186:1:exon

AYR57_RS09425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09425
old locus tag: AYR57_09420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003591692.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - cation transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside-pentoside-hexuronide (GPH):cation symporter
translation: MKSTTKWVTRWPERISYGLSDAADNLVFQMMTTYLLFFYTDVYGLTPSAVAILFVVARVADVVESFVIGIMIDHTHSRFGKSRPFFLWYSLPYVIFAVLTFVTPNFSYNGKLIWAYVTYLGLGFLYTAVNLPITSILPTMSQNTRELTLLGVIRQFFGSSVQIVVAVFTLPLVAFFGHGNQQKGFLGTIIVFSLISFLLIINTFVHVRERFANPEIAHQPLTTVLKMLKHNQPWIVMSIVILMYWLVTAIKNQTTIYYFKYTVGNENLVPLANSFTLAALIGVLLIIRITEVRSKKQTMLRGILMALVGQAVIAVGVYTKILWFLFGGVLINSIGNGIIIGLVSIMIADTIRYGASMGIQAEGILASTDDFGVNVGLGVGGLITAGLFHFSGYVANRTQNAATLTMIDLNYVWIPLVIYVGMYFVLRLYDEGRIERAIEARK
SIO_010081: AYR57_RS09425
subclass of: SO_0000673
so part of: AYR57_RS09425
location: 32858..34186
location: region:32858-34186:1
so has part: feature:32858-34186:1:exon

WP_056973910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32858-34186:1:exon

AYR57_RS09430
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09430
old locus tag: AYR57_09425
so part of: sequence
location: 34326..35009
location: region:34326-35009:1
so has part: feature:34326-35009:1:exon
subclass of: SO_0000010

position:34326:1
position: 34326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35009:1
position: 35009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34326-35009:1:exon

AYR57_RS09430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09430
old locus tag: AYR57_09425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003660036.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MNHFKGRHFQKDIILVAVGYYFRFSLSYRDIVELLRDRGITVHHTTVMRWVHHYGPIFKALWRRHQTAHAKSWRIDETYIRVKGRWAYLYRAIDSNGLTMDFELRKHRDYTASYHFLKRLLTTNGRPDRLVTDQYRATLKAVKHLIKQDYLSKSAHQCSKYRNNLIEQDHRFIKRHRVRSASFQSIRTASATLSGVEIVHAILKRTRRELSLIGFSVVDELEALLAA
SIO_010081: AYR57_RS09430
subclass of: SO_0000673
so part of: AYR57_RS09430
location: 34326..35009
location: region:34326-35009:1
so has part: feature:34326-35009:1:exon

WP_065868904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34326-35009:1:exon

AYR57_RS09435
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09435
old locus tag: AYR57_09430
so part of: sequence
location: complement(35050..35277)
location: region:35050-35277:-1
so has part: feature:35050-35277:-1:exon
subclass of: SO_0000010

position:35050:-1
position: 35050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35277:-1
position: 35277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35050-35277:-1:exon

AYR57_RS09435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09435
old locus tag: AYR57_09430
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MFELAVSLIDTDNPPKDQTVYLSKQELFAFFKVDDSNKHSRFKEAIEKMQKQAFFQIKIVQDKGFDFERDLVQTV
SIO_010081: AYR57_RS09435
subclass of: SO_0000673
so part of: AYR57_RS09435
location: complement(35050..35277)
location: region:35050-35277:-1
so has part: feature:35050-35277:-1:exon

WP_065868905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35050-35277:-1:exon

AYR57_RS09440
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09440
old locus tag: AYR57_09435
pseudo: true
so part of: sequence
location: complement(35321..>35626)
location: region:35321-35626:-1
so has part: feature:35321-35626:-1:exon
subclass of: SO_0000010

position:35321:-1
position: 35321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35626:-1
position: 35626
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35321-35626:-1:exon

AYR57_RS09440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09440
old locus tag: AYR57_09435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012211205.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: AYR57_RS09440
subclass of: SO_0000673
so part of: AYR57_RS09440
location: complement(35321..>35626)
location: region:35321-35626:-1
so has part: feature:35321-35626:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35321-35626:-1:exon

AYR57_RS09445
type: Gene
subclass of: SO_0000704
RO_0002162: 187452
locus tag: AYR57_RS09445
old locus tag: AYR57_09440
so part of: sequence
location: 35684..37048
location: region:35684-37048:1
so has part: feature:35684-37048:1:exon
subclass of: SO_0000010

position:35684:1
position: 35684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37048:1
position: 37048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35684-37048:1:exon

AYR57_RS09445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 187452
locus tag: AYR57_RS09445
old locus tag: AYR57_09440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020807835.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MDKRKIVIVGASHGGHESAIELLDKYNDVDVTVYEAGDFISFMSCGMQLYLENKVTAEDDVRNFAPEDVEKKGGHVYANHEVTAIHPEHKTVTVKDLTNNAEEEVQYDKLILSSGVTPKVLPVPGNDLKNIYLMRGRDWASKLMSAVNNPAIKNVAIVGAGYIGTEASEVFAKAGKHVTLMDMIDRPLGTYLNPELLDVLEPTFKKNMDLKMGVKIEGFNGNEKVESVKTDQGDIPADLVVVSAGVTPNTDWIKGTVDLDQRGWIKTDPYLRTNVKDVYAIGDAILPLSIPAGKPMPITLATTARREAQYVVDHIFEDKPDRAFKGVIGASALSVFDYHFATAGLNKFSAAKNKLDYQTSFYEDHMRPAYVPEADNPKVYVSLTFNPYTHQILGGAVLSKYDITAQGNVLALAISHKMRLEDLAEQDFLFQPGFDRQWSLLNLAAQHALGMARF
SIO_010081: AYR57_RS09445
subclass of: SO_0000673
so part of: AYR57_RS09445
location: 35684..37048
location: region:35684-37048:1
so has part: feature:35684-37048:1:exon

WP_065868907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35684-37048:1:exon