Vidua macroura isolate BioBank_ID:100142 chromosome W, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044099.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
splicing regulatory glutamine/lysine-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
splicing regulatory glutamine/lysine-rich protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
splicing regulatory glutamine/lysine-rich protein 1-like isoform X1
splicing regulatory glutamine/lysine-rich protein 1-like isoform X2
SET-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
RNA-binding E3 ubiquitin-protein ligase MEX3C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding E3 ubiquitin-protein ligase MEX3C-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
RNA-binding E3 ubiquitin-protein ligase MEX3C-like isoform X2
RNA-binding E3 ubiquitin-protein ligase MEX3C-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
RNA-binding E3 ubiquitin-protein ligase MEX3C-like, transcript variant X1
RNA-binding E3 ubiquitin-protein ligase MEX3C-like isoform X1
mothers against decapentaplegic homolog 4; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 4, transcript variant X1
mothers against decapentaplegic homolog 4 isoform X1
mothers against decapentaplegic homolog 4, transcript variant X5
mothers against decapentaplegic homolog 4, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
mothers against decapentaplegic homolog 4 isoform X2
mothers against decapentaplegic homolog 4, transcript variant X4
mothers against decapentaplegic homolog 4, transcript variant X3
mothers against decapentaplegic homolog 4 isoform X3
mothers against decapentaplegic homolog 4, transcript variant X6
mothers against decapentaplegic homolog 4 isoform X4
uncharacterized LOC128821379; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 3 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128821379
NAD-dependent malic enzyme, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
NAD-dependent malic enzyme, mitochondrial-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: NAD-dependent malic enzyme, mitochondrial-like
nipped-B-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
nipped-B-like protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
nipped-B-like protein, transcript variant X2
activated RNA polymerase II transcriptional coactivator p15-like; Derived by automated computational analysis using gene prediction method: Gnomon.
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X1
activated RNA polymerase II transcriptional coactivator p15-like isoform X1
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X2
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X3
activated RNA polymerase II transcriptional coactivator p15-like isoform X2
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X4
activated RNA polymerase II transcriptional coactivator p15-like isoform X3
zinc finger SWIM domain-containing protein 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger SWIM domain-containing protein 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
Golgi phosphoprotein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Golgi phosphoprotein 3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
Golgi phosphoprotein 3-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
uncharacterized LOC128821389; Derived by automated computational analysis using gene prediction method: Gnomon.
60S ribosomal protein L37-like; Derived by automated computational analysis using gene prediction method: Gnomon.
small nucleolar RNA SNORD72; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00577
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC128821390; Derived by automated computational analysis using gene prediction method: Gnomon.
5'-AMP-activated protein kinase catalytic subunit alpha-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
5'-AMP-activated protein kinase catalytic subunit alpha-1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
5'-AMP-activated protein kinase catalytic subunit alpha-1-like isoform X3
5'-AMP-activated protein kinase catalytic subunit alpha-1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
5'-AMP-activated protein kinase catalytic subunit alpha-1-like isoform X1
5'-AMP-activated protein kinase catalytic subunit alpha-1-like, transcript variant X2
5'-AMP-activated protein kinase catalytic subunit alpha-1-like isoform X2
uncharacterized LOC128821383; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC128821383
guanine nucleotide-binding protein G(q) subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins
guanine nucleotide-binding protein G(q) subunit alpha isoform X1
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
guanine nucleotide-binding protein G(q) subunit alpha isoform X2