Vidua macroura isolate BioBank_ID:100142 chromosome 39, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044098.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
ubiquitin like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
Fas binding factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ER membrane protein complex subunit 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
interferon regulatory factor 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
XPA binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
protein PET100 homolog, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
protein PET100 homolog, mitochondrial, transcript variant X1
protein PET100 homolog, mitochondrial, transcript variant X2
protein PET100 homolog, mitochondrial, transcript variant X3
protein PET100 homolog, mitochondrial, transcript variant X5
protein PET100 homolog, mitochondrial, transcript variant X4
protein PET100 homolog, mitochondrial isoform X1
protein PET100 homolog, mitochondrial isoform X3
protein PET100 homolog, mitochondrial isoform X2
Purkinje cell protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: Purkinje cell protein 2 homolog
trafficking protein particle complex subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 5
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: trafficking protein particle complex subunit 5
NADH:ubiquinone oxidoreductase subunit B7; Derived by automated computational analysis using gene prediction method: Gnomon.
NADH:ubiquinone oxidoreductase subunit B7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
trans-2,3-enoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Gnomon.
trans-2,3-enoyl-CoA reductase, transcript variant X4
trans-2,3-enoyl-CoA reductase, transcript variant X2
trans-2,3-enoyl-CoA reductase, transcript variant X1
very-long-chain enoyl-CoA reductase isoform X3
very-long-chain enoyl-CoA reductase isoform X1
trans-2,3-enoyl-CoA reductase, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
very-long-chain enoyl-CoA reductase isoform X2
DnaJ heat shock protein family (Hsp40) member B1; Derived by automated computational analysis using gene prediction method: Gnomon.
DnaJ heat shock protein family (Hsp40) member B1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins
GIPC PDZ domain containing family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GIPC PDZ domain containing family member 1
ecotropic viral integration site 5 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
ilvB acetolactate synthase like; Derived by automated computational analysis using gene prediction method: Gnomon.
complement C3; Derived by automated computational analysis using gene prediction method: Gnomon.
proto-oncogene vav-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: proto-oncogene vav-like
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
epoxide hydrolase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
bromodomain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: bromodomain-containing protein 4
A-kinase anchoring protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821356; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8 like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: A-kinase anchor protein 8-like
WIZ zinc finger; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ribonucleoprotein, PTB binding 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
LOW QUALITY PROTEIN: ribonucleoprotein PTB-binding 1
tyrosine kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: non-receptor tyrosine-protein kinase TYK2
cell division cycle 37, HSP90 cochaperone; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle 37, HSP90 cochaperone
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
LOW QUALITY PROTEIN: hsp90 co-chaperone Cdc37
hook microtubule tethering protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: protein Hook homolog 2
uncharacterized LOC128821359; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821358; Derived by automated computational analysis using gene prediction method: Gnomon.
sphingosine-1-phosphate receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: sphingosine 1-phosphate receptor 2
patatin-like phospholipase domain-containing protein 6; Derived by automated computational analysis using gene prediction method: Gnomon.
patatin-like phospholipase domain-containing protein 6
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: patatin-like phospholipase domain-containing protein 6
ATPase 13A1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: endoplasmic reticulum transmembrane helix translocase
coiled-coil-helix-coiled-coil-helix domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil-helix-coiled-coil-helix domain containing 5
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: coiled-coil-helix-coiled-coil-helix domain-containing protein 5
olfactomedin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain 83 opposite strand; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
LOW QUALITY PROTEIN: PAT complex subunit Asterix
WD repeat domain 83; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 9 bases in 8 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 9 bases in 8 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: WD repeat domain-containing protein 83
deoxyhypusine synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
LOW QUALITY PROTEIN: deoxyhypusine synthase
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 883-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 132 Proteins
zinc finger protein 883-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
zinc finger protein 883-like, transcript variant X1
zinc finger protein 883-like, transcript variant X4
zinc finger protein 883-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 117 Proteins
zinc finger protein 883-like, transcript variant X3
retinol dehydrogenase 8; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: retinol dehydrogenase 8
peter pan homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: suppressor of SWI4 1 homolog
eukaryotic translation initiation factor 3 subunit G; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit G, transcript variant X4
eukaryotic translation initiation factor 3 subunit G, transcript variant X1
eukaryotic translation initiation factor 3 subunit G, transcript variant X3
eukaryotic translation initiation factor 3 subunit G, transcript variant X2
eukaryotic translation initiation factor 3 subunit G
uncharacterized LOC128821357; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA methyltransferase 1, transcript variant X2
DNA methyltransferase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
DNA (cytosine-5)-methyltransferase 1 isoform X2
DNA (cytosine-5)-methyltransferase 1 isoform X1
mucolipin TRP cation channel 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
zinc finger protein 665-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 665-like, transcript variant X1
zinc finger protein 665-like, transcript variant X3
zinc finger protein 665-like, transcript variant X2
RAS protein activator like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method: Gnomon.
procollagen galactosyltransferase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
procollagen galactosyltransferase 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 6 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: procollagen galactosyltransferase 1-like
uncharacterized LOC128821355; Derived by automated computational analysis using gene prediction method: Gnomon.