Vidua macroura isolate BioBank_ID:100142 chromosome 38, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044097.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128821316; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC128821315; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821315, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821315, transcript variant X1
serine/threonine-protein kinase pim-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
serine/threonine-protein kinase pim-1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase pim-1-like
maestro heat-like repeat family member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat family member 5
serine/threonine-protein kinase pim-1-like, transcript variant X3
serine/threonine-protein kinase pim-1-like, transcript variant X1
zinc finger protein 660-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 2-like
uncharacterized LOC128821304; Derived by automated computational analysis using gene prediction method: Gnomon.
ceramide synthase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
ceramide synthase 5, transcript variant X3
ceramide synthase 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
ceramide synthase 5, transcript variant X1
cytochrome c oxidase assembly protein COX14 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase assembly protein COX14 homolog, transcript variant X1
cytochrome c oxidase assembly protein COX14 homolog, transcript variant X3
cytochrome c oxidase assembly protein COX14 homolog, transcript variant X2
cytochrome c oxidase assembly protein COX14 homolog
glycerol-3-phosphate dehydrogenase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
glycerol-3-phosphate dehydrogenase 1, transcript variant X2
glycerol-3-phosphate dehydrogenase 1, transcript variant X1
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X2
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
uncharacterized LOC128821303; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821303, transcript variant X1
uncharacterized LOC128821303, transcript variant X2
acid sensing ion channel subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
acid sensing ion channel subunit 1, transcript variant X2
acid sensing ion channel subunit 1, transcript variant X1
Rac GTPase activating protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Rac GTPase activating protein 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Rac GTPase activating protein 1, transcript variant X1
Rac GTPase activating protein 1, transcript variant X2
Rac GTPase activating protein 1, transcript variant X3
interferon-induced protein with tetratricopeptide repeats 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interferon-induced protein with tetratricopeptide repeats 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
histone deacetylase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
histone deacetylase 7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
uncharacterized LOC128821322; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821322, transcript variant X1
uncharacterized LOC128821322, transcript variant X2
histone deacetylase 7, transcript variant X3
histone deacetylase 7, transcript variant X1
histone deacetylase 7, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
twist-related protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
twist-related protein 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
twist-related protein 2-like, transcript variant X1
twist-related protein 2-like, transcript variant X2
solute carrier family 48 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Rap guanine nucleotide exchange factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Rap guanine nucleotide exchange factor 3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 3
endonuclease, poly(U) specific; Derived by automated computational analysis using gene prediction method: Gnomon.
endonuclease, poly(U) specific, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uridylate-specific endoribonuclease isoform X3
endonuclease, poly(U) specific, transcript variant X1
endonuclease, poly(U) specific, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
uridylate-specific endoribonuclease isoform X1
uridylate-specific endoribonuclease isoform X2
neuronal differentiation 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
sporozoite surface protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
thymocyte expressed, positive selection associated 1; Derived by automated computational analysis using gene prediction method: Gnomon.
thymocyte expressed, positive selection associated 1
protein phosphatase 1 regulatory inhibitor subunit 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory inhibitor subunit 1A, transcript variant X1
protein phosphatase 1 regulatory inhibitor subunit 1A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
protein phosphatase 1 regulatory subunit 1A isoform X1
protein phosphatase 1 regulatory subunit 1A isoform X2
phosphodiesterase 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
NCK associated protein 1 like; Derived by automated computational analysis using gene prediction method: Gnomon.
gametocyte specific factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
gametocyte specific factor 1, transcript variant X1
gametocyte specific factor 1, transcript variant X2
integrin alpha-5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein