Vidua macroura isolate BioBank_ID:100142 chromosome 37, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044096.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128821291; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821235; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein OZF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821287; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821287, transcript variant X4
uncharacterized LOC128821287, transcript variant X3
uncharacterized LOC128821287, transcript variant X2
uncharacterized LOC128821287, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
N-acetylmuramoyl-L-alanine amidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
N-acetylmuramoyl-L-alanine amidase-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
N-acetylmuramoyl-L-alanine amidase-like, transcript variant X1
N-acetylmuramoyl-L-alanine amidase-like isoform X3
N-acetylmuramoyl-L-alanine amidase-like isoform X1
N-acetylmuramoyl-L-alanine amidase-like, transcript variant X4
N-acetylmuramoyl-L-alanine amidase-like, transcript variant X2
N-acetylmuramoyl-L-alanine amidase-like isoform X2
N-acetylmuramoyl-L-alanine amidase-like isoform X4
hydroperoxide isomerase ALOXE3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821284; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 275 Proteins
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
rano class II histocompatibility antigen, D-1 beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
rano class II histocompatibility antigen, D-1 beta chain-like
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 3-like
zinc finger protein 774-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821285; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 169 Proteins
uncharacterized LOC128821242; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like, transcript variant X2
zinc finger protein 239-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
serine/threonine-protein kinase PAK 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 1-like
zinc finger and SCAN domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 2-like
zinc finger protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
zinc finger protein 3-like, transcript variant X1
zinc finger protein 239-like, transcript variant X3
class I histocompatibility antigen, F10 alpha chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X2
class I histocompatibility antigen, F10 alpha chain-like isoform X2
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X1
class I histocompatibility antigen, F10 alpha chain-like isoform X1
H-2 class II histocompatibility antigen, I-E beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
H-2 class II histocompatibility antigen, I-E beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 124 Proteins
uncharacterized LOC128821288; Derived by automated computational analysis using gene prediction method: Gnomon.
LWamide neuropeptides-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: LWamide neuropeptides-like
serine/threonine-protein kinase PAK 3-like, transcript variant X2
serine/threonine-protein kinase PAK 3-like isoform X2
serine/threonine-protein kinase PAK 3-like, transcript variant X1
serine/threonine-protein kinase PAK 3-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
zinc finger protein 397-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 163 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 199 Proteins
class I histocompatibility antigen, F10 alpha chain-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: class I histocompatibility antigen, F10 alpha chain-like
flotillin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
tubulin beta class I; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator of DNA damage checkpoint 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 3 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1
coiled-coil alpha-helical rod protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil alpha-helical rod protein 1-like, transcript variant X1
coiled-coil alpha-helical rod protein 1-like, transcript variant X2
coiled-coil alpha-helical rod protein 1-like, transcript variant X4
coiled-coil alpha-helical rod protein 1-like, transcript variant X3
coiled-coil alpha-helical rod protein 1-like, transcript variant X6
coiled-coil alpha-helical rod protein 1-like, transcript variant X5
coiled-coil alpha-helical rod protein 1-like isoform X1
coiled-coil alpha-helical rod protein 1-like isoform X2
coiled-coil alpha-helical rod protein 1-like isoform X4
coiled-coil alpha-helical rod protein 1-like isoform X3
coiled-coil alpha-helical rod protein 1-like isoform X5
uncharacterized LOC128821265; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821266; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821264; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821276; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821276, transcript variant X2
uncharacterized LOC128821276, transcript variant X1
RELT-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
zinc finger and BTB domain containing 22; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
zinc finger and BTB domain-containing protein 22
death domain-associated protein 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821290; Derived by automated computational analysis using gene prediction method: Gnomon.