Vidua macroura isolate BioBank_ID:100142 chromosome 35, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044094.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC128821185; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC128821188; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
GPN-loop GTPase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 512; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 512, transcript variant X1
zinc finger protein 512, transcript variant X3
zinc finger protein 512, transcript variant X2
fibronectin type III domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
fibronectin type III domain containing 4, transcript variant X1
fibronectin type III domain-containing protein 4 isoform X1
fibronectin type III domain containing 4, transcript variant X2
fibronectin type III domain-containing protein 4 isoform X2
fibronectin type III domain containing 4, transcript variant X3
fibronectin type III domain-containing protein 4 isoform X3
low density lipoprotein receptor adapter protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
low density lipoprotein receptor adapter protein 1-like, transcript variant X3
low density lipoprotein receptor adapter protein 1-like, transcript variant X2
low density lipoprotein receptor adapter protein 1-like, transcript variant X1
low density lipoprotein receptor adapter protein 1-like isoform X3
low density lipoprotein receptor adapter protein 1-like isoform X2
low density lipoprotein receptor adapter protein 1-like isoform X1
intraflagellar transport 172; Derived by automated computational analysis using gene prediction method: Gnomon.
intraflagellar transport 172, transcript variant X1
intraflagellar transport 172, transcript variant X2
intraflagellar transport protein 172 homolog isoform X1
intraflagellar transport protein 172 homolog isoform X2
keratinocyte associated protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
keratinocyte associated protein 3, transcript variant X1
keratinocyte associated protein 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
nuclear receptor binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear receptor binding protein 1, transcript variant X1
nuclear receptor binding protein 1, transcript variant X2
nuclear receptor-binding protein isoform X2
nuclear receptor-binding protein isoform X1
protein phosphatase, Mg2+/Mn2+ dependent 1G; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase, Mg2+/Mn2+ dependent 1G, transcript variant X1
protein phosphatase, Mg2+/Mn2+ dependent 1G, transcript variant X2
E3 ubiquitin-protein ligase RNF19B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 513; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 513, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
zinc finger protein 513, transcript variant X1
zinc finger protein 513, transcript variant X2
zinc finger protein 513, transcript variant X4
sorting nexin 17; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2B subunit delta; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2B subunit delta, transcript variant X2
eukaryotic translation initiation factor 2B subunit delta, transcript variant X3
eukaryotic translation initiation factor 2B subunit delta, transcript variant X4
eukaryotic translation initiation factor 2B subunit delta, transcript variant X1
translation initiation factor eIF-2B subunit delta isoform X1
translation initiation factor eIF-2B subunit delta isoform X2
translation initiation factor eIF-2B subunit delta isoform X3
translation initiation factor eIF-2B subunit delta isoform X4
U1 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00003
Derived by automated computational analysis using gene prediction method: cmsearch.
general transcription factor IIIC subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
general transcription factor IIIC subunit 2, transcript variant X1
general transcription factor IIIC subunit 2, transcript variant X2
general transcription factor IIIC subunit 2, transcript variant X3
general transcription factor IIIC subunit 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
general transcription factor 3C polypeptide 2 isoform X1
general transcription factor 3C polypeptide 2 isoform X2
general transcription factor 3C polypeptide 2 isoform X3
general transcription factor 3C polypeptide 2 isoform X5
general transcription factor IIIC subunit 2, transcript variant X4
general transcription factor 3C polypeptide 2 isoform X4
solute carrier family 30 member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
probable proton-coupled zinc antiporter SLC30A3
uridine-cytidine kinase-like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DnaJ heat shock protein family (Hsp40) member C5 gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
DnaJ heat shock protein family (Hsp40) member C5 gamma
tripartite motif containing 54; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: tripartite motif-containing protein 54
urocortin; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial inner membrane protein MPV17; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial inner membrane protein MPV17, transcript variant X2
mitochondrial inner membrane protein MPV17, transcript variant X1
mitochondrial inner membrane protein MPV17, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase; Derived by automated computational analysis using gene prediction method: Gnomon.
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase, transcript variant X2
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase, transcript variant X1
all-trans retinoic acid induced differentiation factor; Derived by automated computational analysis using gene prediction method: Gnomon.
all-trans retinoic acid induced differentiation factor
all-trans retinoic acid-induced differentiation factor
solute carrier family 5 member 6; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium-dependent multivitamin transporter
prolactin regulatory element binding; Derived by automated computational analysis using gene prediction method: Gnomon.
prolactin regulatory element binding, transcript variant X1
prolactin regulatory element binding, transcript variant X2
prolactin regulatory element-binding protein isoform X1
prolactin regulatory element-binding protein isoform X2
cell growth regulator with EF-hand domain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
cell growth regulator with EF-hand domain 1
cell growth regulator with EF hand domain protein 1
ketohexokinase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
uncharacterized LOC128821163; Derived by automated computational analysis using gene prediction method: Gnomon.
elastin microfibril interfacer 1; Derived by automated computational analysis using gene prediction method: Gnomon.
elastin microfibril interfacer 1, transcript variant X2
elastin microfibril interfacer 1, transcript variant X1
oligosaccharyltransferase complex subunit 4, non-catalytic; Derived by automated computational analysis using gene prediction method: Gnomon.
oligosaccharyltransferase complex subunit 4, non-catalytic
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4
AGBL carboxypeptidase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
cytosolic carboxypeptidase-like protein 5
transmembrane protein 214; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transmembrane protein 214
microtubule-associated protein RP/EB family member 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated protein RP/EB family member 3-like
microtubule-associated protein RP/EB family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated protein RP/EB family member 3, transcript variant X4
microtubule-associated protein RP/EB family member 3, transcript variant X3
microtubule-associated protein RP/EB family member 3, transcript variant X1
microtubule-associated protein RP/EB family member 3, transcript variant X2
microtubule-associated protein RP/EB family member 3 isoform X2
microtubule-associated protein RP/EB family member 3 isoform X1
microtubule-associated protein RP/EB family member 3 isoform X3
uncharacterized LOC128821138; Derived by automated computational analysis using gene prediction method: Gnomon.
dihydropyrimidinase like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
dihydropyrimidinase like 5, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins
dihydropyrimidinase like 5, transcript variant X2
DNA methyltransferase 3 alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA methyltransferase 3 alpha, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
DNA methyltransferase 3 alpha, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
DNA methyltransferase 3 alpha, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
DNA methyltransferase 3 alpha, transcript variant X1
DNA (cytosine-5)-methyltransferase 3A isoform X2
DNA (cytosine-5)-methyltransferase 3A isoform X3
DNA (cytosine-5)-methyltransferase 3A isoform X1
DNA (cytosine-5)-methyltransferase 3A isoform X4
uncharacterized LOC128821139; Derived by automated computational analysis using gene prediction method: Gnomon.
dystrobrevin beta; Derived by automated computational analysis using gene prediction method: Gnomon.
dystrobrevin beta, transcript variant X6
dystrobrevin beta, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
dystrobrevin beta, transcript variant X2
dystrobrevin beta, transcript variant X5
dystrobrevin beta, transcript variant X3
dystrobrevin beta, transcript variant X1
dystrobrevin beta, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
dystrobrevin beta, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
dystrobrevin beta, transcript variant X10
dystrobrevin beta, transcript variant X8
ASXL transcriptional regulator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin family member 3C; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin family member 3C, transcript variant X2
kinesin family member 3C, transcript variant X1
uncharacterized LOC128821143; Derived by automated computational analysis using gene prediction method: Gnomon.
RAB10, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon.
GRB2 associated regulator of MAPK1 subtype 2; Derived by automated computational analysis using gene prediction method: Gnomon.
GRB2 associated regulator of MAPK1 subtype 2, transcript variant X2
GRB2-associated and regulator of MAPK protein 2 isoform X2
GRB2 associated regulator of MAPK1 subtype 2, transcript variant X1
GRB2 associated regulator of MAPK1 subtype 2, transcript variant X3
GRB2-associated and regulator of MAPK protein 2 isoform X1
GRB2-associated and regulator of MAPK protein 2 isoform X3
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
trifunctional enzyme subunit alpha, mitochondrial
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, transcript variant X5
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, transcript variant X2
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, transcript variant X1
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, transcript variant X4
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, transcript variant X3
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta, transcript variant X6
trifunctional enzyme subunit beta, mitochondrial
sterile alpha motif domain-containing protein 10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 10-like
interferon-induced very large GTPase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interferon-induced very large GTPase 1-like
selenoprotein I; Derived by automated computational analysis using gene prediction method: Gnomon.
ethanolaminephosphotransferase 1 isoform X1
ethanolaminephosphotransferase 1 isoform X2
otoferlin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins