Vidua macroura isolate BioBank_ID:100142 chromosome 34, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044093.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
cyclic AMP-dependent transcription factor ATF-7; Derived by automated computational analysis using gene prediction method: Gnomon.
cyclic AMP-dependent transcription factor ATF-7, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
cyclic AMP-dependent transcription factor ATF-7, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
cyclic AMP-dependent transcription factor ATF-7, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
cyclic AMP-dependent transcription factor ATF-7, transcript variant X4
cyclic AMP-dependent transcription factor ATF-7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
cyclic AMP-dependent transcription factor ATF-7 isoform X1
cyclic AMP-dependent transcription factor ATF-7 isoform X2
cyclic AMP-dependent transcription factor ATF-7 isoform X3
cyclic AMP-dependent transcription factor ATF-7 isoform X4
pro-FMRFamide-related neuropeptide FF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pro-FMRFamide-related neuropeptide FF-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
TARBP2 subunit of RISC loading complex; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 6 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: RISC-loading complex subunit TARBP2
mitogen-activated protein kinase kinase kinase 12; Derived by automated computational analysis using gene prediction method: Gnomon.
mitogen-activated protein kinase kinase kinase 12
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 12
poly(rC) binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
poly(rC) binding protein 2, transcript variant X8
poly(rC) binding protein 2, transcript variant X10
poly(rC) binding protein 2, transcript variant X9
poly(rC) binding protein 2, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
poly(rC) binding protein 2, transcript variant X6
poly(rC) binding protein 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
poly(rC) binding protein 2, transcript variant X4
poly(rC) binding protein 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
poly(rC) binding protein 2, transcript variant X2
poly(rC) binding protein 2, transcript variant X1
anti-Mullerian hormone receptor type 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: anti-Muellerian hormone type-2 receptor
Sp1 transcription factor; Derived by automated computational analysis using gene prediction method: Gnomon.
Sp1 transcription factor, transcript variant X1
Sp1 transcription factor, transcript variant X2
Sp1 transcription factor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Sp7 transcription factor; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
aladin WD repeat nucleoporin; Derived by automated computational analysis using gene prediction method: Gnomon.
aladin WD repeat nucleoporin, transcript variant X4
aladin WD repeat nucleoporin, transcript variant X2
aladin WD repeat nucleoporin, transcript variant X1
aladin WD repeat nucleoporin, transcript variant X3
cuticle collagen 40-like; Derived by automated computational analysis using gene prediction method: Gnomon.
MYG1 exonuclease; Derived by automated computational analysis using gene prediction method: Gnomon.
vitamin D receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 106C; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 106C, transcript variant X3
transmembrane protein 106C, transcript variant X5
transmembrane protein 106C, transcript variant X1
transmembrane protein 106C, transcript variant X4
transmembrane protein 106C, transcript variant X2
collagen alpha-1(II) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
SUMO specific peptidase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: sentrin-specific protease 1
phosphofructokinase, muscle; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphofructokinase, muscle, transcript variant X1
ATP-dependent 6-phosphofructokinase, muscle type isoform X1
phosphofructokinase, muscle, transcript variant X4
phosphofructokinase, muscle, transcript variant X3
ATP-dependent 6-phosphofructokinase, muscle type isoform X3
phosphofructokinase, muscle, transcript variant X2
ATP-dependent 6-phosphofructokinase, muscle type isoform X2
ATP-dependent 6-phosphofructokinase, muscle type isoform X4
ankyrin repeat and SOCS box containing 8; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat and SOCS box containing 8, transcript variant X1
ankyrin repeat and SOCS box containing 8, transcript variant X2
ankyrin repeat and SOCS box protein 8 isoform X2
ankyrin repeat and SOCS box protein 8 isoform X1
ring finger protein 212B; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 787-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 787-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
zinc finger protein 787-like, transcript variant X2
LIM domain and actin binding 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM domain and actin binding 1, transcript variant X2
LIM domain and actin binding 1, transcript variant X3
LIM domain and actin binding 1, transcript variant X1
LIM domain and actin binding 1, transcript variant X4
LIM domain and actin binding 1, transcript variant X5
LIM domain and actin binding 1, transcript variant X6
LIM domain and actin-binding protein 1 isoform X4
LIM domain and actin-binding protein 1 isoform X5
LIM domain and actin-binding protein 1 isoform X2
LIM domain and actin-binding protein 1 isoform X3
LIM domain and actin-binding protein 1 isoform X1
LIM domain and actin-binding protein 1 isoform X6
La ribonucleoprotein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
La ribonucleoprotein 4, transcript variant X3
La ribonucleoprotein 4, transcript variant X4
La ribonucleoprotein 4, transcript variant X1
La ribonucleoprotein 4, transcript variant X2
disco interacting protein 2 homolog B; Derived by automated computational analysis using gene prediction method: Gnomon.
disco interacting protein 2 homolog B, transcript variant X1
disco-interacting protein 2 homolog B isoform X1
disco interacting protein 2 homolog B, transcript variant X2
disco-interacting protein 2 homolog B isoform X2
activating transcription factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
activating transcription factor 1, transcript variant X1
activating transcription factor 1, transcript variant X2
activating transcription factor 1, transcript variant X3
cyclic AMP-dependent transcription factor ATF-1 isoform X1
cyclic AMP-dependent transcription factor ATF-1 isoform X2
transmembrane serine protease 12; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane serine protease 12, transcript variant X1
transmembrane serine protease 12, transcript variant X2
transmembrane protease serine 12 isoform X1
transmembrane protease serine 12 isoform X2
sodium voltage-gated channel alpha subunit 8; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium voltage-gated channel alpha subunit 8
thiol methyltransferase 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
putative methyltransferase-like protein 7A
sodium channel protein type 8 subunit alpha
transmembrane and death domain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane and death domain protein 1
fidgetin like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
extra spindle pole bodies like 1, separase; Derived by automated computational analysis using gene prediction method: Gnomon.
extra spindle pole bodies like 1, separase
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 6 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 6 bases in 5 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
prefoldin subunit 5; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: prefoldin subunit 5
complement C1q like 4; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
LOW QUALITY PROTEIN: complement C1q-like protein 4
DAZ associated protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
small cell adhesion glycoprotein; Derived by automated computational analysis using gene prediction method: Gnomon.
small cell adhesion glycoprotein, transcript variant X2
small cell adhesion glycoprotein, transcript variant X1
bridging integrator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
bridging integrator 2, transcript variant X2
bridging integrator 2, transcript variant X1
chymotrypsin-like elastase family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
chymotrypsin-like elastase family member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
polypeptide N-acetylgalactosaminyltransferase 6; Derived by automated computational analysis using gene prediction method: Gnomon.
polypeptide N-acetylgalactosaminyltransferase 6
solute carrier family 4 member 8; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 4 member 8, transcript variant X1
solute carrier family 4 member 8, transcript variant X2
electroneutral sodium bicarbonate exchanger 1 isoform X1
electroneutral sodium bicarbonate exchanger 1 isoform X2
pro-glucagon-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pro-glucagon-like, transcript variant X2
pro-glucagon-like, transcript variant X1
aquaporin 5; Derived by automated computational analysis using gene prediction method: Gnomon.
aquaporin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins
Fas apoptotic inhibitory molecule 2; Derived by automated computational analysis using gene prediction method: Gnomon.
BCDIN3 domain containing RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
BCDIN3 domain containing RNA methyltransferase, transcript variant X2
BCDIN3 domain containing RNA methyltransferase, transcript variant X1
keratin 80; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal cochleal; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 244 Proteins
keratin, type II cytoskeletal 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 155 Proteins
keratin, type II cytoskeletal 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 227 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 218 Proteins
uncharacterized PE-PGRS family protein PE_PGRS54-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized PE-PGRS family protein PE_PGRS54-like, transcript variant X2
uncharacterized PE-PGRS family protein PE_PGRS54-like, transcript variant X1
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X2
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X1
uncharacterized LOC128821064; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin, type II cytoskeletal 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 184 Proteins
keratin, type II cytoskeletal 6B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 111 Proteins
keratin, type II cytoskeletal 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821071; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin 8; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin 18; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 4B
tensin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
SPRY domain containing 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
major facilitator superfamily domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
major facilitator superfamily domain containing 5, transcript variant X1
major facilitator superfamily domain containing 5, transcript variant X2
retinoic acid receptor gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: retinoic acid receptor gamma
zinc finger protein 740; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 740, transcript variant X2
zinc finger protein 740, transcript variant X3
zinc finger protein 740, transcript variant X1
cysteine sulfinic acid decarboxylase; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine sulfinic acid decarboxylase, transcript variant X1
cysteine sulfinic acid decarboxylase, transcript variant X3
cysteine sulfinic acid decarboxylase, transcript variant X2
cysteine sulfinic acid decarboxylase isoform X1
cysteine sulfinic acid decarboxylase, transcript variant X4
cysteine sulfinic acid decarboxylase isoform X2
uncharacterized LOC128821074; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821056; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128821055; Derived by automated computational analysis using gene prediction method: Gnomon.