Vidua macroura isolate BioBank_ID:100142 chromosome 32, ASM2450914v1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044091.1.\nAssembly name: ASM2450914v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Missouri on\n2022/08/03. The original whole-genome shotgun project has the\naccession JAMGYM000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Missouri\nAssembly Date :: SEP-2021\nAssembly Method :: HiFasm v. SEPT-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 47.6x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_024509145.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
proline-rich protein HaeIII subfamily 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-rich protein HaeIII subfamily 1-like
Derived by automated computational analysis using gene prediction method: Gnomon.
POP7 homolog, ribonuclease P/MRP subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
POP7 homolog, ribonuclease P/MRP subunit
COORDINATES: polyA evidence [ECO:0006239]
actin like 6B; Derived by automated computational analysis using gene prediction method: Gnomon.
methylphosphate capping enzyme; Derived by automated computational analysis using gene prediction method: Gnomon.
7SK snRNA methylphosphate capping enzyme
actin nucleation-promoting factor WAS-like; Derived by automated computational analysis using gene prediction method: Gnomon.
actin nucleation-promoting factor WAS-like
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ArfGAP with FG repeats 2; Derived by automated computational analysis using gene prediction method: Gnomon.
arf-GAP domain and FG repeat-containing protein 2
leucine rich repeats and calponin homology domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeats and calponin homology domain containing 4
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 4 bases in 3 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: leucine-rich repeat and calponin homology domain-containing protein 4
procollagen C-endopeptidase enhancer; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: procollagen C-endopeptidase enhancer 1
kinesin family member 1C; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: kinesin-like protein KIF1C
calmodulin binding transcription activator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
calmodulin binding transcription activator 2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: calmodulin-binding transcription activator 2
sperm associated antigen 7; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
profilin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 25 member 11; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial 2-oxoglutarate/malate carrier protein
proteasome 20S subunit beta 6; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like
uncharacterized LOC128820870; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820870, transcript variant X2
uncharacterized LOC128820870, transcript variant X4
uncharacterized LOC128820870, transcript variant X3
uncharacterized protein LOC128820870 isoform X2
uncharacterized LOC128820870, transcript variant X1
uncharacterized protein LOC128820870 isoform X1
uncharacterized LOC128820872; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
serine/threonine-protein kinase pim-1-like, transcript variant X4
serine/threonine-protein kinase pim-1-like, transcript variant X3
serine/threonine-protein kinase pim-1-like, transcript variant X1
serine/threonine-protein kinase pim-1-like isoform X2
serine/threonine-protein kinase pim-1-like isoform X1
olfactory receptor 6M1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
uncharacterized LOC128820871; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820871, transcript variant X1
uncharacterized LOC128820871, transcript variant X2
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14A16-like, transcript variant X2
olfactory receptor 14A16-like, transcript variant X1
uncharacterized LOC128820918; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820919; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820889; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
uncharacterized LOC128820920; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins
maestro heat-like repeat family member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat family member 5
uncharacterized LOC128820913; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat-containing protein family member 9; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat-containing protein family member 9
uncharacterized LOC128820911; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820911, transcript variant X3
uncharacterized LOC128820911, transcript variant X2
uncharacterized LOC128820911, transcript variant X1
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized LOC128820924; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820915; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC128820927; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820929; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
uncharacterized LOC128820886; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase pim-1-like
uncharacterized LOC128820888; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820914; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat-containing protein family member 6; Derived by automated computational analysis using gene prediction method: Gnomon.
maestro heat-like repeat-containing protein family member 6
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820883; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14I1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain-containing protein 1-like
serine/threonine-protein kinase pim-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-2-like
zinc finger protein 391-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820908; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128820908, transcript variant X2
uncharacterized LOC128820908, transcript variant X1
uncharacterized LOC128820908, transcript variant X3
uncharacterized protein LOC128820908 isoform X2
uncharacterized protein LOC128820908 isoform X1
histone H3-like centromeric protein A; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: histone H3-like centromeric protein A
uncharacterized LOC128820940; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
uncharacterized LOC128820912; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleolar pre-ribosomal-associated protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X6
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X5
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X8
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X1
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X7
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X4
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X3
nucleolar pre-ribosomal-associated protein 1-like, transcript variant X2
nucleolar pre-ribosomal-associated protein 1-like isoform X1
nucleolar pre-ribosomal-associated protein 1-like isoform X3
nucleolar pre-ribosomal-associated protein 1-like isoform X2