Acinetobacter defluvii strain WCHA30 plasmid p4_010030, complete sequence.
type: Entry
definition: Acinetobacter defluvii strain WCHA30 plasmid p4_010030, complete sequence.
sequence version: NZ_CP029392.2
sequence date: 2022-11-30
sequence: sequence
division: CON
label: NZ_CP029392.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356262
keyword: RefSeq
source: Acinetobacter defluvii
organism: Acinetobacter defluvii
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP029392.2.\n\nOn Aug 26, 2019 this sequence version replaced NZ_CP029392.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:58:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,717\nCDSs (total) :: 3,614\nGenes (coding) :: 3,523\nCDSs (with protein) :: 3,523\nGenes (RNA) :: 103\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 4\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 36 of 91\nPseudo Genes (incomplete) :: 56 of 91\nPseudo Genes (internal stop) :: 29 of 91\nPseudo Genes (multiple problems) :: 24 of 91\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4761
topology: circular
so has quality: SO_0000988
location: 1..4761
location: region:1-4761:1
RO_0002162: 1871111

NZ_CP029392
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356262
type: BioSample
SIO_000068: biosample

1
title: The complete genome of Acinetobacter defluvii strain WCHAD010030
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Unpublished

2
title: Direct Submission
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (16-AUG-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
comments: Sequence update by submitter

3
title: Direct Submission
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (15-MAY-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

4
title: Direct Submission
author: Zong, Z.
journal: Submitted (06-JUL-2016) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4761:1
position: 4761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4761:1:source
so part of: sequence
organism: Acinetobacter defluvii
mol type: genomic DNA
strain: WCHA30
isolation source: sewage
type material: type strain of Acinetobacter defluvii
plasmid: p4_010030
country: China: Chengdu, Sichuan
collection date: 2015-10-31

1871111
type: Taxonomy
SIO_000068: taxonomy

DJ533_RS00555
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
gene: repM
locus tag: DJ533_RS00555
old locus tag: DJ533_00575
so part of: sequence
location: join(4506..4761,1..668)
location: region:1-4761:1
so has part: feature:4506-4761:1:exon
so has part: feature:1-668:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:4506-4761:1:exon

position:4506:1
position: 4506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-668:1:exon

position:668:1
position: 668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DJ533_RS00555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
gene: repM
locus tag: DJ533_RS00555
old locus tag: DJ533_00575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004734284.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKKELVVKDNALINASYNLDLSEQRLILLAILEARQSNTPNDKDLTIHAESYINHFNVHRNTAYKVLKDACKSLFDRRFSYQKLTQKGNIENVISRWVQRISYVENEALVRIKFSDDVVPLITNLEKHFTSYELEQVSSLTSVYAIRLYELLIAWRSTGKVTMVELEELRLKLGIEPNEYKRMGQFKEKVLHLAIDQINEYTDIKAEYEQHKRGRSIIGFSFKFKQKSQPKKLDSKRDPNTPDFFVKMTDAQRHLFANKMSEMPEMGKYSQGTESYQQFAIRIADMLLEPEKFRELYPILEKSGFQP
SIO_010081: DJ533_RS00555
subclass of: SO_0000673
so part of: DJ533_RS00555
location: join(4506..4761,1..668)
location: region:1-4761:1
so has part: feature:4506-4761:1:exon
so has part: feature:1-668:1:exon

WP_004856439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4506-4761:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-668:1:exon

DJ533_RS00560
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00560
old locus tag: DJ533_00570
so part of: sequence
location: 665..961
location: region:665-961:1
so has part: feature:665-961:1:exon
subclass of: SO_0000010

position:665:1
position: 665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:961:1
position: 961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665-961:1:exon

DJ533_RS00560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00560
old locus tag: DJ533_00570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856442.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKLNNLSTDLKHVTVEYLDIVNYEIARENICGYIFLLSRISKNAEPTKKMQMESKIQDLIYYRDNLQIEDKDNIQKVLNTLIPEYQAEQNNQTAKKN
SIO_010081: DJ533_RS00560
subclass of: SO_0000673
so part of: DJ533_RS00560
location: 665..961
location: region:665-961:1
so has part: feature:665-961:1:exon

WP_004856442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:665-961:1:exon

DJ533_RS00565
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00565
old locus tag: DJ533_00565
so part of: sequence
location: complement(958..1242)
location: region:958-1242:-1
so has part: feature:958-1242:-1:exon
subclass of: SO_0000010

position:958:-1
position: 958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1242:-1
position: 1242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:958-1242:-1:exon

DJ533_RS00565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00565
old locus tag: DJ533_00565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004871868.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKSAENIEKKIEAQLEKLKQLKAQKQAIDAREKTKQKEQERKDDTRRKILLGSYLIKKMQSNEANKEKILAELNEYLTENRDRQLFDLPDIEA
SIO_010081: DJ533_RS00565
subclass of: SO_0000673
so part of: DJ533_RS00565
location: complement(958..1242)
location: region:958-1242:-1
so has part: feature:958-1242:-1:exon

WP_004856445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:958-1242:-1:exon

DJ533_RS00570
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00570
old locus tag: DJ533_00560
so part of: sequence
location: 1458..2411
location: region:1458-2411:1
so has part: feature:1458-2411:1:exon
subclass of: SO_0000010

position:1458:1
position: 1458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2411:1
position: 2411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1458-2411:1:exon

DJ533_RS00570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00570
old locus tag: DJ533_00560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017284732.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIYHCTTKTVNRSSGRTAVASMAYRAGEKLTDERTGLTHDFTKKEGVVYTEILSNLDTELDRSKVWNLAEKSENRKDARTAREWVIALPDELDEEQRKELAREFAQSLVDRYGVVADLAIHAPSKGGDDKNHHAHILLTTRKAELDTENKLVLTQKSEIELSNTKRKSLGMGTSQEEIKQIRATWANLANHALEYAGYRERIDHRSYADQGNQLQATIHEGSKVTQMRRKGIDTEISRFNDTIKQQNSQQLQYKQQHKEQTLEQGFNRVEKGFEQWKKDQEAKRLELEHKKQLKLQQEQAMKLKQRKSMNRNGPSL
SIO_010081: DJ533_RS00570
subclass of: SO_0000673
so part of: DJ533_RS00570
location: 1458..2411
location: region:1458-2411:1
so has part: feature:1458-2411:1:exon

WP_065995589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1458-2411:1:exon

DJ533_RS00575
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00575
old locus tag: DJ533_00555
so part of: sequence
location: 2408..2878
location: region:2408-2878:1
so has part: feature:2408-2878:1:exon
subclass of: SO_0000010

position:2408:1
position: 2408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2878:1
position: 2878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2408-2878:1:exon

DJ533_RS00575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00575
old locus tag: DJ533_00555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004811700.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQNDLDDQLYILLASMKEYREAIADDNKRLETFYNKVASGVLEQSKKTLNNANQEATRALQGRIQELDKATDKLNYRFIALLCAIFLSLVLVFLSFIFLFIPSFDEIQQRRAEAAWLEQSYNLDIKNCNGRACVRIMKNDCHGTNKDYCVIDPK
SIO_010081: DJ533_RS00575
subclass of: SO_0000673
so part of: DJ533_RS00575
location: 2408..2878
location: region:2408-2878:1
so has part: feature:2408-2878:1:exon

WP_065995588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2408-2878:1:exon

DJ533_RS00585
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00585
old locus tag: DJ533_00580
so part of: sequence
location: 3371..3796
location: region:3371-3796:1
so has part: feature:3371-3796:1:exon
subclass of: SO_0000010

position:3371:1
position: 3371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3796:1
position: 3796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3371-3796:1:exon

DJ533_RS00585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00585
old locus tag: DJ533_00580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005108788.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6530 family protein
translation: MKKEIPTHLSHKPIVKLEGYSQFDGRFAGNTDAAGLSIGLAQWSDSENMDLSAKVWRYTGEKWSRQSEELPIHRVFDLASLLCASMSYAKNDTLPICDDFKIDLTKNSDLIDVLKGGMLKDQKHLDESLKRLSKYLKTLGY
SIO_010081: DJ533_RS00585
subclass of: SO_0000673
so part of: DJ533_RS00585
location: 3371..3796
location: region:3371-3796:1
so has part: feature:3371-3796:1:exon

WP_065995587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3371-3796:1:exon