Acinetobacter defluvii strain WCHA30 plasmid p3_010030, complete sequence.
type: Entry
definition: Acinetobacter defluvii strain WCHA30 plasmid p3_010030, complete sequence.
sequence version: NZ_CP029391.2
sequence date: 2022-11-30
sequence: sequence
division: CON
label: NZ_CP029391.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356262
keyword: RefSeq
source: Acinetobacter defluvii
organism: Acinetobacter defluvii
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP029391.2.\n\nOn Aug 26, 2019 this sequence version replaced NZ_CP029391.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:58:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,717\nCDSs (total) :: 3,614\nGenes (coding) :: 3,523\nCDSs (with protein) :: 3,523\nGenes (RNA) :: 103\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 4\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 36 of 91\nPseudo Genes (incomplete) :: 56 of 91\nPseudo Genes (internal stop) :: 29 of 91\nPseudo Genes (multiple problems) :: 24 of 91\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5017
topology: circular
so has quality: SO_0000988
location: 1..5017
location: region:1-5017:1
RO_0002162: 1871111

NZ_CP029391
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356262
type: BioSample
SIO_000068: biosample

1
title: The complete genome of Acinetobacter defluvii strain WCHAD010030
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Unpublished

2
title: Direct Submission
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (16-AUG-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
comments: Sequence update by submitter

3
title: Direct Submission
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (15-MAY-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

4
title: Direct Submission
author: Zong, Z.
journal: Submitted (06-JUL-2016) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5017:1
position: 5017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5017:1:source
so part of: sequence
organism: Acinetobacter defluvii
mol type: genomic DNA
strain: WCHA30
isolation source: sewage
type material: type strain of Acinetobacter defluvii
plasmid: p3_010030
country: China: Chengdu, Sichuan
collection date: 2015-10-31

1871111
type: Taxonomy
SIO_000068: taxonomy

DJ533_RS00520
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00520
old locus tag: DJ533_00545
so part of: sequence
location: join(4469..5017,1..9)
location: region:1-5017:1
so has part: feature:4469-5017:1:exon
so has part: feature:1-9:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:4469-5017:1:exon

position:4469:1
position: 4469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-9:1:exon

position:9:1
position: 9
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DJ533_RS00520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00520
old locus tag: DJ533_00545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005146114.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator
translation: MKEIRQQKKQPEVIRKRILEQATILVSQKGISGVSIQNIATAVGITKGGVFHHFPNKKNLIEEMFNQIILDLDQTVEYLIKRDPTEYGKFTRAYIHSSFIHQIDGVVSAWSALSMTMITEPTFNKIWMEWLKNRLSQHAETDSHPDLELLRLAADGLWLQSITGVIDDEQCSKLEDDLLNRTYLT
SIO_010081: DJ533_RS00520
subclass of: SO_0000673
so part of: DJ533_RS00520
location: join(4469..5017,1..9)
location: region:1-5017:1
so has part: feature:4469-5017:1:exon
so has part: feature:1-9:1:exon

WP_005146114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4469-5017:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-9:1:exon

DJ533_RS00525
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00525
old locus tag: DJ533_00540
so part of: sequence
location: complement(137..634)
location: region:137-634:-1
so has part: feature:137-634:-1:exon
subclass of: SO_0000010

position:137:-1
position: 137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:634:-1
position: 634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137-634:-1:exon

DJ533_RS00525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00525
old locus tag: DJ533_00540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004969149.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQNDLDDQLYILLASMKEYREAIADDKKRLEQFYNQVASGVLDKAEKSLENTNKKHTGALNNSIQALNEATNRLNLKLIFIFASTFVAVMMVFILAIFLYIPSKDEIDERRADMAVLKKYPLQIRESDGETLVRIMRKNCYSFEPSSVKEKTYDWCQIDPKKY
SIO_010081: DJ533_RS00525
subclass of: SO_0000673
so part of: DJ533_RS00525
location: complement(137..634)
location: region:137-634:-1
so has part: feature:137-634:-1:exon

WP_004856450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137-634:-1:exon

DJ533_RS00530
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00530
old locus tag: DJ533_00535
so part of: sequence
location: complement(631..1602)
location: region:631-1602:-1
so has part: feature:631-1602:-1:exon
subclass of: SO_0000010

position:631:-1
position: 631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1602:-1
position: 1602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631-1602:-1:exon

DJ533_RS00530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00530
old locus tag: DJ533_00535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005265044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIYHCSTKTVNRSSGRTAVASSAYRAGEKLEDERTGLTHDFTRKDGVAHAEILSNLDIEIDRGELWNLAEKTENRKDARTAREWVIALPDELDADQRKDLAKDFARSLVDRYDVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDADNKLTLATKTDIELSNAKRKSLGMGTTQDEIKQIRETWANLANHALERAGYREKIDHRSYADQNNGLQATIHEGTKVTQLRRQGIDTEISRFNDNVKQQNAQQLDQQKQQKESVLQRGLNRVDQGFDQWQKNQETKRLELERQAEMKRQQELDKQRAEQALRKAYQKLSRGGMSL
SIO_010081: DJ533_RS00530
subclass of: SO_0000673
so part of: DJ533_RS00530
location: complement(631..1602)
location: region:631-1602:-1
so has part: feature:631-1602:-1:exon

WP_065995591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:631-1602:-1:exon

DJ533_RS00535
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00535
old locus tag: DJ533_00530
so part of: sequence
location: 1811..2095
location: region:1811-2095:1
so has part: feature:1811-2095:1:exon
subclass of: SO_0000010

position:1811:1
position: 1811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2095:1
position: 2095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1811-2095:1:exon

DJ533_RS00535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00535
old locus tag: DJ533_00530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004871868.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKSAENIEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDDTRRKILLGSYLIKKMQANEANKEKILAELNEYLTENRDRQLFDLPDIEA
SIO_010081: DJ533_RS00535
subclass of: SO_0000673
so part of: DJ533_RS00535
location: 1811..2095
location: region:1811-2095:1
so has part: feature:1811-2095:1:exon

WP_004871868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1811-2095:1:exon

DJ533_RS00540
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00540
old locus tag: DJ533_00525
so part of: sequence
location: complement(2092..2388)
location: region:2092-2388:-1
so has part: feature:2092-2388:-1:exon
subclass of: SO_0000010

position:2092:-1
position: 2092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2388:-1
position: 2388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2092-2388:-1:exon

DJ533_RS00540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00540
old locus tag: DJ533_00525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856442.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKLNNLSTDLKHVTVEYLDIVNYEIARENICGYIFLLSRLSKNAKPTEKMQMESKIQDLIYYRDHLQIEDKDNIQKVLNTLIPEYQAEQNNQTAKKN
SIO_010081: DJ533_RS00540
subclass of: SO_0000673
so part of: DJ533_RS00540
location: complement(2092..2388)
location: region:2092-2388:-1
so has part: feature:2092-2388:-1:exon

WP_005265043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2092-2388:-1:exon

DJ533_RS00545
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
gene: repM
locus tag: DJ533_RS00545
old locus tag: DJ533_00520
so part of: sequence
location: complement(2385..3314)
location: region:2385-3314:-1
so has part: feature:2385-3314:-1:exon
subclass of: SO_0000010

position:2385:-1
position: 2385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3314:-1
position: 3314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2385-3314:-1:exon

DJ533_RS00545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
gene: repM
locus tag: DJ533_RS00545
old locus tag: DJ533_00520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004871874.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKNSLVVKDNALINASYNLELTEQRLIMLAIINARESGQGITADSKLEIHASDYAKLFNVSADASYKALREAVNNLFNRQFSYTAEYKKTGKVGIVRSRWVSRIFYVDDLALLEITFAPDVVPLITRLEEHFTKYEAKQVAHLTSKYATRLYELLIAWREVGKVPQLELSEFRNRLGLVDSEYTAMSDFKKRVLEPSIKQINEHTDITVTYEQHKKGRIISGFSFKFKQKQQPKVEAKRDPNTPDFFIKMTDAQRHLFANKMSEMPEMGKYSQGTESYQQFAIRIADMLLEPEKFRELYPILEKSGFQP
SIO_010081: DJ533_RS00545
subclass of: SO_0000673
so part of: DJ533_RS00545
location: complement(2385..3314)
location: region:2385-3314:-1
so has part: feature:2385-3314:-1:exon

WP_004871874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2385-3314:-1:exon

DJ533_RS00550
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00550
old locus tag: DJ533_00550
so part of: sequence
location: 4124..4468
location: region:4124-4468:1
so has part: feature:4124-4468:1:exon
subclass of: SO_0000010

position:4124:1
position: 4124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4468:1
position: 4468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4124-4468:1:exon

DJ533_RS00550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00550
old locus tag: DJ533_00550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005146112.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SMR family transporter
translation: MNSVLLAYVLLGFSIVSEVIGSSFLVKSEGFTKLFPSVMVFIFFSTAFYLLSQVIKTIPLGIAYAIWAGVGIVLTAVVSYFVFKQTLDNPALIGIGFIVSGVIIINLFSQSAGH
SIO_010081: DJ533_RS00550
subclass of: SO_0000673
so part of: DJ533_RS00550
location: 4124..4468
location: region:4124-4468:1
so has part: feature:4124-4468:1:exon

WP_005199344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4124-4468:1:exon