Acinetobacter defluvii strain WCHA30 plasmid p2_010030, complete sequence.
type: Entry
definition: Acinetobacter defluvii strain WCHA30 plasmid p2_010030, complete sequence.
sequence version: NZ_CP029390.2
sequence date: 2022-11-30
sequence: sequence
division: CON
label: NZ_CP029390.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05356262
keyword: RefSeq
source: Acinetobacter defluvii
organism: Acinetobacter defluvii
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP029390.2.\n\nOn Aug 26, 2019 this sequence version replaced NZ_CP029390.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:58:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,717\nCDSs (total) :: 3,614\nGenes (coding) :: 3,523\nCDSs (with protein) :: 3,523\nGenes (RNA) :: 103\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 4\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 36 of 91\nPseudo Genes (incomplete) :: 56 of 91\nPseudo Genes (internal stop) :: 29 of 91\nPseudo Genes (multiple problems) :: 24 of 91\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7173
topology: circular
so has quality: SO_0000988
location: 1..7173
location: region:1-7173:1
RO_0002162: 1871111

NZ_CP029390
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05356262
type: BioSample
SIO_000068: biosample

1
title: The complete genome of Acinetobacter defluvii strain WCHAD010030
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Unpublished

2
title: Direct Submission
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (16-AUG-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
comments: Sequence update by submitter

3
title: Direct Submission
author: Hu, Y.
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (15-MAY-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

4
title: Direct Submission
author: Zong, Z.
journal: Submitted (06-JUL-2016) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7173:1
position: 7173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7173:1:source
so part of: sequence
organism: Acinetobacter defluvii
mol type: genomic DNA
strain: WCHA30
isolation source: sewage
type material: type strain of Acinetobacter defluvii
plasmid: p2_010030
country: China: Chengdu, Sichuan
collection date: 2015-10-31

1871111
type: Taxonomy
SIO_000068: taxonomy

DJ533_RS00470
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00470
old locus tag: DJ533_00500
so part of: sequence
location: complement(175..495)
location: region:175-495:-1
so has part: feature:175-495:-1:exon
subclass of: SO_0000010

position:175:-1
position: 175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495:-1
position: 495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175-495:-1:exon

DJ533_RS00470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00470
old locus tag: DJ533_00500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFEVEQKFNEEMRQIYDKSKELTPPYKPTRFKKMLDQYGGIETANRLLISSSKIPDGFTELYSRGPEALKLTVEYLILKPEYSALFNPDQQEIAKKRLKQLNIELP
SIO_010081: DJ533_RS00470
subclass of: SO_0000673
so part of: DJ533_RS00470
location: complement(175..495)
location: region:175-495:-1
so has part: feature:175-495:-1:exon

WP_065995572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:175-495:-1:exon

DJ533_RS00475
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00475
old locus tag: DJ533_00505
so part of: sequence
location: complement(530..844)
location: region:530-844:-1
so has part: feature:530-844:-1:exon
subclass of: SO_0000010

position:530:-1
position: 530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:844:-1
position: 844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:530-844:-1:exon

DJ533_RS00475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00475
old locus tag: DJ533_00505
inference: COORDINATES: protein motif:HMM:NF013540.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MLPPRDSNDFHIALKQEREKKGLTNTELAEAIGINTVMIGRYEHTCHENYYSVPSQETWRKLNDYLSTGTRVNLKSSNSIEDLSVEDLIKELKNRGAKSINIEW
SIO_010081: DJ533_RS00475
subclass of: SO_0000673
so part of: DJ533_RS00475
location: complement(530..844)
location: region:530-844:-1
so has part: feature:530-844:-1:exon

WP_050049565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:530-844:-1:exon

DJ533_RS00480
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00480
old locus tag: DJ533_00510
so part of: sequence
location: complement(1133..1420)
location: region:1133-1420:-1
so has part: feature:1133-1420:-1:exon
subclass of: SO_0000010

position:1133:-1
position: 1133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1420:-1
position: 1420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1133-1420:-1:exon

DJ533_RS00480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00480
old locus tag: DJ533_00510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000857160.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTRAELDAMSHQELKDYEQILLALWTPRMAIESDIERLSTNRNELLEIFNQLKNPDAPENERLKNSILSLKYKIEDLEDKLDDLIQDNRLNRAD
SIO_010081: DJ533_RS00480
subclass of: SO_0000673
so part of: DJ533_RS00480
location: complement(1133..1420)
location: region:1133-1420:-1
so has part: feature:1133-1420:-1:exon

WP_000857160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1133-1420:-1:exon

DJ533_RS00485
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00485
old locus tag: DJ533_00515
so part of: sequence
location: complement(1417..2367)
location: region:1417-2367:-1
so has part: feature:1417-2367:-1:exon
subclass of: SO_0000010

position:1417:-1
position: 1417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2367:-1
position: 2367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1417-2367:-1:exon

DJ533_RS00485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00485
old locus tag: DJ533_00515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001031297.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNKENSYDKSYPVTTMAIQNKVTECFKSMSVDEKRILIMASPIARNVDASEQDQILISAQQFADDCGIKVNSAYKQIENASKKLVDRSFSYVNDRGKKVYSNWVIDATYEDAGISLRFTSIVLVMLKILDKYNPYTRYKKDVVLKLKKDYSIDFYHLAKKNQAKNGFELTLDEMFTEFGLPESYRDLRNLKRRVLKSSLDEINEFTDVTVDYSPVKKGRSVVGFKFTVKEKSKPKLIAPERDPKTIDMFCNLSDAQINKYSAILSKLSELSDLSNFQDYPSFALWISGILRDPKSVREETAKRIFKALHSKTDFKP
SIO_010081: DJ533_RS00485
subclass of: SO_0000673
so part of: DJ533_RS00485
location: complement(1417..2367)
location: region:1417-2367:-1
so has part: feature:1417-2367:-1:exon

WP_001031297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1417-2367:-1:exon

DJ533_RS00490
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00490
old locus tag: DJ533_00470
so part of: sequence
location: complement(3050..4702)
location: region:3050-4702:-1
so has part: feature:3050-4702:-1:exon
subclass of: SO_0000010

position:3050:-1
position: 3050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4702:-1
position: 4702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3050-4702:-1:exon

DJ533_RS00490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00490
old locus tag: DJ533_00470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005199240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIYHFSVKTISRGNGRSAVACAAYRSSEKLVCDFYGKEQDYTRKTGVEFTKIYAPENTNTELLKRQTLWNEVEKVERRKDALLAREFEIAFPSELNAEQRENMLNELCRNLVKKYGVIVDAAIHAPHTDSGSDERNYHAHIMFTTRSINEQGGFSAKKYRDFSRDNGTETVSHWRESFAELCNHHLEQNGFDERVDHRSYEDQESDLEATQHEGPQATYLRRRGIFTEISLKNDEIKLRNLKIKKVIALDENIKVSEDLVQKVRSELQFQYSQAEYSEKTSQKLYEFQNEELSKLTTKLDTMSSAISELRKKEPLFFKTKWINQINDLIDQHNTQLDIQKHISGLSEIEKKERYSDHLNKWTEENQLLQPKKSFAKFDEPNITVKQRKLNDQISNIDHQISEISRRETEYQEYVRDQRLEIINSYIFEEDNYGNKYFSPQNGEKQKRLYAEEMEDLKIQELHAAFTKKIETEAQQEFSQKRAIQLENDRKDRESREQQLRKEREQQEQRYAQEREQQEHLAFVRRQEQEKQQRNEPKKPENDNNHDYTP
SIO_010081: DJ533_RS00490
subclass of: SO_0000673
so part of: DJ533_RS00490
location: complement(3050..4702)
location: region:3050-4702:-1
so has part: feature:3050-4702:-1:exon

WP_004870770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3050-4702:-1:exon

DJ533_RS00495
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00495
old locus tag: DJ533_00475
so part of: sequence
location: 4914..5216
location: region:4914-5216:1
so has part: feature:4914-5216:1:exon
subclass of: SO_0000010

position:4914:1
position: 4914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5216:1
position: 5216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4914-5216:1:exon

DJ533_RS00495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00495
old locus tag: DJ533_00475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000110201.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVETLEQKIAKQEERLRQLKAQKQAIAAREKKKNSDRQRKDDTRRKILLGAWVLNKLKNDESFKGQLTDFEKFLSTESKTEENRQKDKDLFNGVIWNNT
SIO_010081: DJ533_RS00495
subclass of: SO_0000673
so part of: DJ533_RS00495
location: 4914..5216
location: region:4914-5216:1
so has part: feature:4914-5216:1:exon

WP_000110201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4914-5216:1:exon

DJ533_RS00500
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00500
old locus tag: DJ533_00480
so part of: sequence
location: complement(5278..5541)
location: region:5278-5541:-1
so has part: feature:5278-5541:-1:exon
subclass of: SO_0000010

position:5278:-1
position: 5278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5541:-1
position: 5541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5278-5541:-1:exon

DJ533_RS00500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00500
old locus tag: DJ533_00480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004674113.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MTNRNVEWTDNAWDEYIYWQTQDKKILKRINTLIKECQRTPFEGTGKPEPLKANLSGFWSRRIDEKHRLVYEVTDERISIIQCRFHY
SIO_010081: DJ533_RS00500
subclass of: SO_0000673
so part of: DJ533_RS00500
location: complement(5278..5541)
location: region:5278-5541:-1
so has part: feature:5278-5541:-1:exon

WP_000184943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5278-5541:-1:exon

DJ533_RS00505
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00505
old locus tag: DJ533_00485
so part of: sequence
location: complement(5528..5791)
location: region:5528-5791:-1
so has part: feature:5528-5791:-1:exon
subclass of: SO_0000010

position:5528:-1
position: 5528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5791:-1
position: 5791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5528-5791:-1:exon

DJ533_RS00505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00505
old locus tag: DJ533_00485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016658858.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MHVFTYTDARNNLKSVLDKVIDDVDVAFITRKEGGHAVVMGQDHYDSLMETLYLLSSPNNASRLNESIAQLRAGKTKHRELIEDDES
SIO_010081: DJ533_RS00505
subclass of: SO_0000673
so part of: DJ533_RS00505
location: complement(5528..5791)
location: region:5528-5791:-1
so has part: feature:5528-5791:-1:exon

WP_000557944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5528-5791:-1:exon

DJ533_RS00510
type: Gene
subclass of: SO_0000704
RO_0002162: 1871111
locus tag: DJ533_RS00510
old locus tag: DJ533_00490
so part of: sequence
location: complement(5927..6406)
location: region:5927-6406:-1
so has part: feature:5927-6406:-1:exon
subclass of: SO_0000010

position:5927:-1
position: 5927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6406:-1
position: 6406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6406:-1:exon

DJ533_RS00510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1871111
locus tag: DJ533_RS00510
old locus tag: DJ533_00490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009044823.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine hydrolase family protein
translation: MKPVLLIIDVQSTFNPPNWLIQKLEKLLPSVHSIATIELHDESIVPFKSQLNWAPSEFDECPLKVEKVFIKYGYSPTDDLIQYLKGLDTQQVYVCGIQTDTCVLAAGFRLFDAGLFPCLVTDLTVGSSLDRSGNLGIQLWKHHFRSITTSENLSSNTMI
SIO_010081: DJ533_RS00510
subclass of: SO_0000673
so part of: DJ533_RS00510
location: complement(5927..6406)
location: region:5927-6406:-1
so has part: feature:5927-6406:-1:exon

WP_065995571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6406:-1:exon