Acinetobacter defluvii strain WCHA30 plasmid p1_010030, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
The complete genome of Acinetobacter defluvii strain WCHAD010030
Submitted (16-AUG-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
Submitted (15-MAY-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
Submitted (06-JUL-2016) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP029389.2.\n\nOn Aug 26, 2019 this sequence version replaced NZ_CP029389.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:58:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,717\nCDSs (total) :: 3,614\nGenes (coding) :: 3,523\nCDSs (with protein) :: 3,523\nGenes (RNA) :: 103\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 78\nncRNAs :: 4\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 36 of 91\nPseudo Genes (incomplete) :: 56 of 91\nPseudo Genes (internal stop) :: 29 of 91\nPseudo Genes (multiple problems) :: 24 of 91\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004740580.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004740582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740583.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740584.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740594.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740414.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740422.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740423.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740424.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740429.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740434.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740435.1
COORDINATES: similar to AA sequence:RefSeq:WP_016048992.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740481.1
COORDINATES: similar to AA sequence:RefSeq:WP_000039018.1
COORDINATES: similar to AA sequence:RefSeq:WP_000991751.1
COORDINATES: protein motif:HMM:NF020354.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612141.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004646832.1
COORDINATES: protein motif:HMM:NF020952.2
COORDINATES: similar to AA sequence:RefSeq:WP_005029667.1
COORDINATES: similar to AA sequence:RefSeq:WP_004980538.1
COORDINATES: similar to AA sequence:RefSeq:WP_005026907.1
COORDINATES: similar to AA sequence:RefSeq:WP_005235463.1
COORDINATES: similar to AA sequence:RefSeq:WP_016145634.1
COORDINATES: similar to AA sequence:RefSeq:WP_016048989.1
COORDINATES: similar to AA sequence:RefSeq:WP_005237873.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000675631.1
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF016302.2
COORDINATES: similar to AA sequence:RefSeq:WP_004740518.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740524.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000109885.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740544.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740546.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740547.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF037921.2
COORDINATES: protein motif:HMM:NF037905.2
COORDINATES: similar to AA sequence:RefSeq:WP_004740577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004879069.1
COORDINATES: similar to AA sequence:RefSeq:WP_004740579.1