Jeotgalibaca porci strain CCUG 69148 plasmid p_unnamed1, complete sequence.
Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Jeotgalibaca.
Jeotgalibaca porci sp. nov. and Jeotgalibaca arthritidis sp. nov., isolated from pigs, and emended description of the genus Jeotgalibaca
Submitted (04-MAR-2020) Department of Biology, KyungHee University, 26-6 Kyungheedae-ro, Dongdaemun-gu, Seoul 02453, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP049890.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 345.41x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/01/2022 04:27:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,370\nCDSs (total) :: 2,268\nGenes (coding) :: 2,232\nCDSs (with protein) :: 2,232\nGenes (RNA) :: 102\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 9 of 36\nPseudo Genes (incomplete) :: 23 of 36\nPseudo Genes (internal stop) :: 5 of 36\nPseudo Genes (multiple problems) :: 1 of 36\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
Sau3AI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013711997.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611709.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element ISEnfa1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_018368564.1
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000933358.1
COORDINATES: similar to AA sequence:RefSeq:WP_018368562.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016897369.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002387760.1
COORDINATES: similar to AA sequence:RefSeq:WP_001808810.1
COORDINATES: similar to AA sequence:RefSeq:WP_064305258.1
COORDINATES: similar to AA sequence:RefSeq:WP_001971434.1
COORDINATES: similar to AA sequence:RefSeq:WP_002328088.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002316687.1
COORDINATES: similar to AA sequence:RefSeq:WP_002316685.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_002316684.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007723283.1
COORDINATES: similar to AA sequence:RefSeq:WP_002158794.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: similar to AA sequence:RefSeq:WP_019244445.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_009790636.1
SprT family zinc-dependent metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_011476548.1
COORDINATES: similar to AA sequence:RefSeq:WP_005876968.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017885.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003140885.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: protein motif:HMM:NF033608.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_003650127.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_007723195.1
CagC family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007723199.1
TrsD/TraD family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_003242312.1
COORDINATES: protein motif:HMM:NF021643.2
COORDINATES: protein motif:HMM:NF025081.2
COORDINATES: similar to AA sequence:RefSeq:WP_007723213.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000997693.1
COORDINATES: similar to AA sequence:RefSeq:WP_012779620.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
Vga family ABC-F type ribosomal protection protein
COORDINATES: protein motif:HMM:NF015935.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.