Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Phyllobacterium.
Does the Miocene-Pliocene relict legume Oxytropis triphylla form nitrogen-fixing nodules with a combination of bacterial strains?
Submitted (28-OCT-2016) Laboratory of Microbiological Monitoring and Bioremediation of Soils, Arriam, Podbelskogo Sh., 3, St. Petersburg, Pushkin 196608, Russian Federation
REFSEQ INFORMATION: The reference sequence is identical to\nCP017944.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP Assembly v. 3\nGenome Coverage :: 78x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 09:09:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,116\nCDSs (total) :: 6,050\nGenes (coding) :: 5,802\nCDSs (with protein) :: 5,802\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 248\nCDSs (without protein) :: 248\nPseudo Genes (ambiguous residues) :: 0 of 248\nPseudo Genes (frameshifted) :: 136 of 248\nPseudo Genes (incomplete) :: 166 of 248\nPseudo Genes (internal stop) :: 21 of 248\nPseudo Genes (multiple problems) :: 71 of 248\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Phyllobacterium zundukense
COORDINATES: similar to AA sequence:RefSeq:WP_013316410.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008124840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008124841.1
COORDINATES: similar to AA sequence:RefSeq:WP_007762795.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069617.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008124848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011221302.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650774.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018496486.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581248.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013896278.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013891389.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689825.1
COORDINATES: similar to AA sequence:RefSeq:WP_010912886.1
diphosphate--fructose-6-phosphate 1-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019861144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655123.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_013761869.1
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_015887345.1
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_011652272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068635.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017269434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012757754.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018099658.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: similar to AA sequence:RefSeq:WP_006330188.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877842.1
COORDINATES: similar to AA sequence:RefSeq:WP_006330197.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318889.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013896756.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015318886.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896754.1
COORDINATES: similar to AA sequence:RefSeq:WP_010912538.1
COORDINATES: protein motif:HMM:TIGR01470.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205930.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126556.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018209867.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126552.1
COORDINATES: similar to AA sequence:RefSeq:WP_019966567.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015414 - ABC-type nitrate transporter activity [Evidence IEA]
GO:0015706 - nitrate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013761944.1
CmpA/NrtA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332128.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097167.1
ANTAR domain-containing response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018097102.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008126001.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009924.1
COORDINATES: protein motif:HMM:NF013315.2
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189211.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003535752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827550.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015317629.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_019858391.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126320.1
COORDINATES: similar to AA sequence:RefSeq:WP_015317626.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019858395.1
COORDINATES: similar to AA sequence:RefSeq:WP_006203990.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004684894.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126190.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126188.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126186.1
COORDINATES: protein motif:HMM:NF021508.2
COORDINATES: similar to AA sequence:RefSeq:WP_008529729.1
nucleotidyltransferase and HEPN domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010973629.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003843713.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009452004.1
COORDINATES: similar to AA sequence:RefSeq:WP_008124825.1
COORDINATES: protein motif:HMM:NF015444.2
COORDINATES: similar to AA sequence:RefSeq:WP_004109058.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125999.1
COORDINATES: similar to AA sequence:RefSeq:WP_013529540.1
COORDINATES: similar to AA sequence:RefSeq:WP_018900636.1
COORDINATES: similar to AA sequence:RefSeq:WP_018074626.1
COORDINATES: similar to AA sequence:RefSeq:WP_014764870.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125991.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125990.1
COORDINATES: similar to AA sequence:RefSeq:WP_008834567.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093136.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761380.1
sn-glycerol-3-phosphate import ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_007630633.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008534844.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653859.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125981.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201086.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008125977.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010969979.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014329331.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019862501.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011653827.1
COORDINATES: similar to AA sequence:RefSeq:WP_019862503.1
COORDINATES: similar to AA sequence:RefSeq:WP_007607600.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095778.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709045.1
COORDINATES: similar to AA sequence:RefSeq:WP_007597378.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709043.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008125975.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125974.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125973.1
COORDINATES: similar to AA sequence:RefSeq:WP_019341711.1
COORDINATES: similar to AA sequence:RefSeq:WP_019862404.1
COORDINATES: similar to AA sequence:RefSeq:WP_008936608.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_008125967.1
COORDINATES: similar to AA sequence:RefSeq:WP_009451946.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009798421.1
COORDINATES: similar to AA sequence:RefSeq:WP_017962885.1
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014332393.1
COORDINATES: protein motif:HMM:NF017837.2
COORDINATES: similar to AA sequence:RefSeq:WP_014327615.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899002.1
COORDINATES: similar to AA sequence:RefSeq:WP_004121390.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010913543.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709025.1
GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA]
GO:0009102 - biotin biosynthetic process [Evidence IEA]
adenosylmethionine--8-amino-7-oxononanoate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_009762354.1
GO:0004141 - dethiobiotin synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012709027.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468288.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004076 - biotin synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02444.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758701.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332823.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024635.2
COORDINATES: similar to AA sequence:RefSeq:WP_008835227.1
COORDINATES: similar to AA sequence:RefSeq:WP_010976102.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007119.1
COORDINATES: similar to AA sequence:RefSeq:WP_003578795.1
GO:0008663 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009166 - nucleotide catabolic process [Evidence IEA]
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_007508436.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_007694915.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_011974880.1
COORDINATES: similar to AA sequence:RefSeq:WP_003608278.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325978.1
COORDINATES: similar to AA sequence:RefSeq:WP_010094994.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505573.1
COORDINATES: similar to AA sequence:RefSeq:WP_019646440.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012649236.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017276103.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018480529.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017967833.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010975346.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264338.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018858045.1
cupredoxin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015318420.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200500.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012706475.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003579945.1
COORDINATES: similar to AA sequence:RefSeq:WP_020050422.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
phosphoenolpyruvate-utilizing N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018242453.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242452.1
GO:0047324 - phosphoenolpyruvate-glycerone phosphotransferase activity [Evidence IEA]
dihydroxyacetone kinase phosphoryl donor subunit DhaM
COORDINATES: similar to AA sequence:RefSeq:WP_014330601.1
COORDINATES: similar to AA sequence:RefSeq:WP_003593911.1
COORDINATES: similar to AA sequence:RefSeq:WP_018242449.1
COORDINATES: similar to AA sequence:RefSeq:WP_003540646.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480876.1
COORDINATES: similar to AA sequence:RefSeq:WP_018074535.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480874.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855614.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972720.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896989.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896801.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526861.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210212.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967209.1
COORDINATES: similar to AA sequence:RefSeq:WP_018012284.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562927.1
PotD/PotF family extracellular solute-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010967207.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856671.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019858518.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004224797.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909854.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_008876057.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858521.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482293.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493390.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909858.1
COORDINATES: similar to AA sequence:RefSeq:WP_020185151.1
COORDINATES: protein motif:HMM:NF024503.2
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126415.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126413.1
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]; GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996849.1
COORDINATES: similar to AA sequence:RefSeq:WP_018429482.1
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008126408.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126403.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126402.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126400.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126397.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873985.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659533.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328173.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007789192.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007873029.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404661.1
COORDINATES: similar to AA sequence:RefSeq:WP_017989458.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126380.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126378.1
COORDINATES: similar to AA sequence:RefSeq:WP_003510665.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008126376.1
COORDINATES: similar to AA sequence:RefSeq:WP_013653009.1
GO:0019867 - outer membrane [Evidence IEA]
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
COORDINATES: similar to AA sequence:RefSeq:WP_010658820.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468891.1
ChuX/HutX family heme-like substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013531242.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126370.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836832.1
heme ABC transporter ATP-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_002713496.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_002713497.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008126366.1
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126358.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126355.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126354.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972952.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551328.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126017.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126019.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013532316.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014766045.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006332370.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006332371.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018099354.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896076.1
COORDINATES: similar to AA sequence:RefSeq:WP_009041600.1
COORDINATES: similar to AA sequence:RefSeq:WP_007899567.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008126349.1
GO:0016787 - hydrolase activity [Evidence IEA]
ligase-associated DNA damage response endonuclease PdeM
COORDINATES: similar to AA sequence:RefSeq:WP_008126348.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
ligase-associated DNA damage response DEXH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_008126346.1
ligase-associated DNA damage response exonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_008126345.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
cisplatin damage response ATP-dependent DNA ligase
COORDINATES: similar to AA sequence:RefSeq:WP_012051014.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237353.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003529067.1
oligopeptide ABC transporter permease OppB
COORDINATES: similar to AA sequence:RefSeq:WP_010975715.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237350.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915766.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010915934.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914959.1
COORDINATES: similar to AA sequence:RefSeq:WP_006330863.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126265.1
COORDINATES: similar to AA sequence:RefSeq:WP_018094081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898261.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120962.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008126273.1
D-lyxose/D-mannose family sugar isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_008126276.1
nucleoside/nucleotide kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018330045.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205380.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126287.1
GO:0008671 - 2-dehydro-3-deoxygalactonokinase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126289.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_002965195.1
COORDINATES: similar to AA sequence:RefSeq:WP_003598253.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172320.1
COORDINATES: similar to AA sequence:RefSeq:WP_013850792.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264720.1
COORDINATES: similar to AA sequence:RefSeq:WP_018012048.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479536.1
COORDINATES: similar to AA sequence:RefSeq:WP_008124833.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008124834.1
COORDINATES: protein motif:HMM:NF012706.2