Tai Forest ebolavirus isolate Tai Forest virus/H.sapiens-tc/CIV/1994/Pauleoula-CI, complete genome.
type: Entry
definition: Tai Forest ebolavirus isolate Tai Forest virus/H.sapiens-tc/CIV/1994/Pauleoula-CI, complete genome.
sequence version: NC_014372.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_014372.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Tai Forest ebolavirus
organism: Tai Forest ebolavirus
taxonomy: Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Filoviridae; Ebolavirus.
reference: 1
references: 19023410
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to FJ217162.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 18935
topology: linear
so has quality: SO_0000987
location: 1..18935
location: region:1-18935:1
RO_0002162: 186541

NC_014372
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Newly Discovered Ebola Virus Associated with Hemorrhagic Fever Outbreak in Uganda
author: Towner, J.S.
author: Sealy, T.K.
author: Khristova, M.L.
author: Albarino, C.G.
author: Conlan, S.
author: Reeder, S.A.
author: Quan, P.L.
author: Lipkin, W.I.
author: Downing, R.
author: Tappero, J.W.
author: Okware, S.
author: Lutwama, J.
author: Bakamutumaho, B.
author: Kayiwa, J.
author: Comer, J.A.
author: Rollin, P.E.
author: Ksiazek, T.G.
author: Nichol, S.T.
journal: PLoS Pathog. 4 (11), E1000212 (2008)
pubmed: 19023410

19023410
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (05-AUG-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Towner, J.S.
author: Sealy, T.K.
author: Khristova, M.L.
author: Albarino, C.G.
author: Conlan, S.
author: Reeder, S.A.
author: Quan, P.L.
author: Lipkin, W.I.
author: Downing, R.
author: Tappero, J.W.
author: Okware, S.
author: Lutwama, J.
author: Bakamutumaho, B.
author: Kayiwa, J.T.
author: Comer, J.A.
author: Rollin, P.E.
author: Ksiazek, T.G.
author: Nichol, S.T.
journal: Submitted (17-SEP-2008) Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30333, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18935:1
position: 18935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18935:1:source
so part of: sequence
organism: Tai Forest ebolavirus
mol type: viral cRNA
isolate: Tai Forest virus/H.sapiens-tc/CIV/1994/Pauleoula-CI
host: Homo sapiens
country: Cote d'Ivoire
collection date: Nov-1994
note: Ivory Coast ebolavirus

186541
type: Taxonomy
SIO_000068: taxonomy

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 186541
note: putative leader region
function: regulation or initiation of RNA replication
so part of: sequence
location: 1..55
location: region:1-55:1
so has part: feature:1-55:1:region

position:55:1
position: 55
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-55:1:region

CIEBOVp1
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: NP
locus tag: CIEBOVp1
so part of: sequence
location: 56..3020
location: region:56-3020:1
so has part: feature:56-3020:1:exon
subclass of: SO_0000010

9487539
type: Gene
SIO_000068: ncbigene

position:56:1
position: 56
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3020:1
position: 3020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56-3020:1:exon

CIEBOVp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: NP
locus tag: CIEBOVp1
product: nucleoprotein
SIO_010081: CIEBOVp1
subclass of: SO_0000673
so part of: CIEBOVp1
location: 56..3020
location: region:56-3020:1
so has part: feature:56-3020:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56-3020:1:exon

CIEBOVp1
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: NP
locus tag: CIEBOVp1
note: putative transcription start signal
SIO_010081: CIEBOVp1
subclass of: SO_0000673
so part of: CIEBOVp1
location: 56..67
location: region:56-67:1
so has part: feature:56-67:1:exon

position:67:1
position: 67
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56-67:1:exon

CIEBOVp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: NP
locus tag: CIEBOVp1
function: encapsidation of genomic RNA
codon start: 1
product: nucleoprotein
translation: MESRAHKAWMTHTASGFETDYHKILTAGLSVQQGIVRQRVIQVHQVTNLEEICQLIIQAFEAGVDFQESADSFLLMLCLHHAYQGDYKQFLESNAVKYLEGHGFRFEVRKKEGVKRLEELLPAASSGKSIRRTLAAMPEEETTEANAGQFLSFASLFLPKLVVGEKACLEKVQRQIQVHSEQGLIQYPTAWQSVGHMMVIFRLMRTNFLIKFLLIHQGMHMVAGHDANDAVIANSVAQARFSGLLIVKTVLDHILQKTEHGVRLHPLARTAKVKNEVNSFKAALSSLAQHGEYAPFARLLNLSGVNNLEHGLFPQLSAIALGVATAHGSTLAGVNVGEQYQQLREAATEAEKQLQKYAESRELDHLGLDDQEKKILKDFHQKKNEISFQQTTAMVTLRKERLAKLTEAITSTSLLKTGKQYDDDNDIPFPGPINDNENSEQQDDDPTDSQDTTIPDIIVDPDDGRYNNYGDYPSETANAPEDLVLFDLEDGDEDDHRPSSSSENNNKHSLTGTDSNKTSNWNRNPTNMPKKDSTQNNDNPAQRAQEYARDNIQDTPTPHRALTPISEETGSNGHNEDDIDSIPPLESDEENNTETTITTTKNTTAPPAPVYRSNSEKEPLPQEKSQKQPNQVSGSENTDNKPHSEQSVEEMYRHILQTQGPFDAILYYYMMTEEPIVFSTSDGKEYVYPDSLEGEHPPWLSEKEALNEDNRFITMDDQQFYWPVMNHRNKFMAILQHHK
SIO_010081: CIEBOVp1
subclass of: SO_0000673
so part of: CIEBOVp1
location: 464..2683
location: region:464-2683:1
so has part: feature:464-2683:1:exon

YP_003815423.1
type: Protein
SIO_000068: ncbiprotein

position:464:1
position: 464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2683:1
position: 2683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464-2683:1:exon

CIEBOVp1
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: NP
locus tag: CIEBOVp1
note: putative
SIO_010081: CIEBOVp1
subclass of: SO_0000673
so part of: CIEBOVp1
location: 3009..3020
location: region:3009-3020:1
so has part: feature:3009-3020:1:exon

position:3009:1
position: 3009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3009-3020:1:exon

CIEBOVp2
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: VP35
locus tag: CIEBOVp2
so part of: sequence
location: 3026..4395
location: region:3026-4395:1
so has part: feature:3026-4395:1:exon
subclass of: SO_0000010

9487533
type: Gene
SIO_000068: ncbigene

position:3026:1
position: 3026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4395:1
position: 4395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3026-4395:1:exon

CIEBOVp2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: VP35
locus tag: CIEBOVp2
product: VP35
SIO_010081: CIEBOVp2
subclass of: SO_0000673
so part of: CIEBOVp2
location: 3026..4395
location: region:3026-4395:1
so has part: feature:3026-4395:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3026-4395:1:exon

CIEBOVp2
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: VP35
locus tag: CIEBOVp2
note: putative transcription start signal
SIO_010081: CIEBOVp2
subclass of: SO_0000673
so part of: CIEBOVp2
location: 3026..3037
location: region:3026-3037:1
so has part: feature:3026-3037:1:exon

position:3037:1
position: 3037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3026-3037:1:exon

CIEBOVp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: VP35
locus tag: CIEBOVp2
function: RNA-dependent RNA polymerase cofactor
note: putative type-1 IFN antagonist
codon start: 1
product: polymerase complex protein
translation: MISTRAAAINDPSLPIRNQCTRGPELSGWISEQLMTGKIPVHEIFNDTEPHISSGSDCLPRPKNTAPRTRNTQTQTDPVCNHNFEDVTQALTSLTNVIQKQALNLESLEQRIIDLENGLKPMYDMAKVISALNRSCAEMVAKYDLLVMTTGRATATAAATEAYWEEHGQPPPGPSLYEESAIRGKINKQEDKVPKEVQEAFRNLDSTSSLTEENFGKPDISAKDLRDIMYDHLPGFGTAFHQLVQVICKLGKDNSALDIIHAEFQASLAEGDSPQCALIQITKRIPIFQDATPPTIHIRSRGDIPRACQKSLRPVPPSPKIDRGWVCIFQLQDGKTLGLKI
SIO_010081: CIEBOVp2
subclass of: SO_0000673
so part of: CIEBOVp2
location: 3114..4139
location: region:3114-4139:1
so has part: feature:3114-4139:1:exon

YP_003815424.1
type: Protein
SIO_000068: ncbiprotein

position:3114:1
position: 3114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4139:1
position: 4139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3114-4139:1:exon

CIEBOVp3
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: VP40
locus tag: CIEBOVp3
so part of: sequence
location: 4378..5881
location: region:4378-5881:1
so has part: feature:4378-5881:1:exon
subclass of: SO_0000010

9487534
type: Gene
SIO_000068: ncbigene

position:4378:1
position: 4378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5881:1
position: 5881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4378-5881:1:exon

CIEBOVp3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: VP40
locus tag: CIEBOVp3
product: VP40
SIO_010081: CIEBOVp3
subclass of: SO_0000673
so part of: CIEBOVp3
location: 4378..5881
location: region:4378-5881:1
so has part: feature:4378-5881:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4378-5881:1:exon

CIEBOVp3
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: VP40
locus tag: CIEBOVp3
note: putative transcription start signal
SIO_010081: CIEBOVp3
subclass of: SO_0000673
so part of: CIEBOVp3
location: 4378..4389
location: region:4378-4389:1
so has part: feature:4378-4389:1:exon

position:4389:1
position: 4389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4378-4389:1:exon

CIEBOVp2
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: VP35
locus tag: CIEBOVp2
note: putative
SIO_010081: CIEBOVp2
subclass of: SO_0000673
so part of: CIEBOVp2
location: 4385..4395
location: region:4385-4395:1
so has part: feature:4385-4395:1:exon

position:4385:1
position: 4385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4385-4395:1:exon

CIEBOVp3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: VP40
locus tag: CIEBOVp3
function: coalesce nucleocapsids and cell membranes in virion assembly (budding)
codon start: 1
product: matrix protein
translation: MRRIILPTAPPEYMEAVYPMRTMNSGADNTASGPNYTTTGVMTNDTPSNSLRPVADDNIDHPSHTPNSVASAFILEAMVNVISGPKVLMKQIPIWLPLGVSDQKTYSFDSTTAAIMLASYTITHFGKTSNPLVRINRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAATWTDETPAVSTGTLRPGISFHPKLRPILLPGRAGKKGSNSDLTSPDKIQAIMNFLQDLKIVPIDPTKNIMGIEVPELLVHRLTGKKTTTKNGQPIIPILLPKYIGLDPLSQGDLTMVITQDCDSCHSPASLPPVNEK
SIO_010081: CIEBOVp3
subclass of: SO_0000673
so part of: CIEBOVp3
location: 4467..5447
location: region:4467-5447:1
so has part: feature:4467-5447:1:exon

YP_003815425.1
type: Protein
SIO_000068: ncbiprotein

position:4467:1
position: 4467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5447:1
position: 5447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4467-5447:1:exon

CIEBOVp3
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: VP40
locus tag: CIEBOVp3
note: putative
SIO_010081: CIEBOVp3
subclass of: SO_0000673
so part of: CIEBOVp3
location: 5871..5881
location: region:5871-5881:1
so has part: feature:5871-5881:1:exon

position:5871:1
position: 5871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5871-5881:1:exon

CIEBOVp4
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
so part of: sequence
location: 5888..8293
location: region:5888-8293:1
so has part: feature:5888-8293:1:exon
subclass of: SO_0000010

9487535
type: Gene
SIO_000068: ncbigene

position:5888:1
position: 5888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8293:1
position: 8293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5888-8293:1:exon

CIEBOVp4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
product: sGP
note: unedited mRNA
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 5888..8293
location: region:5888-8293:1
so has part: feature:5888-8293:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5888-8293:1:exon

CIEBOVp4
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: GP
locus tag: CIEBOVp4
note: putative transcription start signal
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 5888..5899
location: region:5888-5899:1
so has part: feature:5888-5899:1:exon

position:5899:1
position: 5899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5888-5899:1:exon

CIEBOVp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
function: receptor binding and fusion
exception: RNA editing
note: GP1,2; structural glycoprotein; cleaved by furin into subunits GP1 and GP2 to yield a heterodimer linked by a disulfide bond
codon start: 1
product: spike glycoprotein
translation: MGASGILQLPRERFRKTSFFVWVIILFHKVFSIPLGVVHNNTLQVSDIDKFVCRDKLSSTSQLKSVGLNLEGNGVATDVPTATKRWGFRAGVPPKVVNCEAGEWAENCYNLAIKKVDGSECLPEAPEGVRDFPRCRYVHKVSGTGPCPGGLAFHKEGAFFLYDRLASTIIYRGTTFAEGVIAFLILPKARKDFFQSPPLHEPANMTTDPSSYYHTTTINYVVDNFGTNTTEFLFQVDHLTYVQLEARFTPQFLVLLNETIYSDNRRSNTTGKLIWKINPTVDTSMGEWAFWENKKNFTKTLSSEELSFVPVPETQNQVLDTTATVSPPISAHNHAAEDHKELVSEDSTPVVQMQNIKGKDTMPTTVTGVPTTTPSPFPINARNTDHTKSFIGLEGPQEDHSTTQPAKTTSQPTNSTESTTLNPTSEPSSRGTGPSSPTVPNTTESHAELGKTTPTTLPEQHTAASAIPRAVHPDELSGPGFLTNTIRGVTNLLTGSRRKRRDVTPNTQPKCNPNLHYWTALDEGAAIGLAWIPYFGPAAEGIYTEGIMENQNGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPQDWTKNITDKIDQIIHDFVDNNLPNQNDGSNWWTGWKQWVPAGIGITGVIIAIIALLCICKFML
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: join(6027..6911,6911..8056)
location: region:6027-8056:1
so has part: feature:6027-6911:1:exon
so has part: feature:6911-8056:1:exon

YP_003815426.1
type: Protein
SIO_000068: ncbiprotein

position:6027:1
position: 6027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8056:1
position: 8056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6027-6911:1:exon

position:6911:1
position: 6911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6911-8056:1:exon

CIEBOVp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
note: soluble secreted glycoprotein; small non-structural secreted glycoprotein; sGP
codon start: 1
product: small secreted glycoprotein
translation: MGASGILQLPRERFRKTSFFVWVIILFHKVFSIPLGVVHNNTLQVSDIDKFVCRDKLSSTSQLKSVGLNLEGNGVATDVPTATKRWGFRAGVPPKVVNCEAGEWAENCYNLAIKKVDGSECLPEAPEGVRDFPRCRYVHKVSGTGPCPGGLAFHKEGAFFLYDRLASTIIYRGTTFAEGVIAFLILPKARKDFFQSPPLHEPANMTTDPSSYYHTTTINYVVDNFGTNTTEFLFQVDHLTYVQLEARFTPQFLVLLNETIYSDNRRSNTTGKLIWKINPTVDTSMGEWAFWENKKTSQKPFQVKSCLSYLYQKPRTRSLTRQRRSLLPSPPTTTQPKTTKNWFQRIPLQWFRCKTSRERTQCQPQ
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 6027..7124
location: region:6027-7124:1
so has part: feature:6027-7124:1:exon

YP_003815427.1
type: Protein
SIO_000068: ncbiprotein

position:7124:1
position: 7124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6027-7124:1:exon

CIEBOVp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
exception: RNA editing
note: ssGP; second non-structural secreted glycoprotein; secreted in a monomeric form; one A residue is deleted or two additional A residues are inserted at the editing site during transcription of the GP gene
codon start: 1
product: second secreted glycoprotein
translation: MGASGILQLPRERFRKTSFFVWVIILFHKVFSIPLGVVHNNTLQVSDIDKFVCRDKLSSTSQLKSVGLNLEGNGVATDVPTATKRWGFRAGVPPKVVNCEAGEWAENCYNLAIKKVDGSECLPEAPEGVRDFPRCRYVHKVSGTGPCPGGLAFHKEGAFFLYDRLASTIIYRGTTFAEGVIAFLILPKARKDFFQSPPLHEPANMTTDPSSYYHTTTINYVVDNFGTNTTEFLFQVDHLTYVQLEARFTPQFLVLLNETIYSDNRRSNTTGKLIWKINPTVDTSMGEWAFWENKKLHKNPFK
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: join(6027..6911,6913..6936)
location: region:6027-6936:1
so has part: feature:6027-6911:1:exon
so has part: feature:6913-6936:1:exon

YP_003815428.1
type: Protein
SIO_000068: ncbiprotein

position:6936:1
position: 6936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6027-6911:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6913-6936:1:exon

position:6913:1
position: 6913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CIEBOVp4
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
note: additional A residues are inserted or deleted during transcription by the viral polymerase; transcriptional editing site
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 6906..6912
location: region:6906-6912:1
so has part: feature:6906-6912:1:exon

position:6906:1
position: 6906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6912:1
position: 6912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6906-6912:1:exon

CIEBOVp4
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
note: immunosuppressive motif in structural glycoprotein
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 7781..7858
location: region:7781-7858:1
so has part: feature:7781-7858:1:exon

position:7781:1
position: 7781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7858:1
position: 7858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7781-7858:1:exon

CIEBOVp4
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 186541
gene: GP
locus tag: CIEBOVp4
note: transmembrane anchor present in structural glycoprotein
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 7976..8041
location: region:7976-8041:1
so has part: feature:7976-8041:1:exon

position:7976:1
position: 7976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8041:1
position: 8041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7976-8041:1:exon

CIEBOVp5
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: VP30
locus tag: CIEBOVp5
so part of: sequence
location: 8276..9733
location: region:8276-9733:1
so has part: feature:8276-9733:1:exon
subclass of: SO_0000010

9487536
type: Gene
SIO_000068: ncbigene

position:8276:1
position: 8276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9733:1
position: 9733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8276-9733:1:exon

CIEBOVp5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: VP30
locus tag: CIEBOVp5
product: VP30
SIO_010081: CIEBOVp5
subclass of: SO_0000673
so part of: CIEBOVp5
location: 8276..9733
location: region:8276-9733:1
so has part: feature:8276-9733:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8276-9733:1:exon

CIEBOVp5
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: VP30
locus tag: CIEBOVp5
note: putative transcription start signal
SIO_010081: CIEBOVp5
subclass of: SO_0000673
so part of: CIEBOVp5
location: 8276..8287
location: region:8276-8287:1
so has part: feature:8276-8287:1:exon

position:8287:1
position: 8287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8276-8287:1:exon

CIEBOVp4
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: GP
locus tag: CIEBOVp4
note: putative
SIO_010081: CIEBOVp4
subclass of: SO_0000673
so part of: CIEBOVp4
location: 8283..8293
location: region:8283-8293:1
so has part: feature:8283-8293:1:exon

position:8283:1
position: 8283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8283-8293:1:exon

CIEBOVp5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: VP30
locus tag: CIEBOVp5
note: polymerase complex protein
codon start: 1
product: minor nucleoprotein
translation: MEVVHERGRSRISRQNTRDGPSHLVRARSSSRASYRSEYHTPRSASQIRVPTVFHRKKTDLLTVPPAPKDVCPTLKKGFLCDSNFCKKDHQLESLTDRELLLLIARKTCGSTEQQLSIVAPKDSRLANPIAEDFQQKDGPKVTLSMLIETAEYWSKQDIKNIDDSRLRALLTLCAVMTRKFSKSQLSLLCESHLRREGLGQDQSESVLEVYQRLHSDKGGNFEAALWQQWDRQSLIMFITAFLNIALQLPCESSSVVISGLRMLIPQSEATEVVTPSETCTWSEGGSSH
SIO_010081: CIEBOVp5
subclass of: SO_0000673
so part of: CIEBOVp5
location: 8503..9372
location: region:8503-9372:1
so has part: feature:8503-9372:1:exon

YP_003815429.1
type: Protein
SIO_000068: ncbiprotein

position:8503:1
position: 8503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9372:1
position: 9372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8503-9372:1:exon

CIEBOVp5
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: VP30
locus tag: CIEBOVp5
note: putative
SIO_010081: CIEBOVp5
subclass of: SO_0000673
so part of: CIEBOVp5
location: 9723..9733
location: region:9723-9733:1
so has part: feature:9723-9733:1:exon

position:9723:1
position: 9723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9723-9733:1:exon

CIEBOVp6
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: VP24
locus tag: CIEBOVp6
so part of: sequence
location: 9873..11503
location: region:9873-11503:1
so has part: feature:9873-11503:1:exon
subclass of: SO_0000010

9487537
type: Gene
SIO_000068: ncbigene

position:9873:1
position: 9873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11503:1
position: 11503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9873-11503:1:exon

CIEBOVp6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: VP24
locus tag: CIEBOVp6
product: VP24
SIO_010081: CIEBOVp6
subclass of: SO_0000673
so part of: CIEBOVp6
location: 9873..11503
location: region:9873-11503:1
so has part: feature:9873-11503:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9873-11503:1:exon

CIEBOVp6
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: VP24
locus tag: CIEBOVp6
note: putative transcription start signal
SIO_010081: CIEBOVp6
subclass of: SO_0000673
so part of: CIEBOVp6
location: 9873..9884
location: region:9873-9884:1
so has part: feature:9873-9884:1:exon

position:9884:1
position: 9884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9873-9884:1:exon

CIEBOVp6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: VP24
locus tag: CIEBOVp6
codon start: 1
product: membrane-associated protein
translation: MAKATGRYNLISPKKDLEKGLVLNDLCTLSVAQTVQGWKVTWAGIEFDVTQKGMALLHRLKTSDFAPAWSMTRNLFPHLFQNPNSTIESPLWALRVILAAGIQDQLIDQSLIEPLAGALGLIADWLLTTGTNHFQMRTQQAKEQLSLKMLSLVRSNILKFINQLDALHVVNYNGLLSSIEIGTKSHTIIITRTNMGFLVELQEPDKSAMNTRKPGPVKFSLLHESTLKTLAKKPATQMQALILEFNSSLAI
SIO_010081: CIEBOVp6
subclass of: SO_0000673
so part of: CIEBOVp6
location: 10339..11094
location: region:10339-11094:1
so has part: feature:10339-11094:1:exon

YP_003815430.1
type: Protein
SIO_000068: ncbiprotein

position:10339:1
position: 10339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11094:1
position: 11094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10339-11094:1:exon

CIEBOVp7
type: Gene
subclass of: SO_0000704
RO_0002162: 186541
gene: L
locus tag: CIEBOVp7
so part of: sequence
location: 11486..18461
location: region:11486-18461:1
so has part: feature:11486-18461:1:exon
subclass of: SO_0000010

9487538
type: Gene
SIO_000068: ncbigene

position:11486:1
position: 11486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18461:1
position: 18461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11486-18461:1:exon

CIEBOVp7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186541
gene: L
locus tag: CIEBOVp7
product: polymerase
SIO_010081: CIEBOVp7
subclass of: SO_0000673
so part of: CIEBOVp7
location: 11486..18461
location: region:11486-18461:1
so has part: feature:11486-18461:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11486-18461:1:exon

CIEBOVp7
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: other
gene: L
locus tag: CIEBOVp7
note: putative transcription start signal
SIO_010081: CIEBOVp7
subclass of: SO_0000673
so part of: CIEBOVp7
location: 11486..11497
location: region:11486-11497:1
so has part: feature:11486-11497:1:exon

position:11497:1
position: 11497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11486-11497:1:exon

CIEBOVp6
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: VP24
locus tag: CIEBOVp6
note: putative
SIO_010081: CIEBOVp6
subclass of: SO_0000673
so part of: CIEBOVp6
location: 11493..11503
location: region:11493-11503:1
so has part: feature:11493-11503:1:exon

position:11493:1
position: 11493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11493-11503:1:exon

CIEBOVp7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186541
gene: L
locus tag: CIEBOVp7
note: synthesis of viral RNAs; transcriptional RNA editing
codon start: 1
product: RNA-dependent RNA polymerase
translation: MATQHTQYPDARLSSPIVLDQCDLVTRACGLYSAYSLNPQLKNCRLPKHIYRLKYDTTVTEFLSDVPVATLPADFLVPTFLRTLSGNGSCPIDPKCSQFLEEIVNYTLQDIRFLNYYLNRAGVHNDHVDRDFGQKIRNLICDNEVLHQMFHWYDLAILARRGRLNRGNNRSTWFASDNLVDILGYGDYIFWKIPLSLLPVDTQGLPHAAKDWYHESVFKEAIQGHTHIVSISTADVLIMCKDIITCRFNTLLIAAVANLEDSVHSDYPLPETVSDLYKAGDYLISLLGSEGYKVIKFLEPLCLAKIQLCSNYTERKGRFLTQMHLAVNHTLEELTGSRELRPQQIRKVREFHQMLINLKATPQQLCELFSVQKHWGHPVLHSEKAIQKVKKHATVIKALRPIIIFETYCVFKYSIAKHYFDSQGTWYSVTSDRCLTPGLSSYIKRNQFPPLPMIKELLWEFYHLDHPPLFSTKVISDLSIFIKDRATAVEKTCWDAVFEPNVLGYNPPNKFATKRVPEQFLEQENFSIESVLHYAQRLEYLLPEYRNFSFSLKEKELNIGRAFGKLPYPTRNVQTLCEALLADGLAKAFPSNMMVVTEREQKESLLHQASWHHTSDDFGENATVRGSSFVTDLEKYNLAFRYEFTAPFIEYCNRCYGVRNLFNWMHYTIPQCYIHVSDYYNPPHGVSLENRENPPEGPSSYRGHLGGIEGLQQKLWTSISCAQISLVEIKTGFKLRSAVMGDNQCITVLSVFPLETESSEQELSSEDNAARVAASLAKVTSACGIFLKPDETFVHSGFIYFGKKQYLNGVQLPQSLKTATRIAPLSDAIFDDLQGTLASIGTAFERSISETRHVVPCRVAAAFHTFFSVRILQYHHLGFNKGTDLGQLSLSKPLDFGTITLALAVPQVLGGLSFLNPEKCFYRNLGDPVTSGLFQLKTYLQMIHMDDLFLPLIAKNPGNCSAIDFVLNPSGLNVPGSQDLTSFLRQIVRRTITLSAKNKLINTLFHSSADLEDEMVCKWLLSSTPVMSRFAADIFSRTPSGKRLQILGYLEGTRTLLASKIINHNTETPILDRLRKITLQRWSLWFSYLDHCDQVLADALTQITCTVDLAQILREYTWAHILEGRQLIGATLPCILEQLNVIWLKPYEHCPKCAKSANPKGEPFVSIAIKKHVVSAWPDQSRLSWTIGDGIPYIGSRTEDKIGQPAIKPKCPSAALREAIELTSRLTWVTQGGANSDLLVKPFIEARVNLSVQEILQMTPSHYSGNIVHRYNDQYSPHSFMANRMSNSATRLVVSTNTLGEFSGGGQSARDSNIIFQNVINFAVALFDLRFRNVATSSIQHHRAHLHLSKCCTREVPAQYLVYTSTLPLDLTRYRDNELIYDDNPLRGGLNCNLSFDNPLFKGQRLNIIEEDLIRLPYLSGWELAKTVIQSIISDSNNSSTDPISSGETRSFTTHFLTYPKIGLLYSFGALISYYLGNTIIRTKKLTLNNFIYYLATQIHNLPHRSLRILKPTLKHASVISRLISIDSHFSIYIGGTAGDRGLSDAARLFLRTAITVFLQFVRKWIVERKTAIPLWVIYPLEGQSPSPINSFLHHVIALLQHESSHDHVCAAEAHSRVETFDNLVYMCKSTASNFFHASLAYWRSRSKNQDKREMTKILSLTQTEKKNSFGYTAHPESTAVLGSLQTSLAPPPSADEATYDRKNKVLKASRPGKYSQNTTKAPPNQTSCRDVSPNITGTDGCPSANEGSNSNNNNLVSHRIVLPFFTLSHNYNERPSIRKSEGTTEIVRLTRQLRAIPDTTIYCRFTGIVSSMHYKLDEVLWEFDNFKSAITLAEGEGSGALLLLQKYKVETLFFNTLATEHSIEAEIISGITTPRMLLPIMSRFHGGQIKVTLNNSASQITDITNPSWLADQKSRIPKQVEIITMDAETTENINRSKLYEAVQQLIVSHIDPNALKVVVLKVFLSDIDGILWLNDNLTPLFGLGYLIKPITSSPKSSEW…
SIO_010081: CIEBOVp7
subclass of: SO_0000673
so part of: CIEBOVp7
location: 11566..18198
location: region:11566-18198:1
so has part: feature:11566-18198:1:exon

YP_003815431.1
type: Protein
SIO_000068: ncbiprotein

position:11566:1
position: 11566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18198:1
position: 18198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11566-18198:1:exon

CIEBOVp7
type: Feature
subclass of: SO_0000001
RO_0002162: 186541
regulatory class: polyA_signal_sequence
gene: L
locus tag: CIEBOVp7
note: putative
SIO_010081: CIEBOVp7
subclass of: SO_0000673
so part of: CIEBOVp7
location: 18451..18461
location: region:18451-18461:1
so has part: feature:18451-18461:1:exon

position:18451:1
position: 18451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18451-18461:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 186541
note: trailer region
function: regulation or initiation of RNA replication
so part of: sequence
location: 18462..18935
location: region:18462-18935:1
so has part: feature:18462-18935:1:region

position:18462:1
position: 18462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18462-18935:1:region