Sudan ebolavirus isolate Sudan virus/H.sapiens-tc/UGA/2000/Gulu-808892, complete genome.
type: Entry
definition: Sudan ebolavirus isolate Sudan virus/H.sapiens-tc/UGA/2000/Gulu-808892, complete genome.
sequence version: NC_006432.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_006432.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Sudan ebolavirus
organism: Sudan ebolavirus
taxonomy: Viruses; ssRNA viruses; ssRNA negative-strand viruses; Mononegavirales; Filoviridae; Ebolavirus.
reference: 1
references: 16139097
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AY729654.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 18875
topology: linear
so has quality: SO_0000987
location: 1..18875
location: region:1-18875:1
RO_0002162: 186540

NC_006432
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Complete genome sequence of an Ebola virus (Sudan species) responsible for a 2000 outbreak of human disease in Uganda
author: Sanchez, A.
author: Rollin, P.E.
journal: Virus Res.
volume: 113
issue: 1
pages: 16-25
year: 2005
pubmed: 16139097

16139097
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (15-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Sanchez, A.
journal: Submitted (20-AUG-2004) National Center for Infectious Diseases, Division of Viral and Rickettsial Diseases, Special Pathogens Branch, Centers for Disease Control & Prevention, 1600 Clifton Road N.E., Building 15, Room SB611, Mail-Stop G-14, Atlanta, GA 30333, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18875:1
position: 18875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18875:1:source
so part of: sequence
organism: Sudan ebolavirus
mol type: viral cRNA
isolate: Sudan virus/H.sapiens-tc/UGA/2000/Gulu-808892
isolation source: human
country: Uganda
note: isolated in 2000

186540
type: Taxonomy
SIO_000068: taxonomy

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 186540
note: leader region
function: regulation of initiation of RNA replication
so part of: sequence
location: 1..55
location: region:1-55:1
so has part: feature:1-55:1:region

position:55:1
position: 55
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-55:1:region

SEVgp1
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: NP
locus tag: SEVgp1
experiment: experimental evidence, no additional details recorded
so part of: sequence
location: 56..3007
location: region:56-3007:1
so has part: feature:56-3007:1:exon
subclass of: SO_0000010

3160777
type: Gene
SIO_000068: ncbigene

position:56:1
position: 56
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3007:1
position: 3007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56-3007:1:exon

SEVgp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: NP
locus tag: SEVgp1
product: nucleoprotein
SIO_010081: SEVgp1
subclass of: SO_0000673
so part of: SEVgp1
location: 56..3007
location: region:56-3007:1
so has part: feature:56-3007:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56-3007:1:exon

SEVgp1
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: other
gene: NP
locus tag: SEVgp1
note: predicted transcription start site
SIO_010081: SEVgp1
subclass of: SO_0000673
so part of: SEVgp1
location: 56..67
location: region:56-67:1
so has part: feature:56-67:1:exon

position:67:1
position: 67
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56-67:1:exon

SEVgp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: NP
locus tag: SEVgp1
function: encapsidation of genomic RNA
note: predominant component of nucleocapsid
codon start: 1
product: nucleoprotein
translation: MDKRVRGSWALGGQSEVDLDYHKILTAGLSVQQGIVRQRVIPVYVVSDLEGICQHIIQAFEAGVDFQDNADSFLLLLCLHHAYQGDHRLFLKSDAVQYLEGHGFRFEVREKENVHRLDELLPNVTGGKNLRRTLAAMPEEETTEANAGQFLSFASLFLPKLVVGEKACLEKVQRQIQVHAEQGLIQYPTSWQSVGHMMVIFRLMRTNFLIKFLLIHQGMHMVAGHDANDTVISNSVAQARFSGLLIVKTVLDHILQKTDLGVRLHPLARTAKVKNEVSSFKAALGSLAKHGEYAPFARLLNLSGVNNLEHGLYPQLSAIALGVATAHGSTLAGVNVGEQYQQLREAATEAEKQLQQYAETRELDNLGLDEQEKKILMSFHQKKNEISFQQTNAMVTLRKERLAKLTEAITTASKIKVGDRYPDDNDIPFPGPIYDETHPNPSDDNPDDSRDTTIPGGVVDPYDDESNNYPDYEDSAEGTTGDLDLFNLDDDDDDSQPGPPDRGQSKERAARTHGLQDPTLDGAKKVPELTPGSHQPGNLHITKPGSNTNQPQGNMSSTLQSMTPIQEESEPDDQKDDDDESLTSLDSEGDEDVESVSGENNPTVAPPAPVYKDTGVDTNQQNGPSNAVDGQGSESEALPINPEKGSALEETYYHLLKTQGPFEAINYYHLMSDEPIAFSTESGKEYIFPDSLEEAYPPWLSEKEALEKENRYLVIDGQQFLWPVMSLQDKFLAVLQHD
SIO_010081: SEVgp1
subclass of: SO_0000673
so part of: SEVgp1
location: 458..2674
location: region:458-2674:1
so has part: feature:458-2674:1:exon

YP_138520.1
type: Protein
SIO_000068: ncbiprotein

position:458:1
position: 458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2674:1
position: 2674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458-2674:1:exon

SEVgp1
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: NP
locus tag: SEVgp1
SIO_010081: SEVgp1
subclass of: SO_0000673
so part of: SEVgp1
location: 2496..3007
location: region:2496-3007:1
so has part: feature:2496-3007:1:exon

position:2496:1
position: 2496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2496-3007:1:exon

SEVgp2
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: VP35
locus tag: SEVgp2
so part of: sequence
location: 3013..4382
location: region:3013-4382:1
so has part: feature:3013-4382:1:exon
subclass of: SO_0000010

3160776
type: Gene
SIO_000068: ncbigene

position:3013:1
position: 3013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4382:1
position: 4382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3013-4382:1:exon

SEVgp2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: VP35
locus tag: SEVgp2
product: VP35
SIO_010081: SEVgp2
subclass of: SO_0000673
so part of: SEVgp2
location: 3013..4382
location: region:3013-4382:1
so has part: feature:3013-4382:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3013-4382:1:exon

SEVgp2
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: other
gene: VP35
locus tag: SEVgp2
note: predicted transcription start site
SIO_010081: SEVgp2
subclass of: SO_0000673
so part of: SEVgp2
location: 3013..3024
location: region:3013-3024:1
so has part: feature:3013-3024:1:exon

position:3024:1
position: 3024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3013-3024:1:exon

SEVgp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: VP35
locus tag: SEVgp2
note: RNA-dependent RNA polymerase cofactor; cofactor in polymerase complex; type I IFN antagonist
codon start: 1
product: polymerase complex protein
translation: MQQDRTYRHHGPEVSGWFSEQLMTGKIPLTEVFVDVENKPSPAPITIISKNPKTTRKSDKQVQTDDASSLLTEEVKAAINSVISAVRRQTNAIESLEGRVTTLEASLKPVQDMAKTISSLNRSCAEMVAKYDLLVMTTGRATATAAATEAYWNEHGQAPPGPSLYEDDAIKAKLKDPNGKVPESVKQAYINLDSTSALNEENFGRPYISAKDLKEIIYDHLPGFGTAFHQLVQVICKIGKDNNILDIIHAEFQASLAEGDSPQCALIQITKRIPAFQDASPPIVHIKSRGDIPKACQKSLRPVPPSPKIDRGWVCIFQFQDGKALGLKI
SIO_010081: SEVgp2
subclass of: SO_0000673
so part of: SEVgp2
location: 3138..4127
location: region:3138-4127:1
so has part: feature:3138-4127:1:exon

YP_138521.1
type: Protein
SIO_000068: ncbiprotein

position:3138:1
position: 3138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4127:1
position: 4127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3138-4127:1:exon

SEVgp3
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: VP40
locus tag: SEVgp3
so part of: sequence
location: 4365..5875
location: region:4365-5875:1
so has part: feature:4365-5875:1:exon
subclass of: SO_0000010

3160775
type: Gene
SIO_000068: ncbigene

position:4365:1
position: 4365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5875:1
position: 5875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4365-5875:1:exon

SEVgp3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: VP40
locus tag: SEVgp3
product: VP40
SIO_010081: SEVgp3
subclass of: SO_0000673
so part of: SEVgp3
location: 4365..5875
location: region:4365-5875:1
so has part: feature:4365-5875:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4365-5875:1:exon

SEVgp3
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: other
gene: VP40
locus tag: SEVgp3
note: predicted transcription start site
SIO_010081: SEVgp3
subclass of: SO_0000673
so part of: SEVgp3
location: 4365..4376
location: region:4365-4376:1
so has part: feature:4365-4376:1:exon

position:4376:1
position: 4376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4365-4376:1:exon

SEVgp2
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: VP35
locus tag: SEVgp2
SIO_010081: SEVgp2
subclass of: SO_0000673
so part of: SEVgp2
location: 4372..4382
location: region:4372-4382:1
so has part: feature:4372-4382:1:exon

position:4372:1
position: 4372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4372-4382:1:exon

SEVgp3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: VP40
locus tag: SEVgp3
function: coalesce nucleocapsids and cell membranes in virion assembly (budding)
note: most abundant protein in virion
codon start: 1
product: matrix protein
translation: MRRVTVPTAPPAYADIGYPMSMLPIKSSRAVSGIQQKQEVLPGMDTPSNSMRPVADDNIDHTSHTPNGVASAFILEATVNVISGPKVLMKQIPIWLPLGIADQKTYSFDSTTAAIMLASYTITHFGKANNPLVRVNRLGQGIPDHPLRLLRMGNQAFLQEFVLPPVQLPQYFTFDLTALKLVTQPLPAATWTDETPSNLSGALRPGLSFHPKLRPVLLPGKTGKKGHVSDLTAPDKIQTIVNLMQDFKIVPIDPAKSIIGIEVPELLVHKLTGKKMSQKNGQPIIPVLLPKYIGLDPISPGDLTMVITPDYDDCHSPASCSYLSEK
SIO_010081: SEVgp3
subclass of: SO_0000673
so part of: SEVgp3
location: 4454..5434
location: region:4454-5434:1
so has part: feature:4454-5434:1:exon

YP_138522.1
type: Protein
SIO_000068: ncbiprotein

position:4454:1
position: 4454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5434:1
position: 5434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454-5434:1:exon

SEVgp3
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: VP40
locus tag: SEVgp3
SIO_010081: SEVgp3
subclass of: SO_0000673
so part of: SEVgp3
location: 5864..5875
location: region:5864-5875:1
so has part: feature:5864-5875:1:exon

position:5864:1
position: 5864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5864-5875:1:exon

SEVgp4
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: GP
locus tag: SEVgp4
so part of: sequence
location: 5883..8241
location: region:5883-8241:1
so has part: feature:5883-8241:1:exon
subclass of: SO_0000010

3160774
type: Gene
SIO_000068: ncbigene

position:5883:1
position: 5883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8241:1
position: 8241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5883-8241:1:exon

SEVgp4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: GP
locus tag: SEVgp4
product: sGP
note: unedited mRNA
SIO_010081: SEVgp4
subclass of: SO_0000673
so part of: SEVgp4
location: 5883..8241
location: region:5883-8241:1
so has part: feature:5883-8241:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5883-8241:1:exon

SEVgp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: GP
locus tag: SEVgp4
exception: RNA editing
note: structural glycoprotein; processed by furin to yield GP1-GP2 heterodimer that forms membrane-anchored trimers (peplomers)
codon start: 1
product: spike glycoprotein
translation: MGGLSLLQLPRDKFRKSSFFVWVIILFQKAFSMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKETFLQSPPIREAVNYTENTSSYYATSYLEYEIENFGAQHSTTLFKIDNNTFVRLDRPHTPQFLFQLNDTIHLHQQLSNTTGRLIWTLDANINADIGEWAFWENKKNLSEQLRGEELSFEALSLNETEDDDAASSRITKGRISDRATRKYSDLVPKNSPGMVPLHIPEGETTLPSQNSTEGRRVGVNTQETITETAATIIGTNGNHMQISTIGIRPSSSQIPSSSPTTAPSPEAQTPTTHTSGPSVMATEEPTTPPGSSPGPTTEAPTLTTPENITTAVKTVLPQESTSNGLITSTVTGILGSLGLRKRSRRQTNTKATGKCNPNLHYWTAQEQHNAAGIAWIPYFGPGAEGIYTEGLMHNQNALVCGLRQLANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWGGTCRILGPDCCIEPHDWTKNITDKINQIIHDFIDNPLPNQDNDDNWWTGWRQWIPAGIGITGIIIAIIALLCVCKLLC
SIO_010081: SEVgp4
subclass of: SO_0000673
so part of: SEVgp4
location: join(5998..6882,6882..8027)
location: region:5998-8027:1
so has part: feature:5998-6882:1:exon
so has part: feature:6882-8027:1:exon

YP_138523.1
type: Protein
SIO_000068: ncbiprotein

position:5998:1
position: 5998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8027:1
position: 8027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5998-6882:1:exon

position:6882:1
position: 6882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6882-8027:1:exon

SEVgp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: GP
locus tag: SEVgp4
note: small non-structural secreted glycoprotein; forms dimers linked by disulfide bonds (parallel orientation); processed by furin to yield sGP and delta peptide; sGP
codon start: 1
product: small secreted glycoprotein
translation: MGGLSLLQLPRDKFRKSSFFVWVIILFQKAFSMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKETFLQSPPIREAVNYTENTSSYYATSYLEYEIENFGAQHSTTLFKIDNNTFVRLDRPHTPQFLFQLNDTIHLHQQLSNTTGRLIWTLDANINADIGEWAFWENKKISPNNYVEKSCLSKLYRSTRQKTMMRHRRELQREESPTGPPGSIRTWFQRIPLGWFHCTYQKGKQHCRLRIRQKVEE
SIO_010081: SEVgp4
subclass of: SO_0000673
so part of: SEVgp4
location: 5998..7116
location: region:5998-7116:1
so has part: feature:5998-7116:1:exon

YP_138524.1
type: Protein
SIO_000068: ncbiprotein

position:7116:1
position: 7116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5998-7116:1:exon

SEVgp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: GP
locus tag: SEVgp4
exception: RNA editing
note: ssGP; second non-structural secreted glycoprotein; super small secreted glycoprotein; secreted in a monomeric form; one A residue is deleted or two additional A residues are inserted at the editing site during transcription of the GP gene
codon start: 1
product: second secreted glycoprotein
translation: MGGLSLLQLPRDKFRKSSFFVWVIILFQKAFSMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKETFLQSPPIREAVNYTENTSSYYATSYLEYEIENFGAQHSTTLFKIDNNTFVRLDRPHTPQFLFQLNDTIHLHQQLSNTTGRLIWTLDANINADIGEWAFWENKKSLRTTTWRRAVFRSFIAQRDRRR
SIO_010081: SEVgp4
subclass of: SO_0000673
so part of: SEVgp4
location: join(5998..6881,6883..6955)
location: region:5998-6955:1
so has part: feature:5998-6881:1:exon
so has part: feature:6883-6955:1:exon

YP_009246341.1
type: Protein
SIO_000068: ncbiprotein

position:6955:1
position: 6955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5998-6881:1:exon

position:6881:1
position: 6881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6883-6955:1:exon

position:6883:1
position: 6883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SEVgp4
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 186540
gene: GP
locus tag: SEVgp4
note: transcription editing site; polymerase slippage of 1 nucleotide (-1 direction) during transcription results in the addition of an extra adenosine and the translation of an altenate frame leading to expression of GP
SIO_010081: SEVgp4
subclass of: SO_0000673
so part of: SEVgp4
location: 6877..6883
location: region:6877-6883:1
so has part: feature:6877-6883:1:exon

position:6877:1
position: 6877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6877-6883:1:exon

SEVgp5
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: VP30
locus tag: SEVgp5
so part of: sequence
location: 8224..9697
location: region:8224-9697:1
so has part: feature:8224-9697:1:exon
subclass of: SO_0000010

3160773
type: Gene
SIO_000068: ncbigene

position:8224:1
position: 8224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9697:1
position: 9697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8224-9697:1:exon

SEVgp5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: VP30
locus tag: SEVgp5
product: VP30
SIO_010081: SEVgp5
subclass of: SO_0000673
so part of: SEVgp5
location: 8224..9697
location: region:8224-9697:1
so has part: feature:8224-9697:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8224-9697:1:exon

SEVgp5
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: other
gene: VP30
locus tag: SEVgp5
note: predicted transcription start site
SIO_010081: SEVgp5
subclass of: SO_0000673
so part of: SEVgp5
location: 8224..8235
location: region:8224-8235:1
so has part: feature:8224-8235:1:exon

position:8235:1
position: 8235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8224-8235:1:exon

SEVgp4
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: GP
locus tag: SEVgp4
SIO_010081: SEVgp4
subclass of: SO_0000673
so part of: SEVgp4
location: 8231..8241
location: region:8231-8241:1
so has part: feature:8231-8241:1:exon

position:8231:1
position: 8231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8231-8241:1:exon

SEVgp5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: VP30
locus tag: SEVgp5
function: encapsidation of genomic RNA
codon start: 1
product: minor nucleoprotein
translation: MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRVPTVFHKKGTGTLTVPPAPKDVCPTLRKGFLCDSNFCKKDHQLESLTDRELLLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVETAEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLGQDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLSCESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTT
SIO_010081: SEVgp5
subclass of: SO_0000673
so part of: SEVgp5
location: 8441..9307
location: region:8441-9307:1
so has part: feature:8441-9307:1:exon

YP_138525.1
type: Protein
SIO_000068: ncbiprotein

position:8441:1
position: 8441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9307:1
position: 9307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8441-9307:1:exon

SEVgp5
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: VP30
locus tag: SEVgp5
SIO_010081: SEVgp5
subclass of: SO_0000673
so part of: SEVgp5
location: 9686..9697
location: region:9686-9697:1
so has part: feature:9686-9697:1:exon

position:9686:1
position: 9686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9686-9697:1:exon

SEVgp6
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: VP24
locus tag: SEVgp6
so part of: sequence
location: 9826..11474
location: region:9826-11474:1
so has part: feature:9826-11474:1:exon
subclass of: SO_0000010

3160772
type: Gene
SIO_000068: ncbigene

position:9826:1
position: 9826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11474:1
position: 11474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9826-11474:1:exon

SEVgp6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: VP24
locus tag: SEVgp6
product: VP24
SIO_010081: SEVgp6
subclass of: SO_0000673
so part of: SEVgp6
location: 9826..11474
location: region:9826-11474:1
so has part: feature:9826-11474:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9826-11474:1:exon

SEVgp6
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: other
gene: VP24
locus tag: SEVgp6
note: predicted transcription start site
SIO_010081: SEVgp6
subclass of: SO_0000673
so part of: SEVgp6
location: 9826..9837
location: region:9826-9837:1
so has part: feature:9826-9837:1:exon

position:9837:1
position: 9837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9826-9837:1:exon

SEVgp6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: VP24
locus tag: SEVgp6
codon start: 1
product: membrane-associated protein
translation: MAKATGRYNLVTPKRELEQGVVFSDLCNFLVTPTVQGWKVYWAGLEFDVNQKGITLLNRLKVNDFAPAWAMTRNLFPHLFKNQQSEVQTPIWALRVILAAGILDQLMDHSLIEPLSGALNLIADWLLTTSTNHFNMRTQRVKDQLSMRMLSLIRSNIINFINKLETLHVVNYKGLLSSVEIGTPSYAIIITRTNMGYLVEVQEPDKSAMDIRHPGPVKFSLLHESTLKPVATPKPSSITSLIMEFNSSLAI
SIO_010081: SEVgp6
subclass of: SO_0000673
so part of: SEVgp6
location: 10299..11054
location: region:10299-11054:1
so has part: feature:10299-11054:1:exon

YP_138526.1
type: Protein
SIO_000068: ncbiprotein

position:10299:1
position: 10299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11054:1
position: 11054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10299-11054:1:exon

SEVgp7
type: Gene
subclass of: SO_0000704
RO_0002162: 186540
gene: L
locus tag: SEVgp7
so part of: sequence
location: 11457..18494
location: region:11457-18494:1
so has part: feature:11457-18494:1:exon
subclass of: SO_0000010

3160771
type: Gene
SIO_000068: ncbigene

position:11457:1
position: 11457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18494:1
position: 18494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11457-18494:1:exon

SEVgp7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 186540
gene: L
locus tag: SEVgp7
product: polymerase
SIO_010081: SEVgp7
subclass of: SO_0000673
so part of: SEVgp7
location: 11457..18494
location: region:11457-18494:1
so has part: feature:11457-18494:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11457-18494:1:exon

SEVgp7
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: other
gene: L
locus tag: SEVgp7
note: predicted transcription start site
SIO_010081: SEVgp7
subclass of: SO_0000673
so part of: SEVgp7
location: 11457..11468
location: region:11457-11468:1
so has part: feature:11457-11468:1:exon

position:11468:1
position: 11468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11457-11468:1:exon

SEVgp6
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: VP24
locus tag: SEVgp6
SIO_010081: SEVgp6
subclass of: SO_0000673
so part of: SEVgp6
location: 11464..11474
location: region:11464-11474:1
so has part: feature:11464-11474:1:exon

position:11464:1
position: 11464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11464-11474:1:exon

SEVgp7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 186540
gene: L
locus tag: SEVgp7
function: synthesis of viral RNAs; transcriptional editing
note: translation may start at the 2nd methionine codon of the ORF
codon start: 1
product: RNA-dependent RNA polymerase
translation: MMATQHTQYPDARLSSPIVLDQCDLVTRACGLYSEYSLNPKLKTCRLPKHIYRLKYDTIVLRFISDVPVATIPIDYIAPMLINVLADSKNVPLEPPCLSFLDEIVNYTVQDAAFLNYYMNQIKTQEGVITDQLKQNIRRVIHKNRYLSALFFWHDLAILTRRGRMNRGNVRSTWFVTNEVVDILGYGDYIFWKIPIALLPMNTANVPHASTDWYQPNIFKEAIQGHTHIISVSTAEVLIMCKDLVTSRFNTLLIAELARLEDPVSADYPLVDNIQSLYNAGDYLLSILGSEGYKIIKYLEPLCLAKIQLCSQYTERKGRFLTQMHLAVIQTLRELLLNRGLKKSQLSKIREFHQLLLRLRSTPQQLCELFSIQKHWGHPVLHSEKAIQKVKNHATVLKALRPIIIFETYCVFKYSVAKHFFDSQGTWYSVISDRCLTPGLNSYIRRNQFPPLPMIKDLLWEFYHLDHPPLFSTKIISDLSIFIKDRATAVEQTCWDAVFEPNVLGYSPPYRFNTKRVPEQFLEQEDFSIESVLQYAQELRYLLPQNRNFSFSLKEKELNVGRTFGKLPYLTRNVQTLCEALLADGLAKAFPSNMMVVTEREQKESLLHQASWHHTSDDFGEHATVRGSSFVTDLEKYNLAFRYEFTAPFIKYCNQCYGVRNVFDWMHFLIPQCYMHVSDYYNPPHNVTLENREYPPEGPSAYRGHLGGIEGLQQKLWTSISCAQISLVEIKTGFKLRSAVMGDNQCITVLSVFPLESSPNEQERCAEDNAARVAASLAKVTSACGIFLKPDETFVHSGFIYFGKKQYLNGIQLPQSLKTAARMAPLSDAIFDDLQGTLASIGTAFERSISETRHILPCRVAAAFHTYFSVRILQHHHLGFHKGSDLGQLAINKPLDFGTIALSLAVPQVLGGLSFLNPEKCLYRNLGDPVTSGLFQLKHYLSMVGMSDIFHALIAKSPGNCSAIDFVLNPGGLNVPGSQDLTSFLRQIVRRSITLSARNKLINTLFHASADLEDELVCKWLLSSTPVMSRFAADIFSRTPSGKRLQILGYLEGTRTLLASKMISNNAETPILERLRKITLQRWNLWFSYLDHCDPALMEAIQPIKCTVDIAQILREYSWAHILDGRQLIGATLPCIPEQFQTTWLKPYEQCVECSSTNNSSPYVSVALKRNVVSAWPDASRLGWTIGDGIPYIGSRTEDKIGQPAIKPRCPSAALREAIELTSRLTWVTQGSANSDQLIRPFLEARVNLSVQEILQMTPSHYSGNIVHRYNDQYSPHSFMANRMSNTATRLMVSTNTLGEFSGGGQAARDSNIIFQNVINFAVALYDIRFRNTCTSSIQYHRAHIHLTNCCTREVPAQYLTYTTTLNLDLSKYRNNELIYDSDPLRGGLNCNLSIDSPLMKGPRLNIIEDDLIRLPHLSGWELAKTVLQSIISDSSNSSTDPISSGETRSFTTHFLTYPKIGLLYSFGALISFYLGNTILCTKKIGLTEFLYYLQNQIHNLSHRSLRIFKPTFRHSSVMSRLMDIDPNFSIYIGGTAGDRGLSDAARLFLRIAISTFLSFVEEWVIFRKANIPLWVIYPLEGQRSDPPGEFLNRVKSLIVGTEDDKNKGSILSRSGEKCSSNLVYNCKSTASNFFHASLAYWRGRHRPKKTIGATNATTAPHIILPLGNSDRPPGLDLNRNNDTFIPTRIKQIVQGDSRNDRTTTTRFPPKSRSTPTSATEPPTKMYEGSTTHQGKLTDTHLDEDHNAKEFPSNPHRLVVPFFKLTKDGEYSIEPSPEESRSNIKGLLQHLRTMVDTTIYCRFTGIVSSMHYKLDEVLWEYNKFESAVTLAEGEGSGALLLIQKYGVKKLFLNTLATEHSIESEVISGYTTPRMLLPIMPKTHRGELEVILNNSASQITDITHRDWFSNQKNRIPNDADIITMDAETTENLDRSRLYEAVYTIICNHINPKTLKVVILKVFLSDLDGMCWINNYLAPMFGSGYLIKPITSSAKSSEWYLC…
SIO_010081: SEVgp7
subclass of: SO_0000673
so part of: SEVgp7
location: 11535..18167
location: region:11535-18167:1
so has part: feature:11535-18167:1:exon

YP_138527.1
type: Protein
SIO_000068: ncbiprotein

position:11535:1
position: 11535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18167:1
position: 18167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11535-18167:1:exon

SEVgp7
type: Feature
subclass of: SO_0000001
RO_0002162: 186540
regulatory class: polyA_signal_sequence
gene: L
locus tag: SEVgp7
SIO_010081: SEVgp7
subclass of: SO_0000673
so part of: SEVgp7
location: 18483..18494
location: region:18483-18494:1
so has part: feature:18483-18494:1:exon

position:18483:1
position: 18483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18483-18494:1:exon

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 186540
note: trailer region
function: regulation of initiation of RNA replication
so part of: sequence
location: 18495..18875
location: region:18495-18875:1
so has part: feature:18495-18875:1:region

position:18495:1
position: 18495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18495-18875:1:region