Macrococcus canis strain B8 plasmid pB8, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Macrococcus.
Characterization of the gamma-haemolysin genes hlgC and hlgB of Macrococcus canis
Submitted (20-JAN-2022) Institute of Veterinary Bacteriology, University of Bern, Langgassstrasse 122, Bern 3012, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP091282.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 07:40:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,447\nCDSs (total) :: 2,369\nGenes (coding) :: 2,360\nCDSs (with protein) :: 2,360\nGenes (RNA) :: 78\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 1 of 9\nPseudo Genes (incomplete) :: 7 of 9\nPseudo Genes (internal stop) :: 4 of 9\nPseudo Genes (multiple problems) :: 2 of 9\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Switzerland: Equine clinic, Vetsuisse, University of Bern
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012657303.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012657304.1
CadD family cadmium resistance transporter
COORDINATES: similar to AA sequence:RefSeq:WP_001062593.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012656890.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_012655886.1
COORDINATES: protein motif:HMM:NF018050.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF027067.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655895.1
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015000.2
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: protein motif:HMM:TIGR04226.1
GO:0018262 - isopeptide cross-linking [Evidence IEA]
isopeptide-forming domain-containing fimbrial protein
COORDINATES: protein motif:HMM:NF039493.1
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000870987.1
glucosaminidase domain-containing protein
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001575003.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:TIGR01076.1
COORDINATES: protein motif:HMM:NF024554.2
DUF3991 and TOPRIM domain-containing protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF018554.2
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005885320.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004456311.1
peptidase domain-containing ABC transporter
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: similar to AA sequence:RefSeq:WP_010772180.1
GO:0005576 - extracellular region [Evidence IEA]
lichenicidin A2 family type 2 lantibiotic
COORDINATES: similar to AA sequence:RefSeq:WP_017369960.1
COORDINATES: protein motif:HMM:TIGR03897.1
GO:0018081 - peptide cross-linking via lanthionine or 3-methyl-lanthionine [Evidence IEA]; GO:0018193 - peptidyl-amino acid modification [Evidence IEA]; GO:0009403 - toxin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002493858.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022811.2
COORDINATES: similar to AA sequence:RefSeq:WP_012008915.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012655876.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator