Trypanosoma brucei brucei TREU927 chromosome 1, complete sequence.
type: Entry
definition: Trypanosoma brucei brucei TREU927 chromosome 1, complete sequence.
sequence version: NC_008409.1
sequence date: 2018-04-13
sequence: sequence
division: CON
label: NC_008409.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA15565
dblink: SAMN02953625
keyword: HTG
keyword: RefSeq
source: Trypanosoma brucei brucei TREU927
organism: Trypanosoma brucei brucei TREU927
taxonomy: Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma.
reference: 1
references: 12907729
reference: 2
reference: 3
reference: 4
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to AL929603.\nThis sequence and annotation represents version 4 of Trypanosoma\nbrucei chromosome 1. For more information about this sequence or\nthe Trypanosoma projects at the Sanger Institute , see\nhttp://www.sanger.ac.uk/Projects/ T_brucei or the GeneDB database\n(http://www.genedb.org).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1064672
topology: linear
so has quality: SO_0000987
location: 1..1064672
location: region:1-1064672:1
RO_0002162: 185431

NC_008409
type: RefSeq
SIO_000068: refseq

PRJNA15565
type: BioProject
SIO_000068: bioproject

SAMN02953625
type: BioSample
SIO_000068: biosample

1
title: The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism
author: Hall, N.
author: Berriman, M.
author: Lennard, N.J.
author: Harris, B.R.
author: Hertz-Fowler, C.
author: Bart-Delabesse, E.N.
author: Gerrard, C.S.
author: Atkin, R.J.
author: Barron, A.J.
author: Bowman, S.
author: Bray-Allen, S.P.
author: Bringaud, F.
author: Clark, L.N.
author: Corton, C.H.
author: Cronin, A.
author: Davies, R.
author: Doggett, J.
author: Fraser, A.
author: Gruter, E.
author: Hall, S.
author: Harper, A.D.
author: Kay, M.P.
author: Leech, V.
author: Mayes, R.
author: Price, C.
author: Quail, M.A.
author: Rabbinowitsch, E.
author: Reitter, C.
author: Rutherford, K.
author: Sasse, J.
author: Sharp, S.
author: Shownkeen, R.
author: MacLeod, A.
author: Taylor, S.
author: Tweedie, A.
author: Turner, C.M.
author: Tait, A.
author: Gull, K.
author: Barrell, B.
author: Melville, S.E.
journal: Nucleic Acids Res.
volume: 31
issue: 16
pages: 4864-4873
year: 2003
pubmed: 12907729

12907729
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (10-APR-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Hertz-Fowler, C.
author: Berriman, M.
journal: Submitted (27-JUN-2005) Hertz-Fowler C., The Wellcome Trust Sanger Institute Genome Campus, Hinxton, Cambridge CB10 1SA, UK

4
title: Direct Submission
author: Berriman, M.
author: Hertz-Fowler, C.V.A.
author: Hall, N.
author: Kerhornou, A.X.
author: Bowman, S.
author: Quail, M.
author: Kay, M.P.
author: Bray-Allen, S.
author: Lennard, N.J.
author: Clark, L.N.
author: Harris, B.R.
author: Melville, S.
author: Gerrard, C.
author: Rajandream, M.A.
author: Barrell, B.G.
journal: Submitted (20-SEP-2002) The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
comments: revised by [3]

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1064672:1
position: 1064672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1064672:1:source
so part of: sequence
organism: Trypanosoma brucei brucei TREU927
mol type: genomic DNA
isolate: 927/4 GUTat10.1
sub species: brucei
chromosome: 1

185431
type: Taxonomy
SIO_000068: taxonomy

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: TTAGGG
rpt family: telomere
so part of: sequence
location: complement(1..93)
location: region:1-93:-1
so has part: feature:1-93:-1:region

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93:-1
position: 93
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-93:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(4..9)
location: region:4-9:-1
so has part: feature:4-9:-1:region

position:4:-1
position: 4
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9:-1
position: 9
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4-9:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(10..15)
location: region:10-15:-1
so has part: feature:10-15:-1:region

position:10:-1
position: 10
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15:-1
position: 15
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10-15:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(16..21)
location: region:16-21:-1
so has part: feature:16-21:-1:region

position:16:-1
position: 16
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21:-1
position: 21
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16-21:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(22..27)
location: region:22-27:-1
so has part: feature:22-27:-1:region

position:22:-1
position: 22
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27:-1
position: 27
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22-27:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(28..33)
location: region:28-33:-1
so has part: feature:28-33:-1:region

position:28:-1
position: 28
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33:-1
position: 33
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28-33:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(34..39)
location: region:34-39:-1
so has part: feature:34-39:-1:region

position:34:-1
position: 34
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39:-1
position: 39
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34-39:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(40..45)
location: region:40-45:-1
so has part: feature:40-45:-1:region

position:40:-1
position: 40
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45:-1
position: 45
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40-45:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(46..51)
location: region:46-51:-1
so has part: feature:46-51:-1:region

position:46:-1
position: 46
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51:-1
position: 51
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46-51:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(52..57)
location: region:52-57:-1
so has part: feature:52-57:-1:region

position:52:-1
position: 52
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57:-1
position: 57
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52-57:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(58..63)
location: region:58-63:-1
so has part: feature:58-63:-1:region

position:58:-1
position: 58
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63:-1
position: 63
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58-63:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(64..69)
location: region:64-69:-1
so has part: feature:64-69:-1:region

position:64:-1
position: 64
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:69:-1
position: 69
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64-69:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(70..75)
location: region:70-75:-1
so has part: feature:70-75:-1:region

position:70:-1
position: 70
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75:-1
position: 75
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-75:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(76..81)
location: region:76-81:-1
so has part: feature:76-81:-1:region

position:76:-1
position: 76
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81:-1
position: 81
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76-81:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(82..87)
location: region:82-87:-1
so has part: feature:82-87:-1:region

position:82:-1
position: 82
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87:-1
position: 87
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82-87:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(88..93)
location: region:88-93:-1
so has part: feature:88-93:-1:region

position:88:-1
position: 88
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88-93:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(113..118)
location: region:113-118:-1
so has part: feature:113-118:-1:region

position:113:-1
position: 113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118:-1
position: 118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113-118:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(148..153)
location: region:148-153:-1
so has part: feature:148-153:-1:region

position:148:-1
position: 148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153:-1
position: 153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148-153:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: inferred VSG 3' UTR, partim; TGATATATTTTAAC 14-mer derived from published consensus (Berberof et al. 1995; Majumder, Boothroyd and Weber, 1981); VSG 3'-UTR 14-mer
so part of: sequence
location: complement(318..331)
location: region:318-331:-1
so has part: feature:318-331:-1:region

position:318:-1
position: 318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:331:-1
position: 331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318-331:-1:region

TB927.1.05
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.05
old locus tag: Tb927.1.05
so part of: sequence
location: complement(<381..>1961)
location: region:381-1961:-1
so has part: feature:381-1961:-1:exon
subclass of: SO_0000010

4357137
type: Gene
SIO_000068: ncbigene

position:381:-1
position: 381
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1961:-1
position: 1961
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381-1961:-1:exon

TB927.1.05
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.05
old locus tag: Tb927.1.05
product: variant surface glycoprotein (VSG), putative
transcript id: XM_001218754.1
SIO_010081: TB927.1.05
subclass of: SO_0000673
so part of: TB927.1.05
location: complement(<381..>1961)
location: region:381-1961:-1
so has part: feature:381-1961:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:381-1961:-1:exon

TB927.1.05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.05
old locus tag: Tb927.1.05
note: GPI-Anchor Signal predicted for Tb927.1.05 by DGPI v2.04 with cleavage site probability 2.4940002 near 503
codon start: 1
product: variant surface glycoprotein (VSG), putative
translation: MLKTIIGTIVLLIPQPALSNSAADENRGPFTALCTLVNLAKQPPAQLQAPADIAATLETIAAINMTVADSTFMDKVDVNKDYATADQPFRDARPGWEKNYALFSKAKRKATGDEKAKFASWAAKKGIPNLKQQVIKLAEAAQKIGADAEAAASRLATGKVEELLNKALYGTAAPTDTSYKLATDTADNRAKLCSQKGGKGKSIPGKSLVHDLICLCARGPNSDASQGKACCGDCDGNLATEVAVNSDAKTQIDALTKACSKLGSPTELTRATLTGAVAALANQLQHKTATQSSENNVLGTMHSDGSAGCTGNAASNGGKCVVYKDGLTSSGDNAVQWLKHLQEAISEEARRHAASQKLQTLATQIKLLNITLAALEHGTTAQEHVAAEDKPKAADSTDKNKECNKAKDDKEKCNELKEKGCVFNETGEANKKCQFNETKASKNGVPVTQTQTAGSTEATAVNCGQHNEKTKCEEENKGKSSPVCGWRKGKEGEPEQDKEMCRSSSFLLNNKFALSMVSAAFMALLF
SIO_010081: TB927.1.05
subclass of: SO_0000673
so part of: TB927.1.05
location: complement(381..1961)
location: region:381-1961:-1
so has part: feature:381-1961:-1:exon

XP_001218755.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE7
type: GOA
SIO_000068: goa

IPR019609
type: InterPro
SIO_000068: interpro

IPR025932
type: InterPro
SIO_000068: interpro

Q4GZE7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:381-1961:-1:exon

TB927.1.05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.05
old locus tag: Tb927.1.05
note: GPI-Anchor Signal predicted for Tb927.1.05 by DGPI v2.04 with cleavage site probability 2.4940002 near 503
SIO_010081: TB927.1.05
subclass of: SO_0000673
so part of: TB927.1.05
location: complement(450..455)
location: region:450-455:-1
so has part: feature:450-455:-1:exon

position:450:-1
position: 450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:455:-1
position: 455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450-455:-1:exon

TB927.1.05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.05
old locus tag: Tb927.1.05
note: Signal peptide predicted for Tb927.1.05 by SignalP 2.0 HMM (Signal peptide probabilty 0.961, signal anchor probability 0.000) with cleavage site probability 0.450 between residues 21 and 22
SIO_010081: TB927.1.05
subclass of: SO_0000673
so part of: TB927.1.05
location: complement(1895..1961)
location: region:1895-1961:-1
so has part: feature:1895-1961:-1:exon

position:1895:-1
position: 1895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1895-1961:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
rpt family: 76 bp repeat
so part of: sequence
location: complement(<3465..5096)
location: region:3465-5096:-1
so has part: feature:3465-5096:-1:region

position:3465:-1
position: 3465
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5096:-1
position: 5096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3465-5096:-1:region

gap
type: Gap
subclass of: SO_0000730
RO_0002162: 185431
estimated length: unknown
so part of: sequence
location: 5097..5196
location: region:5097-5196:1
so has part: feature:5097-5196:1:region

position:5097:1
position: 5097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5196:1
position: 5196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5097-5196:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
rpt family: 76 bp repeat
so part of: sequence
location: complement(5197..>6311)
location: region:5197-6311:-1
so has part: feature:5197-6311:-1:region

position:5197:-1
position: 5197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6311:-1
position: 6311
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5197-6311:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: TAA
rpt family: TAA repeat
so part of: sequence
location: complement(5731..5796)
location: region:5731-5796:-1
so has part: feature:5731-5796:-1:region

position:5731:-1
position: 5731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5796:-1
position: 5796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5731-5796:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(6341..6346)
location: region:6341-6346:-1
so has part: feature:6341-6346:-1:region

position:6341:-1
position: 6341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6346:-1
position: 6346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6341-6346:-1:region

TB927.1.10
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.10
old locus tag: Tb927.1.10
so part of: sequence
location: <6871..>7203
location: region:6871-7203:1
so has part: feature:6871-7203:1:exon
subclass of: SO_0000010

3663233
type: Gene
SIO_000068: ncbigene

position:6871:1
position: 6871
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:7203:1
position: 7203
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6871-7203:1:exon

TB927.1.10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.10
old locus tag: Tb927.1.10
product: hypothetical protein
transcript id: XM_841283.1
SIO_010081: TB927.1.10
subclass of: SO_0000673
so part of: TB927.1.10
location: <6871..>7203
location: region:6871-7203:1
so has part: feature:6871-7203:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6871-7203:1:exon

TB927.1.10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.10
old locus tag: Tb927.1.10
codon start: 1
product: hypothetical protein
translation: MIAGFCSAVFLAYTVAVSPLLSLVLTPSLSSFILQVPLPMLTFDAASCAAPVIAPTGLVRHIGSVLRDTNLTLQDSNIISKWKRRNFERYTREKIINTYVANSIQSAGSQ
SIO_010081: TB927.1.10
subclass of: SO_0000673
so part of: TB927.1.10
location: 6871..7203
location: region:6871-7203:1
so has part: feature:6871-7203:1:exon

XP_846376.1
type: Protein
SIO_000068: ncbiprotein

Q8IFJ5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:6871-7203:1:exon

TB927.1.10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.10
old locus tag: Tb927.1.10
note: Signal peptide predicted for Tb927.1.10 by SignalP 2.0 HMM (Signal peptide probabilty 0.946, signal anchor probability 0.048) with cleavage site probability 0.199 between residues 22 and 23
SIO_010081: TB927.1.10
subclass of: SO_0000673
so part of: TB927.1.10
location: 6871..6934
location: region:6871-6934:1
so has part: feature:6871-6934:1:exon

position:6934:1
position: 6934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6871-6934:1:exon

TB927.1.10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.10
old locus tag: Tb927.1.10
note: 1 probable transmembrane helix predicted for Tb927.1.10 by TMHMM2.0 at aa 7-29
SIO_010081: TB927.1.10
subclass of: SO_0000673
so part of: TB927.1.10
location: 6889..6957
location: region:6889-6957:1
so has part: feature:6889-6957:1:exon

position:6889:1
position: 6889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6957:1
position: 6957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6889-6957:1:exon

TB927.1.20
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.20
old locus tag: Tb927.1.20
pseudo: true
so part of: sequence
location: complement(7554..8555)
location: region:7554-8555:-1
so has part: feature:7554-8555:-1:exon

4357138
type: Gene
SIO_000068: ncbigene

position:7554:-1
position: 7554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8555:-1
position: 8555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7554-8555:-1:exon

TB927.1.20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.20
old locus tag: Tb927.1.20
pseudo: true
SIO_010081: TB927.1.20
subclass of: SO_0000673
so part of: TB927.1.20
location: complement(7554..8555)
location: region:7554-8555:-1
so has part: feature:7554-8555:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7554-8555:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(9820..9825)
location: region:9820-9825:-1
so has part: feature:9820-9825:-1:region

position:9820:-1
position: 9820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9825:-1
position: 9825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9820-9825:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(9908..9913)
location: region:9908-9913:-1
so has part: feature:9908-9913:-1:region

position:9908:-1
position: 9908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9913:-1
position: 9913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9908-9913:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 10628
location: region:10628-10628:1
so has part: feature:10628-10628:1:region

position:10628:1
position: 10628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10628-10628:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 10685
location: region:10685-10685:1
so has part: feature:10685-10685:1:region

position:10685:1
position: 10685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10685-10685:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 10806
location: region:10806-10806:1
so has part: feature:10806-10806:1:region

position:10806:1
position: 10806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10806-10806:1:region

TB927.1.30
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.30
old locus tag: Tb927.1.30
so part of: sequence
location: <11158..>11865
location: region:11158-11865:1
so has part: feature:11158-11865:1:exon
subclass of: SO_0000010

3663152
type: Gene
SIO_000068: ncbigene

position:11158:1
position: 11158
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:11865:1
position: 11865
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11158-11865:1:exon

TB927.1.30
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.30
old locus tag: Tb927.1.30
product: hypothetical protein
transcript id: XM_841284.1
SIO_010081: TB927.1.30
subclass of: SO_0000673
so part of: TB927.1.30
location: <11158..>11865
location: region:11158-11865:1
so has part: feature:11158-11865:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11158-11865:1:exon

TB927.1.30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.30
old locus tag: Tb927.1.30
codon start: 1
product: hypothetical protein
translation: MRTNKKTQRQIILVPHTECRLPLRRGHLGAAACPPDQGLPNSTSTASLHHAYLPAANENFQQWHNKLRRQRRQRTPCKRSATPNTTYEKHSAAQLRSRIHQPKTPPRSKRPEPRRKRTNSKSQRRRQSAIKKLHRARVTPSSSPQRLHYPKERRRPVLFPRLADIDAKTAPATRNVVADAPKKNPADHIGQRSLPSPADYRPPSELVRFLEEKPEIFPIASPVTDTGVVIGGRYV
SIO_010081: TB927.1.30
subclass of: SO_0000673
so part of: TB927.1.30
location: 11158..11865
location: region:11158-11865:1
so has part: feature:11158-11865:1:exon

XP_846377.1
type: Protein
SIO_000068: ncbiprotein

Q8IFJ4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:11158-11865:1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 185431
regulatory class: promoter
note: putative VSG expression site promoter. bases 1-21 from correspond to promoter identified in entry EMBL:X67472; bases 7-26 correspond to VUE (PMID:9297697); bases 31-58 correspond to VDE (PMID:9297697)
so part of: sequence
location: complement(11789..11865)
location: region:11789-11865:-1
so has part: feature:11789-11865:-1:region

position:11789:-1
position: 11789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11865:-1
position: 11865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11789-11865:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: 86% id to VSG ES promoter downstream element (VDE); PMID:9297697
so part of: sequence
location: complement(11808..11835)
location: region:11808-11835:-1
so has part: feature:11808-11835:-1:region

position:11808:-1
position: 11808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11835:-1
position: 11835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11808-11835:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: 76% id to VSG ES promoter upstream element (VUE); PMID:9297697
so part of: sequence
location: complement(11840..11859)
location: region:11840-11859:-1
so has part: feature:11840-11859:-1:region

position:11840:-1
position: 11840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11859:-1
position: 11859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11840-11859:-1:region

TB927.1.40
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.40
old locus tag: Tb927.1.40
so part of: sequence
location: complement(<12407..>12733)
location: region:12407-12733:-1
so has part: feature:12407-12733:-1:exon
subclass of: SO_0000010

3663172
type: Gene
SIO_000068: ncbigene

position:12407:-1
position: 12407
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:12733:-1
position: 12733
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12407-12733:-1:exon

TB927.1.40
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.40
old locus tag: Tb927.1.40
product: hypothetical protein
transcript id: XM_841285.1
SIO_010081: TB927.1.40
subclass of: SO_0000673
so part of: TB927.1.40
location: complement(<12407..>12733)
location: region:12407-12733:-1
so has part: feature:12407-12733:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12407-12733:-1:exon

TB927.1.40
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.40
old locus tag: Tb927.1.40
codon start: 1
product: hypothetical protein
translation: MKLKELIGWLTYCLSVGRNVDDLLGEYFRCFFYLLDEDINSPVFEGSLLVESYYGSGQKHVFQCYGPLVAETLECVALCLEYELAVKIVVAVCFPSAKKIFNEICNPL
SIO_010081: TB927.1.40
subclass of: SO_0000673
so part of: TB927.1.40
location: complement(12407..12733)
location: region:12407-12733:-1
so has part: feature:12407-12733:-1:exon

XP_846378.1
type: Protein
SIO_000068: ncbiprotein

Q8IFJ3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:12407-12733:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(12750..12755)
location: region:12750-12755:-1
so has part: feature:12750-12755:-1:region

position:12750:-1
position: 12750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12755:-1
position: 12755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12750-12755:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
so part of: sequence
location: complement(13141..40153)
location: region:13141-40153:-1
so has part: feature:13141-40153:-1:region

position:13141:-1
position: 13141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40153:-1
position: 40153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13141-40153:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call G, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 39982
location: region:39982-39982:1
so has part: feature:39982-39982:1:region

position:39982:1
position: 39982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39982-39982:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 40880
location: region:40880-40880:1
so has part: feature:40880-40880:1:region

position:40880:1
position: 40880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40880-40880:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 40910
location: region:40910-40910:1
so has part: feature:40910-40910:1:region

position:40910:1
position: 40910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40910-40910:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 40954
location: region:40954-40954:1
so has part: feature:40954-40954:1:region

position:40954:1
position: 40954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40954-40954:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 40965
location: region:40965-40965:1
so has part: feature:40965-40965:1:region

position:40965:1
position: 40965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40965-40965:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Two WCS reads call C, Two WCS reads call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 40981
location: region:40981-40981:1
so has part: feature:40981-40981:1:region

position:40981:1
position: 40981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40981-40981:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 41004
location: region:41004-41004:1
so has part: feature:41004-41004:1:region

position:41004:1
position: 41004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41004-41004:1:region

TB927.1.50
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
so part of: sequence
location: complement(<41026..>41283)
location: region:41026-41283:-1
so has part: feature:41026-41283:-1:exon
subclass of: SO_0000010

3663150
type: Gene
SIO_000068: ncbigene

position:41026:-1
position: 41026
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:41283:-1
position: 41283
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41026-41283:-1:exon

TB927.1.50
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
product: hypothetical protein, unlikely
transcript id: XM_841286.1
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: complement(<41026..>41283)
location: region:41026-41283:-1
so has part: feature:41026-41283:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41026-41283:-1:exon

TB927.1.50
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MHALALLVVLLSSLEKNADQDDQCRVDFFTPLAEITQNRLVTAVPYTTVWTVDATHNGADVEVLIPPLQSCQKDCSSPSVSKHFL
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: complement(41026..41283)
location: region:41026-41283:-1
so has part: feature:41026-41283:-1:exon

XP_846379.1
type: Protein
SIO_000068: ncbiprotein

Q8IFJ2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:41026-41283:-1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41030
location: region:41030-41030:1
so has part: feature:41030-41030:1:exon

position:41030:1
position: 41030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41030-41030:1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of WCS reads call TGTTT, One WCS read calls TTTT; type 2 (single nucleotide insertions/deletions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41037
location: region:41037-41037:1
so has part: feature:41037-41037:1:exon

position:41037:1
position: 41037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41037-41037:1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Two WCS reads call A, Two WCS reads call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41062
location: region:41062-41062:1
so has part: feature:41062-41062:1:exon

position:41062:1
position: 41062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41062-41062:1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of WCS reads call C, One WCS read calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41072
location: region:41072-41072:1
so has part: feature:41072-41072:1:exon

position:41072:1
position: 41072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41072-41072:1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41148
location: region:41148-41148:1
so has part: feature:41148-41148:1:exon

position:41148:1
position: 41148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41148-41148:1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of genomic shotgun reads call A, One genomic shotgun read calls T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41179
location: region:41179-41179:1
so has part: feature:41179-41179:1:exon

position:41179:1
position: 41179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41179-41179:1:exon

TB927.1.50
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Signal peptide predicted for Tb927.1.50 by SignalP 2.0 HMM (Signal peptide probabilty 0.997, signal anchor probability 0.000) with cleavage site probability 0.455 between residues 18 and 19
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: complement(41226..41283)
location: region:41226-41283:-1
so has part: feature:41226-41283:-1:exon

position:41226:-1
position: 41226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41226-41283:-1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of WCS reads call 7 T, One WCS read calls 6 T; type 2 (single nucleotide insertions/deletions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41234..41240
location: region:41234-41240:1
so has part: feature:41234-41240:1:exon

position:41234:1
position: 41234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41240:1
position: 41240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41234-41240:1:exon

TB927.1.50
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.50
old locus tag: Tb927.1.50
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.50
subclass of: SO_0000673
so part of: TB927.1.50
location: 41248
location: region:41248-41248:1
so has part: feature:41248-41248:1:exon

position:41248:1
position: 41248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41248-41248:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 41307
location: region:41307-41307:1
so has part: feature:41307-41307:1:region

position:41307:1
position: 41307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41307-41307:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, Two WCS reads calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 41353
location: region:41353-41353:1
so has part: feature:41353-41353:1:region

position:41353:1
position: 41353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41353-41353:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, Three WCS reads call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 41395
location: region:41395-41395:1
so has part: feature:41395-41395:1:region

position:41395:1
position: 41395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41395-41395:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, Two WCS reads call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 41407
location: region:41407-41407:1
so has part: feature:41407-41407:1:region

position:41407:1
position: 41407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41407-41407:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call TTTAAAATAAA;Two WCS read calls TTAAAGAAAAAA; type 8 (unclassified)
so part of: sequence
location: 41422..41432
location: region:41422-41432:1
so has part: feature:41422-41432:1:region

position:41422:1
position: 41422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41432:1
position: 41432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41422-41432:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call 11 A, Two WCS reads call 13 A; type 6 (insertion/deletion of 2 nucleotides)
so part of: sequence
location: 41435..41445
location: region:41435-41445:1
so has part: feature:41435-41445:1:region

position:41435:1
position: 41435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41445:1
position: 41445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41435-41445:1:region

TB927.1.60
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
pseudo: true
so part of: sequence
location: complement(41927..43909)
location: region:41927-43909:-1
so has part: feature:41927-43909:-1:exon

4357139
type: Gene
SIO_000068: ncbigene

position:41927:-1
position: 41927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43909:-1
position: 43909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41927-43909:-1:exon

TB927.1.60
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: complement(41927..43909)
location: region:41927-43909:-1
so has part: feature:41927-43909:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41927-43909:-1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call CATATATATATATAAT;One WCS read calls CATATATATAACC; type 5 (insertion/deletion of more than 3 nucleotides in microsatellites)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42012..42018
location: region:42012-42018:1
so has part: feature:42012-42018:1:exon

position:42012:1
position: 42012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42018:1
position: 42018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42012-42018:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42025
location: region:42025-42025:1
so has part: feature:42025-42025:1:exon

position:42025:1
position: 42025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42025-42025:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42036
location: region:42036-42036:1
so has part: feature:42036-42036:1:exon

position:42036:1
position: 42036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42036-42036:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C or G;One WCS read calls T or A; type 9 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42104
location: region:42104-42104:1
so has part: feature:42104-42104:1:exon

position:42104:1
position: 42104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42104-42104:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C or G;One WCS read calls T or A; type 9 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42112
location: region:42112-42112:1
so has part: feature:42112-42112:1:exon

position:42112:1
position: 42112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42112-42112:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C or G;One WCS read calls T or A; type 9 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42114
location: region:42114-42114:1
so has part: feature:42114-42114:1:exon

position:42114:1
position: 42114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42114-42114:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42286
location: region:42286-42286:1
so has part: feature:42286-42286:1:exon

position:42286:1
position: 42286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42286-42286:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42317
location: region:42317-42317:1
so has part: feature:42317-42317:1:exon

position:42317:1
position: 42317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42317-42317:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call 4 T, One WCS read calls 5 T; type 2 (single nucleotide insertions/deletions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42334..42337
location: region:42334-42337:1
so has part: feature:42334-42337:1:exon

position:42334:1
position: 42334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42337:1
position: 42337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42334-42337:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42340
location: region:42340-42340:1
so has part: feature:42340-42340:1:exon

position:42340:1
position: 42340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42340-42340:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls G; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42349
location: region:42349-42349:1
so has part: feature:42349-42349:1:exon

position:42349:1
position: 42349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42349-42349:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42354
location: region:42354-42354:1
so has part: feature:42354-42354:1:exon

position:42354:1
position: 42354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42354-42354:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42360
location: region:42360-42360:1
so has part: feature:42360-42360:1:exon

position:42360:1
position: 42360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42360-42360:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls G.; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42384
location: region:42384-42384:1
so has part: feature:42384-42384:1:exon

position:42384:1
position: 42384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42384-42384:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call T, One WCS read calls G; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42433
location: region:42433-42433:1
so has part: feature:42433-42433:1:exon

position:42433:1
position: 42433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42433-42433:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42467
location: region:42467-42467:1
so has part: feature:42467-42467:1:exon

position:42467:1
position: 42467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42467-42467:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls A; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42500
location: region:42500-42500:1
so has part: feature:42500-42500:1:exon

position:42500:1
position: 42500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42500-42500:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls G; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42532
location: region:42532-42532:1
so has part: feature:42532-42532:1:exon

position:42532:1
position: 42532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42532-42532:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42557
location: region:42557-42557:1
so has part: feature:42557-42557:1:exon

position:42557:1
position: 42557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42557-42557:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of WCS reads call C, One WCS read calls A; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42578
location: region:42578-42578:1
so has part: feature:42578-42578:1:exon

position:42578:1
position: 42578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42578-42578:1:exon

TB927.1.60
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.60
old locus tag: Tb927.1.60
note: Majority of genomic shotgun reads call A, One genomic shotgun read calls G; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.60
subclass of: SO_0000673
so part of: TB927.1.60
location: 42633
location: region:42633-42633:1
so has part: feature:42633-42633:1:exon

position:42633:1
position: 42633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42633-42633:1:exon

TB927.1.70
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.70
old locus tag: Tb927.1.70
so part of: sequence
location: complement(<44937..>46994)
location: region:44937-46994:-1
so has part: feature:44937-46994:-1:exon
subclass of: SO_0000010

3663433
type: Gene
SIO_000068: ncbigene

position:44937:-1
position: 44937
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:46994:-1
position: 46994
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44937-46994:-1:exon

TB927.1.70
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.70
old locus tag: Tb927.1.70
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 4 (RHS4)
transcript id: XM_841287.1
SIO_010081: TB927.1.70
subclass of: SO_0000673
so part of: TB927.1.70
location: complement(<44937..>46994)
location: region:44937-46994:-1
so has part: feature:44937-46994:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44937-46994:-1:exon

TB927.1.70
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.70
old locus tag: Tb927.1.70
codon start: 1
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 4 (RHS4)
translation: MNQNGGCVGDTRNILNGWLNGAYRPMKRQAGRKNENPSETGEGKSLEEKLYDSIYNAKWSYVMSGYDEDPLGMKVFDGKPQRIWTEAEVDITPDPANVDAEIEERPDGLEIFVLTSEKGWPYNRFALGHTERCNEKFKHVYIRREIMRVWYKVEKGLRACWVEKAEDSPIHIVIGTPGIGKSCGLGSFLLHSLLHFHEGMLDVVAYFVGKIAYLIYNKKPGEEGRVEEDRSTDSAVTFIKTIRKKRGHIIVDIGKSLLIPPDELCHLGWGVTVLTSPDTVHYEEWEKDMGSRHIIINCDDVRDIKAFVAWKNLSVALDKKVSNTAKQELRGGLKDEWETVKQRIAVAGPVPRAVYDAVGHGGRMEAVAKKIRGLDANDKNGCEDLFRSSMNWQTEEVSYQMVQIVRSRGNGVSGDSYRSKELSGHIRTLLLWAVLGITARKVAESQLMMRNRSAAFISFESHALFAVLNPRVLEMMAKNLRHLHPPEKLRGKQSILSSMTPQQLCLTGWEVLPAARQNPIERCEYMVLYTPATAYEPLVDGFFFVEGRFTMSPGRQAKKAPKPKTLVLLHVTKSGCHSTTATKLNAFTERIKGYFSDWNTFSGNMAWEMIYMNGVNGGVITNWQKCEANVDKVIPARKAKQLQTFWETIEQFQVTFGDEMNAHLMVDLQEAKKAQGRRAMKAKRR
SIO_010081: TB927.1.70
subclass of: SO_0000673
so part of: TB927.1.70
location: complement(44937..46994)
location: region:44937-46994:-1
so has part: feature:44937-46994:-1:exon

XP_846380.1
type: Protein
SIO_000068: ncbiprotein

Q8IFJ1
type: GOA
SIO_000068: goa

IPR006518
type: InterPro
SIO_000068: interpro

Q8IFJ1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:44937-46994:-1:exon

TB927.1.70
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.70
old locus tag: Tb927.1.70
note: RHS4 sequence at 3'-end of RHS5-RHS4 chimera
SIO_010081: TB927.1.70
subclass of: SO_0000673
so part of: TB927.1.70
location: complement(44937..46849)
location: region:44937-46849:-1
so has part: feature:44937-46849:-1:exon

position:46849:-1
position: 46849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44937-46849:-1:exon

TB927.1.70
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.70
old locus tag: Tb927.1.70
note: RHS5 sequence at 5'-end of RHS5-RHS4 chimera
SIO_010081: TB927.1.70
subclass of: SO_0000673
so part of: TB927.1.70
location: complement(46850..46994)
location: region:46850-46994:-1
so has part: feature:46850-46994:-1:exon

position:46850:-1
position: 46850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46850-46994:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 49773
location: region:49773-49773:1
so has part: feature:49773-49773:1:region

position:49773:1
position: 49773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49773-49773:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 49807
location: region:49807-49807:1
so has part: feature:49807-49807:1:region

position:49807:1
position: 49807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49807-49807:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 49841
location: region:49841-49841:1
so has part: feature:49841-49841:1:region

position:49841:1
position: 49841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49841-49841:1:region

TB927.1.80
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.80
old locus tag: Tb927.1.80
so part of: sequence
location: complement(<49869..>50099)
location: region:49869-50099:-1
so has part: feature:49869-50099:-1:exon
subclass of: SO_0000010

3663146
type: Gene
SIO_000068: ncbigene

position:49869:-1
position: 49869
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:50099:-1
position: 50099
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49869-50099:-1:exon

TB927.1.80
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.80
old locus tag: Tb927.1.80
product: hypothetical protein, unlikely
transcript id: XM_841288.1
SIO_010081: TB927.1.80
subclass of: SO_0000673
so part of: TB927.1.80
location: complement(<49869..>50099)
location: region:49869-50099:-1
so has part: feature:49869-50099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49869-50099:-1:exon

TB927.1.80
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.80
old locus tag: Tb927.1.80
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MDFFCIFYDGNCRNIEGITEVRSGMLKKNKKKEKEHNTVNSYIATKRISFFLSEHRTMPNDIVEYYTNISGSVTLI
SIO_010081: TB927.1.80
subclass of: SO_0000673
so part of: TB927.1.80
location: complement(49869..50099)
location: region:49869-50099:-1
so has part: feature:49869-50099:-1:exon

XP_846381.1
type: Protein
SIO_000068: ncbiprotein

Q8IFJ0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:49869-50099:-1:exon

TB927.1.80
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.80
old locus tag: Tb927.1.80
note: Majority of WCS reads call T, One WCS read calls A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.80
subclass of: SO_0000673
so part of: TB927.1.80
location: 49929
location: region:49929-49929:1
so has part: feature:49929-49929:1:exon

position:49929:1
position: 49929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49929-49929:1:exon

TB927.1.80
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.80
old locus tag: Tb927.1.80
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.80
subclass of: SO_0000673
so part of: TB927.1.80
location: 49980
location: region:49980-49980:1
so has part: feature:49980-49980:1:exon

position:49980:1
position: 49980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49980-49980:1:exon

TB927.1.80
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.80
old locus tag: Tb927.1.80
note: Majority of WCS reads call T, One WCS read calls A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.80
subclass of: SO_0000673
so part of: TB927.1.80
location: 50008
location: region:50008-50008:1
so has part: feature:50008-50008:1:exon

position:50008:1
position: 50008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50008-50008:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 50135
location: region:50135-50135:1
so has part: feature:50135-50135:1:region

position:50135:1
position: 50135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50135-50135:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 50137
location: region:50137-50137:1
so has part: feature:50137-50137:1:region

position:50137:1
position: 50137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50137-50137:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 50257
location: region:50257-50257:1
so has part: feature:50257-50257:1:region

position:50257:1
position: 50257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50257-50257:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 50271
location: region:50271-50271:1
so has part: feature:50271-50271:1:region

position:50271:1
position: 50271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50271-50271:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 50295
location: region:50295-50295:1
so has part: feature:50295-50295:1:region

position:50295:1
position: 50295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50295-50295:1:region

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: complement(50428..52205)
location: region:50428-52205:-1
so has part: feature:50428-52205:-1:region

position:50428:-1
position: 50428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52205:-1
position: 52205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50428-52205:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS3 sequence at 3'-end of RHS1-RHS3 chimeric pseudogene
so part of: sequence
location: complement(50428..51617)
location: region:50428-51617:-1
so has part: feature:50428-51617:-1:region

position:51617:-1
position: 51617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50428-51617:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS1 sequence at 5'-end of RHS1-RHS3 chimeric pseudogene
so part of: sequence
location: complement(51618..52205)
location: region:51618-52205:-1
so has part: feature:51618-52205:-1:region

position:51618:-1
position: 51618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51618-52205:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(56189..56194)
location: region:56189-56194:-1
so has part: feature:56189-56194:-1:region

position:56189:-1
position: 56189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56194:-1
position: 56194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56189-56194:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of AT in one WCS read; type 5
so part of: sequence
location: 57389..57390
location: region:57389-57390:1
so has part: feature:57389-57390:1:region

position:57389:1
position: 57389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57390:1
position: 57390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57389-57390:1:region

TB927.1.100
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
pseudo: true
so part of: sequence
location: complement(57401..59283)
location: region:57401-59283:-1
so has part: feature:57401-59283:-1:exon

4357141
type: Gene
SIO_000068: ncbigene

position:57401:-1
position: 57401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59283:-1
position: 59283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57401-59283:-1:exon

TB927.1.100
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
pseudo: true
SIO_010081: TB927.1.100
subclass of: SO_0000673
so part of: TB927.1.100
location: complement(57401..59283)
location: region:57401-59283:-1
so has part: feature:57401-59283:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:57401-59283:-1:exon

TB927.1.100
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
note: One WCS read calls T, One WCS read calls C; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.100
subclass of: SO_0000673
so part of: TB927.1.100
location: 57401
location: region:57401-57401:1
so has part: feature:57401-57401:1:exon

position:57401:1
position: 57401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57401-57401:1:exon

TB927.1.100
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
note: One WCS read calls A, One WCS read calls T; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.100
subclass of: SO_0000673
so part of: TB927.1.100
location: 57407
location: region:57407-57407:1
so has part: feature:57407-57407:1:exon

position:57407:1
position: 57407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57407-57407:1:exon

TB927.1.100
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
note: One WCS read calls C, One WCS read calls T; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.100
subclass of: SO_0000673
so part of: TB927.1.100
location: 57411
location: region:57411-57411:1
so has part: feature:57411-57411:1:exon

position:57411:1
position: 57411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57411-57411:1:exon

TB927.1.100
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
note: One WCS read calls C, One WCS read calls T; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.100
subclass of: SO_0000673
so part of: TB927.1.100
location: 57416
location: region:57416-57416:1
so has part: feature:57416-57416:1:exon

position:57416:1
position: 57416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57416-57416:1:exon

TB927.1.100
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.100
old locus tag: Tb927.1.100
note: One WCS read calls A, One WCS read calls C; type 1 (single nucleotide substitutions)
pseudo: true
SIO_010081: TB927.1.100
subclass of: SO_0000673
so part of: TB927.1.100
location: 57440
location: region:57440-57440:1
so has part: feature:57440-57440:1:exon

position:57440:1
position: 57440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57440-57440:1:exon

TB927.1.110
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.110
old locus tag: Tb927.1.110
so part of: sequence
location: <59858..>60184
location: region:59858-60184:1
so has part: feature:59858-60184:1:exon
subclass of: SO_0000010

3663145
type: Gene
SIO_000068: ncbigene

position:59858:1
position: 59858
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:60184:1
position: 60184
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59858-60184:1:exon

TB927.1.110
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.110
old locus tag: Tb927.1.110
product: hypothetical protein, conserved
transcript id: XM_841289.1
SIO_010081: TB927.1.110
subclass of: SO_0000673
so part of: TB927.1.110
location: <59858..>60184
location: region:59858-60184:1
so has part: feature:59858-60184:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59858-60184:1:exon

TB927.1.110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.110
old locus tag: Tb927.1.110
codon start: 1
product: hypothetical protein, conserved
translation: MKTKRYNVFLRPSITLFLSFSVPLKITMWLNSSYALADKILLLLFLSRLHFHFPSLTSGTQVNYHVPFLAAAAEAHYWWTNNTLEKAQRGTSSCDHKPNQVQKRTRSP
SIO_010081: TB927.1.110
subclass of: SO_0000673
so part of: TB927.1.110
location: 59858..60184
location: region:59858-60184:1
so has part: feature:59858-60184:1:exon

XP_846382.1
type: Protein
SIO_000068: ncbiprotein

Q8IFI9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:59858-60184:1:exon

TB927.1.110
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.110
old locus tag: Tb927.1.110
note: Signal peptide predicted for Tb927.1.110 by SignalP 2.0 HMM (Signal peptide probabilty 0.658, signal anchor probability 0.015) with cleavage site probability 0.267 between residues 59 and 60
SIO_010081: TB927.1.110
subclass of: SO_0000673
so part of: TB927.1.110
location: 59858..60032
location: region:59858-60032:1
so has part: feature:59858-60032:1:exon

position:60032:1
position: 60032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59858-60032:1:exon

TB927.1.110
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.110
old locus tag: Tb927.1.110
note: 1 probable transmembrane helix predicted for Tb927.1.110 by TMHMM2.0 at aa 13-35
SIO_010081: TB927.1.110
subclass of: SO_0000673
so part of: TB927.1.110
location: 59894..59962
location: region:59894-59962:1
so has part: feature:59894-59962:1:exon

position:59894:1
position: 59894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59962:1
position: 59962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59894-59962:1:exon

TB927.1.120
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
so part of: sequence
location: complement(<60266..>62836)
location: region:60266-62836:-1
so has part: feature:60266-62836:-1:exon
subclass of: SO_0000010

3663171
type: Gene
SIO_000068: ncbigene

position:60266:-1
position: 60266
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:62836:-1
position: 62836
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60266-62836:-1:exon

TB927.1.120
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 4 (RHS4)
transcript id: XM_841290.1
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: complement(<60266..>62836)
location: region:60266-62836:-1
so has part: feature:60266-62836:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60266-62836:-1:exon

TB927.1.120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
codon start: 1
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 4 (RHS4)
translation: MNQQFPIEGRGDIEGRRRENEEAARNDAEPPAVQQRVENNNQPQWRLFSRIDAVLLEGRVHPENVSVNDFLRRNLLDDMDLDQRLLRASMFAFVQRCEEYINDVNALNRIFATPEYKVYKRFVSVYGFFEDEGILDLQQWQQADEEAKVRLQADIRGLRDGERLWIVVNALLNNALNVALERAAQTAASAVEIKGVYDSIYNAKWSYVMSGYRREPLGMRVFDGKPQRIWTEAEVDINPDPANLDARVPERPYGLEIFVLTSEEGWPYDRFALGHTEMCGENFKHVYIRREIMRVWYIIQRGLQGRWVEKAEITPRHIVIGTPGIGKSYGVGSFLLHSLLHFNDGMLDVVAYFTDGIAYLIYNKKPGEEGRVERYKFPEDAVDAIAALVSKKKKGHIIVDICRNAQTPPDGLPVYAWGVTLLTSPDEAHFHHWAKDKRSRRVIINCDDVRDMKAFVAWKKLCVLSEEAPRDKTKQQLKEDLEKEWKIVEERIDMVGPLPRFVFSAPEYHERLESVRKEARQLDSDNGKKYGKIIGKSAGWQNDVVTHKLVKIVRVSSGTVNVDSYRCRSLSVTIGNMLICTLFGILIVEMTSKEITLSDECVGANAFERLALLSLLFPRVFKVIANNLKYLRRGGEIADRRSILNDMASQQLRLIGQKALPAARQRPIERCEYMVLYLPATGNEPVVDGFFFVEGRFRRNRDGTAAPIPSNIAVLLQVTKSDRHPTATDKVQKFRKNMARYFSDWGAFSRDMVWEMIYINSVNGGTITIRQLCEGPPDRARGGDGGPLGPQTFWESIDQFQVTLKETMQAELIRAYRRESGMRNAPGLMGLAGRRRAREEVVEGRGDVAMRRRGRR
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: complement(60266..62836)
location: region:60266-62836:-1
so has part: feature:60266-62836:-1:exon

XP_846383.1
type: Protein
SIO_000068: ncbiprotein

Q8IFI8
type: GOA
SIO_000068: goa

Q8IFI8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:60266-62836:-1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call A, One WCS read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.120
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60332
location: region:60332-60332:1
so has part: feature:60332-60332:1:exon

position:60332:1
position: 60332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60332-60332:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call C, One WCS read calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 827 in Tb927.1.120 G -> A
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60357
location: region:60357-60357:1
so has part: feature:60357-60357:1:exon

position:60357:1
position: 60357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60357-60357:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.120
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60359
location: region:60359-60359:1
so has part: feature:60359-60359:1:exon

position:60359:1
position: 60359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60359-60359:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 814 in Tb927.1.120 R -> Q
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60396
location: region:60396-60396:1
so has part: feature:60396-60396:1:exon

position:60396:1
position: 60396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60396-60396:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 798 in Tb927.1.120 D -> N
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60445
location: region:60445-60445:1
so has part: feature:60445-60445:1:exon

position:60445:1
position: 60445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60445-60445:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call G, One WCS read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 780 in Tb927.1.120 A -> D
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60498
location: region:60498-60498:1
so has part: feature:60498-60498:1:exon

position:60498:1
position: 60498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60498-60498:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.120
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60605
location: region:60605-60605:1
so has part: feature:60605-60605:1:exon

position:60605:1
position: 60605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60605-60605:1:exon

TB927.1.120
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.120
old locus tag: Tb927.1.120
note: Majority of WCS reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 738 in Tb927.1.120 M -> I
SIO_010081: TB927.1.120
subclass of: SO_0000673
so part of: TB927.1.120
location: 60623
location: region:60623-60623:1
so has part: feature:60623-60623:1:exon

position:60623:1
position: 60623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60623-60623:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 63742
location: region:63742-63742:1
so has part: feature:63742-63742:1:region

position:63742:1
position: 63742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63742-63742:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 63762
location: region:63762-63762:1
so has part: feature:63762-63762:1:region

position:63762:1
position: 63762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63762-63762:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(65881..65886)
location: region:65881-65886:-1
so has part: feature:65881-65886:-1:region

position:65881:-1
position: 65881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65886:-1
position: 65886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65881-65886:-1:region

TB927.1.180
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.180
old locus tag: Tb927.1.180
so part of: sequence
location: complement(<69904..>72405)
location: region:69904-72405:-1
so has part: feature:69904-72405:-1:exon
subclass of: SO_0000010

3663149
type: Gene
SIO_000068: ncbigene

position:69904:-1
position: 69904
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:72405:-1
position: 72405
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69904-72405:-1:exon

TB927.1.180
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.180
old locus tag: Tb927.1.180
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 1 (RHS1)
transcript id: XM_841296.1
SIO_010081: TB927.1.180
subclass of: SO_0000673
so part of: TB927.1.180
location: complement(<69904..>72405)
location: region:69904-72405:-1
so has part: feature:69904-72405:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69904-72405:-1:exon

TB927.1.180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.180
old locus tag: Tb927.1.180
codon start: 1
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 1 (RHS1)
translation: MSRANSPAAPQGNNENQQVADNFEGPMRRPRDENVPPPPPPAAAAAAQPPQIRQRTEGGPNWTMDSKVRDVLLDDYAGLRDMTVNDFIQKFVGGTFAVAEAENVRMPIFVKNPRKYIVDAEILEDIQGTNEFKTVKTAIDLSEKVDYLDEKEIYYLSQWEEKGTVEIREFVGPVARGRLDGAVTAAKRAEKRAAQTADGSELKGVYDSIYNATWGYVESGYDEEPLGMKVFNGRPPHMWTKEEVDVSHTPETMNEPLPRHGNLEIAVLTSQMGWPYTSFEKNPNDYDINHEKGVEYVFKSDVYIRREALRVWYKVENVLNRWLMDEVIVDDASNVLIGTPGIGKSFSVGSLLLYKLLHYEASQLQIIIYVVRGKAYVFHKPIGGRAGYVTFYNDYGNAFTVVEQIIGGSRSGEDIKGYVIFDVDKDHPAPTKPPAGCAGIALSSPNVKQFHEWSKQNTASDIYMNCDTLKDLEAIHISRWGKIAPAYKWSPPVAKEKIESEWQEIQGRIRIVGPLLRHIGRLSSYNRQEGKVQEAIGKMKDDDMNDYAKYFQNAAMWQTDEVSHKLVGVVRVKEEKLLCEMYRCRPLSSYTGQAILDFLIPWLTDKYAAMSALLSNRAIAAYMFEKSGIEALSHENTLTELARELQGLSFARNQIPQSVLQVLQEPRLIGPSIVVPEDVPIVAGAEIQYMKLYKPQSRSFPVVDAFFFVESPKTFVGLQYTVSGRHPCSTGGLFKMKRYLRSYFQGWDNFSNDMVWEIIYVQRVDSEKITKPQCCERTDRDEGQNNEVEERFWKREVRQFAVSLYKHIIALYVELKTRGENNNGVNNRGGNNA
SIO_010081: TB927.1.180
subclass of: SO_0000673
so part of: TB927.1.180
location: complement(69904..72405)
location: region:69904-72405:-1
so has part: feature:69904-72405:-1:exon

XP_846389.1
type: Protein
SIO_000068: ncbiprotein

Q8IFI2
type: GOA
SIO_000068: goa

Q8IFI2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:69904-72405:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads and TP3D18 call T, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 75189
location: region:75189-75189:1
so has part: feature:75189-75189:1:region

position:75189:1
position: 75189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75189-75189:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TPB12C6 and TP3D18 reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 75202
location: region:75202-75202:1
so has part: feature:75202-75202:1:region

position:75202:1
position: 75202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75202-75202:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 75249
location: region:75249-75249:1
so has part: feature:75249-75249:1:region

position:75249:1
position: 75249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75249-75249:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 75278
location: region:75278-75278:1
so has part: feature:75278-75278:1:region

position:75278:1
position: 75278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75278-75278:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 75355
location: region:75355-75355:1
so has part: feature:75355-75355:1:region

position:75355:1
position: 75355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75355-75355:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call A, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 75356
location: region:75356-75356:1
so has part: feature:75356-75356:1:region

position:75356:1
position: 75356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75356-75356:1:region

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: complement(75424..77915)
location: region:75424-77915:-1
so has part: feature:75424-77915:-1:region

position:75424:-1
position: 75424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77915:-1
position: 77915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75424-77915:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS2 sequence at 3'-end of RHS1-RHS2 chimeric pseudogene
so part of: sequence
location: complement(75424..77356)
location: region:75424-77356:-1
so has part: feature:75424-77356:-1:region

position:77356:-1
position: 77356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75424-77356:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS1 sequence at 5'-end of RHS1-RHS2 chimeric pseudogene
so part of: sequence
location: complement(77357..77915)
location: region:77357-77915:-1
so has part: feature:77357-77915:-1:region

position:77357:-1
position: 77357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77357-77915:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call 3 A, One WCS read calls 4 A; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 77974
location: region:77974-77974:1
so has part: feature:77974-77974:1:region

position:77974:1
position: 77974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77974-77974:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 78268
location: region:78268-78268:1
so has part: feature:78268-78268:1:region

position:78268:1
position: 78268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78268-78268:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of genomic shotgun reads call A, One genomic shotgun read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 78325
location: region:78325-78325:1
so has part: feature:78325-78325:1:region

position:78325:1
position: 78325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78325-78325:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 78332
location: region:78332-78332:1
so has part: feature:78332-78332:1:region

position:78332:1
position: 78332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78332-78332:1:region

TB927.1.200
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.200
old locus tag: Tb927.1.200
so part of: sequence
location: <80183..>80518
location: region:80183-80518:1
so has part: feature:80183-80518:1:exon
subclass of: SO_0000010

3663390
type: Gene
SIO_000068: ncbigene

position:80183:1
position: 80183
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:80518:1
position: 80518
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80183-80518:1:exon

TB927.1.200
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.200
old locus tag: Tb927.1.200
product: hypothetical protein, unlikely
transcript id: XM_841297.1
SIO_010081: TB927.1.200
subclass of: SO_0000673
so part of: TB927.1.200
location: <80183..>80518
location: region:80183-80518:1
so has part: feature:80183-80518:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:80183-80518:1:exon

TB927.1.200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.200
old locus tag: Tb927.1.200
codon start: 1
product: hypothetical protein, unlikely
translation: MVELQRNVMVLIINKFPIFLIRSPFMPLHPYIIHRELLQFLSYAFRIPYVTIQIIYIYISSYIIWTEYCLTYKLSQTYDITLFLRIIESNYFYFASLHEALENEKKESNKR
SIO_010081: TB927.1.200
subclass of: SO_0000673
so part of: TB927.1.200
location: 80183..80518
location: region:80183-80518:1
so has part: feature:80183-80518:1:exon

XP_846390.1
type: Protein
SIO_000068: ncbiprotein

Q9N955
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:80183-80518:1:exon

TB927.1.200
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.200
old locus tag: Tb927.1.200
note: 2 probable transmembrane helices predicted for Tb927.1.200 by TMHMM2.0 at aa 7-29 and 44-66
SIO_010081: TB927.1.200
subclass of: SO_0000673
so part of: TB927.1.200
location: join(80201..80269,80312..80380)
location: region:80201-80380:1
so has part: feature:80201-80269:1:exon
so has part: feature:80312-80380:1:exon

position:80201:1
position: 80201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80380:1
position: 80380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80201-80269:1:exon

position:80269:1
position: 80269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:80312-80380:1:exon

position:80312:1
position: 80312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads and TP3D18 reads call C, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 81574
location: region:81574-81574:1
so has part: feature:81574-81574:1:region

position:81574:1
position: 81574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81574-81574:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: 81827..81832
location: region:81827-81832:1
so has part: feature:81827-81832:1:region

position:81827:1
position: 81827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81832:1
position: 81832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81827-81832:1:region

TB927.1.220
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.220
old locus tag: Tb927.1.220
so part of: sequence
location: complement(<85854..>88355)
location: region:85854-88355:-1
so has part: feature:85854-88355:-1:exon
subclass of: SO_0000010

3663446
type: Gene
SIO_000068: ncbigene

position:85854:-1
position: 85854
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:88355:-1
position: 88355
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85854-88355:-1:exon

TB927.1.220
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.220
old locus tag: Tb927.1.220
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 1 (RHS1)
transcript id: XM_841299.1
SIO_010081: TB927.1.220
subclass of: SO_0000673
so part of: TB927.1.220
location: complement(<85854..>88355)
location: region:85854-88355:-1
so has part: feature:85854-88355:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85854-88355:-1:exon

TB927.1.220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.220
old locus tag: Tb927.1.220
codon start: 1
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 1 (RHS1)
translation: MSRANSPAAPQGNNENQQVADNFEGPMRRPRDENVPPPPPPAAAAAAQPPQIRQRTEGGPNWTMDSKVRDVLLDDYAGLRDMTVNDFIQKFVGGTFAVAEAENVRMPIFVKNPRKYIVDAEILEDIQGTNEFKTVKTAIDLSEKVDYLDEKEIYYLSQWEEKGTVEIREFVGPVARGRLDGAVTAAKRAEKRAHQTADGSELKGVYDSIYNATWGYVESGYDEEPLGMKVFNGRPPHMWTKEEVDVSHTPETMNEPLPRHGNLEIAVLTSQMGWPYTSFEKNPNDYDINHEKGVEYVFKSDVYIRREALRVWYKVENVLNRWLMDEVIVDDASNVLIGTPGIGKSFSVGSLLLYKLLHYEASQLQIIIYVVRGKAYVFHKPIGGRAGYVTFYNDYGNAFTVVEQIIGGSRSGEDIKGYVIFDVDKDHPAPTKPPAGCAGIALSSPNVKQFHEWSKQNTASDIYMNCDTLKDLEAIHISRWGKIAPAYKWSPPVAKEKIESEWQEIQARIRIVGPLLRHIGRLSSYNRQEGKVQEAIGKMKDDDMNDYAKYFQNAAMWQTDEVSHKLVGVVRVKEEKLLCEMYRCRPLSSYTGQAILDFLIPWLTDKYAAMSALLSNRAIAAYMFEKSGIEALSHENTLTELARELQGLSFARNQIPQSVLQVLQEPRLIGPSIVVPEDVPIVAGAEIQYMKLYKPQSRSFPVVDAFFFVESPKTFVGLQYTVSGRHPCSTGGLFKMKRYLRSYFQGWDNFSNDMVWEIIYVQRVDSEKITKPQCCERTDRDEGQNNEVEERFWKREVRQFAVSLYKHIIALYVELKTRGENNNGVNNRGGNNA
SIO_010081: TB927.1.220
subclass of: SO_0000673
so part of: TB927.1.220
location: complement(85854..88355)
location: region:85854-88355:-1
so has part: feature:85854-88355:-1:exon

XP_846392.1
type: Protein
SIO_000068: ncbiprotein

Q8IFI0
type: GOA
SIO_000068: goa

Q8IFI0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:85854-88355:-1:exon

TB927.1.230
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.230
old locus tag: Tb927.1.230
so part of: sequence
location: <90305..>90700
location: region:90305-90700:1
so has part: feature:90305-90700:1:exon
subclass of: SO_0000010

3663434
type: Gene
SIO_000068: ncbigene

position:90305:1
position: 90305
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:90700:1
position: 90700
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90305-90700:1:exon

TB927.1.230
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.230
old locus tag: Tb927.1.230
product: hypothetical protein, unlikely
transcript id: XM_841300.1
SIO_010081: TB927.1.230
subclass of: SO_0000673
so part of: TB927.1.230
location: <90305..>90700
location: region:90305-90700:1
so has part: feature:90305-90700:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90305-90700:1:exon

TB927.1.230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.230
old locus tag: Tb927.1.230
codon start: 1
product: hypothetical protein, unlikely
translation: MSIIHYSLQYNCKSFCIFTYFLIPSYWKCSTYNIPQYRSQNKNNFISFCIQFLVQQCVLIIHKVFNLPNTSLRNYFPQINKQINNQTFLNVVVKRKLNHGKLWGAHVMGTMNASLDIPLWIFTSIINLLFV
SIO_010081: TB927.1.230
subclass of: SO_0000673
so part of: TB927.1.230
location: 90305..90700
location: region:90305-90700:1
so has part: feature:90305-90700:1:exon

XP_846393.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:90305-90700:1:exon

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: complement(91365..99081)
location: region:91365-99081:-1
so has part: feature:91365-99081:-1:region

position:91365:-1
position: 91365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99081:-1
position: 99081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91365-99081:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS2 sequence at 3'-end of RHS1-RHS2-ingi-RHS2 chimeric pseudogene
so part of: sequence
location: complement(91365..92798)
location: region:91365-92798:-1
so has part: feature:91365-92798:-1:region

position:92798:-1
position: 92798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91365-92798:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: ingi (pers. comm. F. Bringaud)
so part of: sequence
location: complement(92798..98051)
location: region:92798-98051:-1
so has part: feature:92798-98051:-1:region

position:98051:-1
position: 98051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92798-98051:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: complement(92798..93051)
location: region:92798-93051:-1
so has part: feature:92798-93051:-1:region

position:93051:-1
position: 93051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92798-93051:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: possible CDS (len=2003 aa) produced by in-frame insertion of ingi element into retrotransposon hot spot protein, RHS2j; part of RHS1-RHS2-ingi-RHS2 chimera, probably a pseudogene
pseudo: true
so part of: sequence
location: complement(93070..99081)
location: region:93070-99081:-1
so has part: feature:93070-99081:-1:region

position:93070:-1
position: 93070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93070-99081:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call G, Two WCS reads call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 94793
location: region:94793-94793:1
so has part: feature:94793-94793:1:region

position:94793:1
position: 94793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94793-94793:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call T, Two WCS reads call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 94801
location: region:94801-94801:1
so has part: feature:94801-94801:1:region

position:94801:1
position: 94801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94801-94801:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: complement(97859..98051)
location: region:97859-98051:-1
so has part: feature:97859-98051:-1:region

position:97859:-1
position: 97859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97859-98051:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: 5'-end of RHS1-RHS2-ingi-RHS2 chimeric pseudogene or may be 5'-end of expressed RHS1-RHS2-ingi protein 1 chimera
so part of: sequence
location: complement(98052..99081)
location: region:98052-99081:-1
so has part: feature:98052-99081:-1:region

position:98052:-1
position: 98052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98052-99081:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS2 sequence near 5'-end of RHS1-RHS2-ingi-RHS2 chimeric pseudogene
so part of: sequence
location: complement(98052..98565)
location: region:98052-98565:-1
so has part: feature:98052-98565:-1:region

position:98565:-1
position: 98565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98052-98565:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS1 sequence at 5'-end of RHS1-RHS2-ingi-RHS2 chimeric pseudogene
so part of: sequence
location: complement(98566..99081)
location: region:98566-99081:-1
so has part: feature:98566-99081:-1:region

position:98566:-1
position: 98566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98566-99081:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TPB12C6 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 99216
location: region:99216-99216:1
so has part: feature:99216-99216:1:region

position:99216:1
position: 99216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99216-99216:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100459
location: region:100459-100459:1
so has part: feature:100459-100459:1:region

position:100459:1
position: 100459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100459-100459:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18, and TPB12C6 reads call T, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100462
location: region:100462-100462:1
so has part: feature:100462-100462:1:region

position:100462:1
position: 100462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100462-100462:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads,TP3D18 and TPB12C6 reads call T, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100911
location: region:100911-100911:1
so has part: feature:100911-100911:1:region

position:100911:1
position: 100911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100911-100911:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads,TP3D18 and TPB12C6 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100923
location: region:100923-100923:1
so has part: feature:100923-100923:1:region

position:100923:1
position: 100923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100923-100923:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TPB12C6 reads call A, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100930
location: region:100930-100930:1
so has part: feature:100930-100930:1:region

position:100930:1
position: 100930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100930-100930:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads,TP3D18,and TPB12C6 reads call G, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100938
location: region:100938-100938:1
so has part: feature:100938-100938:1:region

position:100938:1
position: 100938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100938-100938:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads,TP3D18 and TPB12C6 reads call G, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 100956
location: region:100956-100956:1
so has part: feature:100956-100956:1:region

position:100956:1
position: 100956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100956-100956:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TPB12C6 reads call C, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 101025
location: region:101025-101025:1
so has part: feature:101025-101025:1:region

position:101025:1
position: 101025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101025-101025:1:region

TB927.1.250
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.250
old locus tag: Tb927.1.250
so part of: sequence
location: complement(<103266..>103589)
location: region:103266-103589:-1
so has part: feature:103266-103589:-1:exon
subclass of: SO_0000010

3663564
type: Gene
SIO_000068: ncbigene

position:103266:-1
position: 103266
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:103589:-1
position: 103589
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103266-103589:-1:exon

TB927.1.250
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.250
old locus tag: Tb927.1.250
product: hypothetical protein, unlikely
transcript id: XM_841301.1
SIO_010081: TB927.1.250
subclass of: SO_0000673
so part of: TB927.1.250
location: complement(<103266..>103589)
location: region:103266-103589:-1
so has part: feature:103266-103589:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103266-103589:-1:exon

TB927.1.250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.250
old locus tag: Tb927.1.250
note: GPI-Anchor Signal predicted for Tb927.1.250 by DGPI v2.04 with cleavage site probability 0.30960003 near 89
codon start: 1
product: hypothetical protein, unlikely
translation: MVFFLAGIPQPSVTNSSVLPVVVLRTEFPDSVSERNCTPFIFVALTSLSYLVVSFLTFPHISQTYRDTSPCPLTCRGPSTLPVGNCGFSATTHALFRFFSPTFLLWG
SIO_010081: TB927.1.250
subclass of: SO_0000673
so part of: TB927.1.250
location: complement(103266..103589)
location: region:103266-103589:-1
so has part: feature:103266-103589:-1:exon

XP_846394.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:103266-103589:-1:exon

TB927.1.250
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.250
old locus tag: Tb927.1.250
note: GPI-Anchor Signal predicted for Tb927.1.250 by DGPI v2.04 with cleavage site probability 0.30960003 near 89
SIO_010081: TB927.1.250
subclass of: SO_0000673
so part of: TB927.1.250
location: complement(103320..103325)
location: region:103320-103325:-1
so has part: feature:103320-103325:-1:exon

position:103320:-1
position: 103320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:103325:-1
position: 103325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103320-103325:-1:exon

TB927.1.260
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.260
old locus tag: Tb927.1.260
so part of: sequence
location: complement(<106271..>106573)
location: region:106271-106573:-1
so has part: feature:106271-106573:-1:exon
subclass of: SO_0000010

3663290
type: Gene
SIO_000068: ncbigene

position:106271:-1
position: 106271
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:106573:-1
position: 106573
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106271-106573:-1:exon

TB927.1.260
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.260
old locus tag: Tb927.1.260
product: hypothetical protein, unlikely
transcript id: XM_841302.1
SIO_010081: TB927.1.260
subclass of: SO_0000673
so part of: TB927.1.260
location: complement(<106271..>106573)
location: region:106271-106573:-1
so has part: feature:106271-106573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:106271-106573:-1:exon

TB927.1.260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.260
old locus tag: Tb927.1.260
codon start: 1
product: hypothetical protein, unlikely
translation: MPFTSIPISDVSRHPLQLVHVTHHLHSPTQHSYTERIHPHFVKIGQYSLTHDFSQPCFHTFTSYIITSIRRVYDHCEPFLQFLYMQFHQGLLPLHEAVHH
SIO_010081: TB927.1.260
subclass of: SO_0000673
so part of: TB927.1.260
location: complement(106271..106573)
location: region:106271-106573:-1
so has part: feature:106271-106573:-1:exon

XP_846395.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:106271-106573:-1:exon

TB927.1.270
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.270
old locus tag: Tb927.1.270
so part of: sequence
location: <106654..>107025
location: region:106654-107025:1
so has part: feature:106654-107025:1:exon
subclass of: SO_0000010

3663273
type: Gene
SIO_000068: ncbigene

position:106654:1
position: 106654
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:107025:1
position: 107025
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106654-107025:1:exon

TB927.1.270
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.270
old locus tag: Tb927.1.270
product: hypothetical protein
transcript id: XM_841303.1
SIO_010081: TB927.1.270
subclass of: SO_0000673
so part of: TB927.1.270
location: <106654..>107025
location: region:106654-107025:1
so has part: feature:106654-107025:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:106654-107025:1:exon

TB927.1.270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.270
old locus tag: Tb927.1.270
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein
translation: MLWRKQCACRTPEHPTKGYRSVNDSLQLMEIRRTSTPLNYKLLRAYQFLPYEVPFPPHTFASQQWREGENVEAHYALYQTCLCMYLVSSDMSLTVTNMLPALGIHEHDVHKVSRTLCAARCST
SIO_010081: TB927.1.270
subclass of: SO_0000673
so part of: TB927.1.270
location: 106654..107025
location: region:106654-107025:1
so has part: feature:106654-107025:1:exon

XP_846396.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:106654-107025:1:exon

TB927.1.275
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.275
old locus tag: Tb927.1.275
pseudo: true
so part of: sequence
location: 108058..110934
location: region:108058-110934:1
so has part: feature:108058-110934:1:exon

4357134
type: Gene
SIO_000068: ncbigene

position:108058:1
position: 108058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110934:1
position: 110934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108058-110934:1:exon

TB927.1.275
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.275
old locus tag: Tb927.1.275
pseudo: true
SIO_010081: TB927.1.275
subclass of: SO_0000673
so part of: TB927.1.275
location: 108058..110934
location: region:108058-110934:1
so has part: feature:108058-110934:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108058-110934:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: 112345..112350
location: region:112345-112350:1
so has part: feature:112345-112350:1:region

position:112345:1
position: 112345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:112350:1
position: 112350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112345-112350:1:region

TB927.1.280
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.280
old locus tag: Tb927.1.280
so part of: sequence
location: <112381..>112743
location: region:112381-112743:1
so has part: feature:112381-112743:1:exon
subclass of: SO_0000010

3663644
type: Gene
SIO_000068: ncbigene

position:112381:1
position: 112381
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:112743:1
position: 112743
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112381-112743:1:exon

TB927.1.280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.280
old locus tag: Tb927.1.280
product: hypothetical protein, conserved
transcript id: XM_841304.1
SIO_010081: TB927.1.280
subclass of: SO_0000673
so part of: TB927.1.280
location: <112381..>112743
location: region:112381-112743:1
so has part: feature:112381-112743:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112381-112743:1:exon

TB927.1.280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.280
old locus tag: Tb927.1.280
codon start: 1
product: hypothetical protein, conserved
translation: MFQLVSAAEVNKAYVSYPGGVSMCLRFPFCHCVWAHAMTLIEISGHYHIWVARGESEDWDYSNSFVVVCVVLLENIATNEREGKCHLTFHAATSMHKNYMLVALRGKAVKAKVSFRFKEV
SIO_010081: TB927.1.280
subclass of: SO_0000673
so part of: TB927.1.280
location: 112381..112743
location: region:112381-112743:1
so has part: feature:112381-112743:1:exon

XP_846397.1
type: Protein
SIO_000068: ncbiprotein

IPR009566
type: InterPro
SIO_000068: interpro

Q76NL5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:112381-112743:1:exon

TB927.1.290
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
so part of: sequence
location: <112972..>117318
location: region:112972-117318:1
so has part: feature:112972-117318:1:exon
subclass of: SO_0000010

3663356
type: Gene
SIO_000068: ncbigene

position:112972:1
position: 112972
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:117318:1
position: 117318
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112972-117318:1:exon

TB927.1.290
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
product: leucine-rich repeat protein (LRRP), putative
transcript id: XM_841305.1
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: <112972..>117318
location: region:112972-117318:1
so has part: feature:112972-117318:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112972-117318:1:exon

TB927.1.290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
codon start: 1
product: leucine-rich repeat protein (LRRP), putative
translation: MKVRITDHNTFWHAPQLLPYNTSPPRLIHRLALLLKKKKHFLNTQHLKESETGTTMSGNQGRKRQRSSSPEQSEALKEPSTTEQNKLTTVTITEETRDAGNDETVISLLNEHEKLIKQTTRLESSVKALKCFMSNLTAMSGERQGGVCDDTECIHRVTLYNAADNAFSDEGLYEGALSSLCGRIQAKKLTITLSKGWKFNSRQVSKLKQLEELRIEYPRGKLVNMISLKRLQMLKRLCLRSNNIDNNDGRHLFNIGTLEELAITDTMQLTNIRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSKLCISKCNNITDATPISQLAALEELNLSNCHITKGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLDVTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEELVLDHARKVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLKFFQCEKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIEVGEELTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTDISHISNLTALEELNLGGCYYITSGWEALSELPRLRVLNLEFTRATTRDGGYYISRCKYLVTLNLELCDMTDASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKLHLRQRHDVRRPTEGFRSLLELPCLSWVDLDNVYGWSDVSCELRKRRVHIR
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 112972..117318
location: region:112972-117318:1
so has part: feature:112972-117318:1:exon

XP_846398.1
type: Protein
SIO_000068: ncbiprotein

IPR001611
type: InterPro
SIO_000068: interpro

Q9N949
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:112972-117318:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call A, One TP11F10 read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 232 in Tb927.1.290 Q -> H
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113667
location: region:113667-113667:1
so has part: feature:113667-113667:1:exon

position:113667:1
position: 113667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113667-113667:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call G, One TP11F10 read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 249 in Tb927.1.290 G -> A
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113717
location: region:113717-113717:1
so has part: feature:113717-113717:1:exon

position:113717:1
position: 113717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113717-113717:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call G, One TP11F10 read calls A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.290
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113748
location: region:113748-113748:1
so has part: feature:113748-113748:1:exon

position:113748:1
position: 113748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113748-113748:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call T, One TP11F10 read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.290
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113766
location: region:113766-113766:1
so has part: feature:113766-113766:1:exon

position:113766:1
position: 113766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113766-113766:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call A, One TP11F10 read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 282 in Tb927.1.290 K -> M
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113816
location: region:113816-113816:1
so has part: feature:113816-113816:1:exon

position:113816:1
position: 113816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113816-113816:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call G, One TP11F10 read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 285 in Tb927.1.290 E -> D
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113826
location: region:113826-113826:1
so has part: feature:113826-113826:1:exon

position:113826:1
position: 113826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113826-113826:1:exon

TB927.1.290
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.290
old locus tag: Tb927.1.290
note: Majority of WCS reads call T, One TP11F10 read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.290
SIO_010081: TB927.1.290
subclass of: SO_0000673
so part of: TB927.1.290
location: 113841
location: region:113841-113841:1
so has part: feature:113841-113841:1:exon

position:113841:1
position: 113841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113841-113841:1:exon

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: 122050..128711
location: region:122050-128711:1
so has part: feature:122050-128711:1:region

position:122050:1
position: 122050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128711:1
position: 128711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122050-128711:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS5 sequence at 5'-end of highly degenerate RHS5-ingi chimeric pseudogene
so part of: sequence
location: 122050..122517
location: region:122050-122517:1
so has part: feature:122050-122517:1:region

position:122517:1
position: 122517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122050-122517:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: ingi element inserted into RHS5 chimera to produce RHS5-ingi degenerate chimeric pseudogene
so part of: sequence
location: 122518..127722
location: region:122518-127722:1
so has part: feature:122518-127722:1:region

position:122518:1
position: 122518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127722:1
position: 127722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122518-127722:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: 122518..122765
location: region:122518-122765:1
so has part: feature:122518-122765:1:region

position:122765:1
position: 122765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122518-122765:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP3D18 reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 125491
location: region:125491-125491:1
so has part: feature:125491-125491:1:region

position:125491:1
position: 125491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125491-125491:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: 127471..127723
location: region:127471-127723:1
so has part: feature:127471-127723:1:region

position:127471:1
position: 127471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127723:1
position: 127723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127471-127723:1:region

TB927.1.310
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.310
old locus tag: Tb927.1.310
so part of: sequence
location: complement(<129633..>129884)
location: region:129633-129884:-1
so has part: feature:129633-129884:-1:exon
subclass of: SO_0000010

3663624
type: Gene
SIO_000068: ncbigene

position:129633:-1
position: 129633
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:129884:-1
position: 129884
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129633-129884:-1:exon

TB927.1.310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.310
old locus tag: Tb927.1.310
product: hypothetical protein, unlikely
transcript id: XM_841306.1
SIO_010081: TB927.1.310
subclass of: SO_0000673
so part of: TB927.1.310
location: complement(<129633..>129884)
location: region:129633-129884:-1
so has part: feature:129633-129884:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129633-129884:-1:exon

TB927.1.310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.310
old locus tag: Tb927.1.310
codon start: 1
product: hypothetical protein, unlikely
translation: MKQQITKINKQRKLRGKSTKAHHNTKKHTKTVPLISTLVDTRQRVLLAQAHPCKHKYSSQSASPLSPTASSMLWNTSVNKKKQ
SIO_010081: TB927.1.310
subclass of: SO_0000673
so part of: TB927.1.310
location: complement(129633..129884)
location: region:129633-129884:-1
so has part: feature:129633-129884:-1:exon

XP_846399.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:129633-129884:-1:exon

TB927.1.320
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.320
old locus tag: Tb927.1.320
pseudo: true
so part of: sequence
location: 130249..131017
location: region:130249-131017:1
so has part: feature:130249-131017:1:exon

4357157
type: Gene
SIO_000068: ncbigene

position:130249:1
position: 130249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131017:1
position: 131017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130249-131017:1:exon

TB927.1.320
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.320
old locus tag: Tb927.1.320
pseudo: true
SIO_010081: TB927.1.320
subclass of: SO_0000673
so part of: TB927.1.320
location: 130249..131017
location: region:130249-131017:1
so has part: feature:130249-131017:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130249-131017:1:exon

TB927.1.330
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.330
old locus tag: Tb927.1.330
pseudo: true
so part of: sequence
location: complement(131092..131944)
location: region:131092-131944:-1
so has part: feature:131092-131944:-1:exon

4357158
type: Gene
SIO_000068: ncbigene

position:131092:-1
position: 131092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131944:-1
position: 131944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131092-131944:-1:exon

TB927.1.330
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.330
old locus tag: Tb927.1.330
pseudo: true
SIO_010081: TB927.1.330
subclass of: SO_0000673
so part of: TB927.1.330
location: complement(131092..131944)
location: region:131092-131944:-1
so has part: feature:131092-131944:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:131092-131944:-1:exon

TB927.1.340
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.340
old locus tag: Tb927.1.340
so part of: sequence
location: <132309..>132683
location: region:132309-132683:1
so has part: feature:132309-132683:1:exon
subclass of: SO_0000010

3663623
type: Gene
SIO_000068: ncbigene

position:132309:1
position: 132309
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:132683:1
position: 132683
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132309-132683:1:exon

TB927.1.340
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.340
old locus tag: Tb927.1.340
product: hypothetical protein, unlikely
transcript id: XM_841307.1
SIO_010081: TB927.1.340
subclass of: SO_0000673
so part of: TB927.1.340
location: <132309..>132683
location: region:132309-132683:1
so has part: feature:132309-132683:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:132309-132683:1:exon

TB927.1.340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.340
old locus tag: Tb927.1.340
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MKQQITKINKQRKLRGKSTKAHHNTKKHTKTVPLISTLVDTRQRVLLAQAHPCKHKYSSQSASPLSPTASSMLWNTSVNKKKTIIIIILSVTSRPSTHHHSPPSQPIIINCILHVSKSPPDNQT
SIO_010081: TB927.1.340
subclass of: SO_0000673
so part of: TB927.1.340
location: 132309..132683
location: region:132309-132683:1
so has part: feature:132309-132683:1:exon

XP_846400.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:132309-132683:1:exon

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: complement(133484..135438)
location: region:133484-135438:-1
so has part: feature:133484-135438:-1:region

position:133484:-1
position: 133484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135438:-1
position: 135438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133484-135438:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS5 sequence at 3' end of RHS-RIME chimeric pseudogene
so part of: sequence
location: complement(133507..134365)
location: region:133507-134365:-1
so has part: feature:133507-134365:-1:region

position:133507:-1
position: 133507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134365:-1
position: 134365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133507-134365:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: complement(134471..134723)
location: region:134471-134723:-1
so has part: feature:134471-134723:-1:region

position:134471:-1
position: 134471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134723:-1
position: 134723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134471-134723:-1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18,TPB12C6 and TPB15A20;call 8 T, One WCS calls 11 T; type 3 (insertion/deletion of 3 nucleotides)
so part of: sequence
location: 134471..134478
location: region:134471-134478:1
so has part: feature:134471-134478:1:region

position:134471:1
position: 134471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134478:1
position: 134478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134471-134478:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: complement(134724..134971)
location: region:134724-134971:-1
so has part: feature:134724-134971:-1:region

position:134724:-1
position: 134724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134971:-1
position: 134971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134724-134971:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS5 sequence at 5'-end of RHS5-ingi pseudogene
so part of: sequence
location: complement(134973..135438)
location: region:134973-135438:-1
so has part: feature:134973-135438:-1:region

position:134973:-1
position: 134973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134973-135438:-1:region

TB927.1.360
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.360
old locus tag: Tb927.1.360
so part of: sequence
location: complement(<136080..>136397)
location: region:136080-136397:-1
so has part: feature:136080-136397:-1:exon
subclass of: SO_0000010

3663326
type: Gene
SIO_000068: ncbigene

position:136080:-1
position: 136080
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:136397:-1
position: 136397
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136080-136397:-1:exon

TB927.1.360
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.360
old locus tag: Tb927.1.360
product: hypothetical protein, unlikely
transcript id: XM_841308.1
SIO_010081: TB927.1.360
subclass of: SO_0000673
so part of: TB927.1.360
location: complement(<136080..>136397)
location: region:136080-136397:-1
so has part: feature:136080-136397:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136080-136397:-1:exon

TB927.1.360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.360
old locus tag: Tb927.1.360
codon start: 1
product: hypothetical protein, unlikely
translation: MQGALSGEGGADSNIQNNLFSHMAERTETVVKHTLQSEKSISPGADTLQRCEHKLFIYEQEASVCLFVCLFLNPFLTPASNIKYREFRNFIMTIIAVSCKMIHIL
SIO_010081: TB927.1.360
subclass of: SO_0000673
so part of: TB927.1.360
location: complement(136080..136397)
location: region:136080-136397:-1
so has part: feature:136080-136397:-1:exon

XP_846401.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:136080-136397:-1:exon

TB927.1.370
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.370
old locus tag: Tb927.1.370
so part of: sequence
location: complement(<140214..>144560)
location: region:140214-144560:-1
so has part: feature:140214-144560:-1:exon
subclass of: SO_0000010

3663232
type: Gene
SIO_000068: ncbigene

position:140214:-1
position: 140214
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:144560:-1
position: 144560
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140214-144560:-1:exon

TB927.1.370
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.370
old locus tag: Tb927.1.370
product: leucine-rich repeat protein (LRRP), putative
transcript id: XM_841309.1
SIO_010081: TB927.1.370
subclass of: SO_0000673
so part of: TB927.1.370
location: complement(<140214..>144560)
location: region:140214-144560:-1
so has part: feature:140214-144560:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:140214-144560:-1:exon

TB927.1.370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.370
old locus tag: Tb927.1.370
codon start: 1
product: leucine-rich repeat protein (LRRP), putative
translation: MKVRITDHNTFWHAPQLLPYNTSPPRLIHRLVLLLKKKKHFLNTQHLKESETGTTMSGNQGRKRQRSSSPEQSEALKEPSTTEQNKLTTITITEETRDASNDETVVSLLNEHKKLIKQTTRLESSVKALRCFMSNLTAMSGERQGGVCDDTECIHRVTLYNAADNAFSDEGLYEGALSSLCGRIQAKKLTIALSKDENFDLQGVSKLKQLEELRIEYPHGKLVNMISLNNLDMLKRLRLRSNNIDNNDARHLFSVGTLEELAITDTMQLTNIREISRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDATPISQLAALEELNLSNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIGSLGNGNSFVRLSLENCKGFGGVTPLSNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITDVTALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLNLSHCKWVTDISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSDVTVVYEIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSLVRLNIETREELTDATPLSNITSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRYNFKLTDISSISNLTALEELNLSGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNLESCDMTDASCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYCKNLNDITPLGRIKSIKKLHLSQSHDVRRLREGFRSLLELPCLSWVDLRNVYGWFDVYVELRKKRVHIR
SIO_010081: TB927.1.370
subclass of: SO_0000673
so part of: TB927.1.370
location: complement(140214..144560)
location: region:140214-144560:-1
so has part: feature:140214-144560:-1:exon

XP_846402.1
type: Protein
SIO_000068: ncbiprotein

Q9N946
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:140214-144560:-1:exon

TB927.1.370
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.370
old locus tag: Tb927.1.370
note: Majority of WCS,TP3D18 and TPB15A20 reads call C, One WCS read calls A; type 1 (single nucleotide substitutions); mis-sense mutation at 1212 in Tb927.1.370 G -> C
SIO_010081: TB927.1.370
subclass of: SO_0000673
so part of: TB927.1.370
location: 140927
location: region:140927-140927:1
so has part: feature:140927-140927:1:exon

position:140927:1
position: 140927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140927-140927:1:exon

TB927.1.370
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.370
old locus tag: Tb927.1.370
note: Majority of WCS,TP3D18 and TPB15A20 reads call C, One WCS read calls A; type 1 (single nucleotide substitutions); mis-sense mutation at 1210 in Tb927.1.370 D -> Y
SIO_010081: TB927.1.370
subclass of: SO_0000673
so part of: TB927.1.370
location: 140933
location: region:140933-140933:1
so has part: feature:140933-140933:1:exon

position:140933:1
position: 140933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140933-140933:1:exon

TB927.1.370
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.370
old locus tag: Tb927.1.370
note: Majority of WCS,TP3D18,TP16A7 and TPB15A20 reads call T, One WCS read calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 1163 in Tb927.1.370 N -> H
SIO_010081: TB927.1.370
subclass of: SO_0000673
so part of: TB927.1.370
location: 141074
location: region:141074-141074:1
so has part: feature:141074-141074:1:exon

position:141074:1
position: 141074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141074-141074:1:exon

TB927.1.380
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.380
old locus tag: Tb927.1.380
so part of: sequence
location: complement(<144726..>145151)
location: region:144726-145151:-1
so has part: feature:144726-145151:-1:exon
subclass of: SO_0000010

3663603
type: Gene
SIO_000068: ncbigene

position:144726:-1
position: 144726
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:145151:-1
position: 145151
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144726-145151:-1:exon

TB927.1.380
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.380
old locus tag: Tb927.1.380
product: hypothetical protein, conserved
transcript id: XM_841310.1
SIO_010081: TB927.1.380
subclass of: SO_0000673
so part of: TB927.1.380
location: complement(<144726..>145151)
location: region:144726-145151:-1
so has part: feature:144726-145151:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:144726-145151:-1:exon

TB927.1.380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.380
old locus tag: Tb927.1.380
codon start: 1
product: hypothetical protein, conserved
translation: MFQLVSVAEVNKAYVSYPGGVSMCLRFPFCHCVWAHAMTLIEISGHYRRWVARGESEGWNYSNSFVVVCAVLLENIAANEREGKCHLTFHAAASMHHDYMLVALQGKVVKAKVSFRFREVQRLPDTTVRNYCCCVLQALGQ
SIO_010081: TB927.1.380
subclass of: SO_0000673
so part of: TB927.1.380
location: complement(144726..145151)
location: region:144726-145151:-1
so has part: feature:144726-145151:-1:exon

XP_846403.1
type: Protein
SIO_000068: ncbiprotein

Q9N945
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:144726-145151:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: complement(145182..145187)
location: region:145182-145187:-1
so has part: feature:145182-145187:-1:region

position:145182:-1
position: 145182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145187:-1
position: 145187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145182-145187:-1:region

TB927.1.390
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.390
old locus tag: Tb927.1.390
so part of: sequence
location: <147175..>147459
location: region:147175-147459:1
so has part: feature:147175-147459:1:exon
subclass of: SO_0000010

3663402
type: Gene
SIO_000068: ncbigene

position:147175:1
position: 147175
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:147459:1
position: 147459
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147175-147459:1:exon

TB927.1.390
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.390
old locus tag: Tb927.1.390
product: hypothetical protein, unlikely
transcript id: XM_841311.1
SIO_010081: TB927.1.390
subclass of: SO_0000673
so part of: TB927.1.390
location: <147175..>147459
location: region:147175-147459:1
so has part: feature:147175-147459:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:147175-147459:1:exon

TB927.1.390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.390
old locus tag: Tb927.1.390
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MPSDFCTRQHHSVALRSFLEFEKVSEGSDGPITVMSDSLQQFLLCRAAIPHMSYAVGFSGWLLGSLGTAPLPFLLRHSFRCAFHPFFDIHCVHM
SIO_010081: TB927.1.390
subclass of: SO_0000673
so part of: TB927.1.390
location: 147175..147459
location: region:147175-147459:1
so has part: feature:147175-147459:1:exon

XP_846404.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:147175-147459:1:exon

TB927.1.390
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.390
old locus tag: Tb927.1.390
note: 1 probable transmembrane helix predicted for Tb927.1.390 by TMHMM2.0 at aa 53-75
SIO_010081: TB927.1.390
subclass of: SO_0000673
so part of: TB927.1.390
location: 147331..147399
location: region:147331-147399:1
so has part: feature:147331-147399:1:exon

position:147331:1
position: 147331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:147399:1
position: 147399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147331-147399:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: 147685..147690
location: region:147685-147690:1
so has part: feature:147685-147690:1:region

position:147685:1
position: 147685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:147690:1
position: 147690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147685-147690:1:region

TB927.1.400
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.400
old locus tag: Tb927.1.400
so part of: sequence
location: <147842..>148204
location: region:147842-148204:1
so has part: feature:147842-148204:1:exon
subclass of: SO_0000010

3663451
type: Gene
SIO_000068: ncbigene

position:147842:1
position: 147842
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:148204:1
position: 148204
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147842-148204:1:exon

TB927.1.400
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.400
old locus tag: Tb927.1.400
product: hypothetical protein, conserved
transcript id: XM_841312.1
SIO_010081: TB927.1.400
subclass of: SO_0000673
so part of: TB927.1.400
location: <147842..>148204
location: region:147842-148204:1
so has part: feature:147842-148204:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:147842-148204:1:exon

TB927.1.400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.400
old locus tag: Tb927.1.400
codon start: 1
product: hypothetical protein, conserved
translation: MPPLARSHVAVHPPCQLVIAVSAPQPTHCSAFSPQRFCFGGGGSSLRFNAFRGVAAKQKKKRIATSTSYSAVTALWEASLSRNSTGGFSAFHKINATDAQLLYFNSAAPLLLCRFVSTIL
SIO_010081: TB927.1.400
subclass of: SO_0000673
so part of: TB927.1.400
location: 147842..148204
location: region:147842-148204:1
so has part: feature:147842-148204:1:exon

XP_846405.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:147842-148204:1:exon

TB927.1.400
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.400
old locus tag: Tb927.1.400
note: Signal peptide predicted for Tb927.1.400 by SignalP 2.0 HMM (Signal peptide probabilty 0.908, signal anchor probability 0.000) with cleavage site probability 0.570 between residues 31 and 32
SIO_010081: TB927.1.400
subclass of: SO_0000673
so part of: TB927.1.400
location: 147842..147932
location: region:147842-147932:1
so has part: feature:147842-147932:1:exon

position:147932:1
position: 147932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147842-147932:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18,TPB12C6 and TPB15A20 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 149723
location: region:149723-149723:1
so has part: feature:149723-149723:1:region

position:149723:1
position: 149723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149723-149723:1:region

TB927.1.410
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.410
old locus tag: Tb927.1.410
pseudo: true
so part of: sequence
location: 151277..153022
location: region:151277-153022:1
so has part: feature:151277-153022:1:exon

4357136
type: Gene
SIO_000068: ncbigene

position:151277:1
position: 151277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153022:1
position: 153022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151277-153022:1:exon

TB927.1.410
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.410
old locus tag: Tb927.1.410
pseudo: true
SIO_010081: TB927.1.410
subclass of: SO_0000673
so part of: TB927.1.410
location: 151277..153022
location: region:151277-153022:1
so has part: feature:151277-153022:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151277-153022:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCs,TP16A7 and TP3D18 reads call A, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154045
location: region:154045-154045:1
so has part: feature:154045-154045:1:region

position:154045:1
position: 154045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154045-154045:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7 AND TP3D18 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154066
location: region:154066-154066:1
so has part: feature:154066-154066:1:region

position:154066:1
position: 154066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154066-154066:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7 and TP3D18 reads A or T;One WCS read calls G or C; type 9 (single nucleotide substitutions)
so part of: sequence
location: 154081
location: region:154081-154081:1
so has part: feature:154081-154081:1:region

position:154081:1
position: 154081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154081-154081:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7 and TP3D18 reads C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154135
location: region:154135-154135:1
so has part: feature:154135-154135:1:region

position:154135:1
position: 154135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154135-154135:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7 and TP3D18 reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154162
location: region:154162-154162:1
so has part: feature:154162-154162:1:region

position:154162:1
position: 154162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154162-154162:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7 and TP3D18 reads call G, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154180
location: region:154180-154180:1
so has part: feature:154180-154180:1:region

position:154180:1
position: 154180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154180-154180:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TP16A7 call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154197
location: region:154197-154197:1
so has part: feature:154197-154197:1:region

position:154197:1
position: 154197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154197-154197:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TP16A7 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154220
location: region:154220-154220:1
so has part: feature:154220-154220:1:region

position:154220:1
position: 154220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154220-154220:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7 and TP3D18 reads; call 6 T;One WCS read calls 5 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 154231
location: region:154231-154231:1
so has part: feature:154231-154231:1:region

position:154231:1
position: 154231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154231-154231:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TP16A7 reads call G, Three WCS reads call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154435
location: region:154435-154435:1
so has part: feature:154435-154435:1:region

position:154435:1
position: 154435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154435-154435:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TP16A7 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 154471
location: region:154471-154471:1
so has part: feature:154471-154471:1:region

position:154471:1
position: 154471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154471-154471:1:region

TB927.1.420
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.420
old locus tag: Tb927.1.420
so part of: sequence
location: <156384..>158411
location: region:156384-158411:1
so has part: feature:156384-158411:1:exon
subclass of: SO_0000010

3663276
type: Gene
SIO_000068: ncbigene

position:156384:1
position: 156384
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:158411:1
position: 158411
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156384-158411:1:exon

TB927.1.420
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.420
old locus tag: Tb927.1.420
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 5 (RHS5)
transcript id: XM_841313.1
SIO_010081: TB927.1.420
subclass of: SO_0000673
so part of: TB927.1.420
location: <156384..>158411
location: region:156384-158411:1
so has part: feature:156384-158411:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:156384-158411:1:exon

TB927.1.420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.420
old locus tag: Tb927.1.420
codon start: 1
product: retrotransposon hot spot (RHS) protein; retrotransposon hot spot protein 5 (RHS5)
translation: MNQNGGSVGDTRNVLNGWLNGAYRPMKRQAGRENENPSETGEGKSLEEKLYESIYNAKLSHIIIDDGTQPLGMRLVDGMPNEGLMWKDEEVNVVPEIEETLEQKPERTKGVELLVLTSEMGWPYTGFARGSNSDIFIRREELRVWNVVRNGIELWRTQRVIPGCLYLPRSYVAIGNPGIGKSQNLGSFILYKLLHYDAEELPVVAYFRGVAAYIFEKSSGGGVGRVKKYSKGAAMDLLEVISSNTRGYIIYDFVNKGEQPPADVAPKWGSILISSPNLRNFDSWQKQRKGAFIVVNCWAMSEMRAFFSRIGPKLFPQATPVELREKWNMYKDRVERVGPSLRYVFDEVMYEQQLTAVDGELGSIVAGNKYGIYTKVLDNCGEWRESDASHKLVKIVRIKAREGNFFDTYVCVAHSESIKKRILNVVFSGIAEEWALVSGMTRDASVIGHYFEKNAIKYLCSPKVLTCFVSLITKLPANERARRMRTRKSILQHVRDGLLKVGRTNTVPGDINWAESEGAPVELYVPCVSNFPVADAFFIFDDKEAAQASGTTGKKTIVLLQFTVASSHHTTTDEFIHLLQSLFPSAEGGGHQNEATVEQLKEITEMFHWEIIYVQHFESTAMRSEQKCEITQGKAKHRSHQFVEGFWKNNVQQYHVQYEDNIVTKMLAVAAVGRR
SIO_010081: TB927.1.420
subclass of: SO_0000673
so part of: TB927.1.420
location: 156384..158411
location: region:156384-158411:1
so has part: feature:156384-158411:1:exon

XP_846406.1
type: Protein
SIO_000068: ncbiprotein

Q9N942
type: GOA
SIO_000068: goa

Q9N942
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:156384-158411:1:exon

TB927.1.420
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.420
old locus tag: Tb927.1.420
note: Majority of WCS,TP3D18 and TPB15A20 reads call A, One WCS calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 219 in Tb927.1.420 S -> G
SIO_010081: TB927.1.420
subclass of: SO_0000673
so part of: TB927.1.420
location: 157038
location: region:157038-157038:1
so has part: feature:157038-157038:1:exon

position:157038:1
position: 157038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:157038-157038:1:exon

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: 159343..166610
location: region:159343-166610:1
so has part: feature:159343-166610:1:region

position:159343:1
position: 159343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166610:1
position: 166610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159343-166610:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS2 sequence at 5'-end of RHS2-ingi-RHS6 chimeric pseudogene
so part of: sequence
location: 159343..160433
location: region:159343-160433:1
so has part: feature:159343-160433:1:region

position:160433:1
position: 160433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159343-160433:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TPB12C6 and TPB15A20 call T, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 160389
location: region:160389-160389:1
so has part: feature:160389-160389:1:region

position:160389:1
position: 160389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160389-160389:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: ingi element apparently inserted into a pseudogene for a retrotransposon hot spot protein, RHS2-e (an RHS2-RHS6 chimera); ingi truncated (5') (pers. comm. F. Bringaud)
so part of: sequence
location: 160433..165625
location: region:160433-165625:1
so has part: feature:160433-165625:1:region

position:165625:1
position: 165625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160433-165625:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: 160433..160662
location: region:160433-160662:1
so has part: feature:160433-160662:1:region

position:160662:1
position: 160662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160433-160662:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: LFP+, was FLSW in original sequence
so part of: sequence
location: 160496..160507
location: region:160496-160507:1
so has part: feature:160496-160507:1:region

position:160496:1
position: 160496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160507:1
position: 160507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160496-160507:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: 165372..165625
location: region:165372-165625:1
so has part: feature:165372-165625:1:region

position:165372:1
position: 165372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165372-165625:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS6 sequence at 3'-end of RHS2-ingi-RHS6 chimeric pseudogene
so part of: sequence
location: 165626..167275
location: region:165626-167275:1
so has part: feature:165626-167275:1:region

position:165626:1
position: 165626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:167275:1
position: 167275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165626-167275:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS6 sequence at 3'-end of RHS2-ingi-RHS6 chimeric pseudogene
so part of: sequence
location: 165626..166609
location: region:165626-166609:1
so has part: feature:165626-166609:1:region

position:166609:1
position: 166609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165626-166609:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and; TPB12C6 reads call 8 T, One WCS read calls 9 T and;one WCS read calls 10 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 166859
location: region:166859-166859:1
so has part: feature:166859-166859:1:region

position:166859:1
position: 166859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166859-166859:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: complement(167276..167536)
location: region:167276-167536:-1
so has part: feature:167276-167536:-1:region

position:167276:-1
position: 167276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167536:-1
position: 167536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167276-167536:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: complement(167537..167786)
location: region:167537-167786:-1
so has part: feature:167537-167786:-1:region

position:167537:-1
position: 167537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167786:-1
position: 167786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167537-167786:-1:region

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: complement(167799..174089)
location: region:167799-174089:-1
so has part: feature:167799-174089:-1:region

position:167799:-1
position: 167799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:174089:-1
position: 174089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167799-174089:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: ingi element; part of RHS1-ingi chimera; ingi - one point mutation (pers. comm. F. Bringaud)
so part of: sequence
location: complement(167799..173014)
location: region:167799-173014:-1
so has part: feature:167799-173014:-1:region

position:173014:-1
position: 173014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167799-173014:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: complement(167799..168063)
location: region:167799-168063:-1
so has part: feature:167799-168063:-1:region

position:168063:-1
position: 168063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167799-168063:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: complement(172767..173014)
location: region:172767-173014:-1
so has part: feature:172767-173014:-1:region

position:172767:-1
position: 172767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172767-173014:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS1f sequence at 5'-end of RHS1-ingi chimeric pseudogene
so part of: sequence
location: complement(173016..174089)
location: region:173016-174089:-1
so has part: feature:173016-174089:-1:region

position:173016:-1
position: 173016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173016-174089:-1:region

TB927.1.460
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.460
old locus tag: Tb927.1.460
so part of: sequence
location: <176376..>176720
location: region:176376-176720:1
so has part: feature:176376-176720:1:exon
subclass of: SO_0000010

3663359
type: Gene
SIO_000068: ncbigene

position:176376:1
position: 176376
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:176720:1
position: 176720
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176376-176720:1:exon

TB927.1.460
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.460
old locus tag: Tb927.1.460
product: hypothetical protein, unlikely
transcript id: XM_841314.1
SIO_010081: TB927.1.460
subclass of: SO_0000673
so part of: TB927.1.460
location: <176376..>176720
location: region:176376-176720:1
so has part: feature:176376-176720:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:176376-176720:1:exon

TB927.1.460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.460
old locus tag: Tb927.1.460
codon start: 1
product: hypothetical protein, unlikely
translation: MVEMQRNVMVLIIHKFPIFLIRSPFMPLHPYIIHRELLQFLSYAFRIPYVTIQIIYIYISSYIIWTEYCLTYKLSQTYDITLFLRIIESNYFYFASLHEASEKEKKKRIKQKVM
SIO_010081: TB927.1.460
subclass of: SO_0000673
so part of: TB927.1.460
location: 176376..176720
location: region:176376-176720:1
so has part: feature:176376-176720:1:exon

XP_846407.1
type: Protein
SIO_000068: ncbiprotein

Q8IFH0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:176376-176720:1:exon

TB927.1.460
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.460
old locus tag: Tb927.1.460
note: 2 probable transmembrane helices predicted for Tb927.1.460 by TMHMM2.0 at aa 7-29 and 44-66
SIO_010081: TB927.1.460
subclass of: SO_0000673
so part of: TB927.1.460
location: join(176394..176462,176505..176573)
location: region:176394-176573:1
so has part: feature:176394-176462:1:exon
so has part: feature:176505-176573:1:exon

position:176394:1
position: 176394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176573:1
position: 176573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176394-176462:1:exon

position:176462:1
position: 176462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:176505-176573:1:exon

position:176505:1
position: 176505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP16A7,TP3D18,TPB12C6 and TPB15A20 reads call C, Three TP20A12 reads call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 177683
location: region:177683-177683:1
so has part: feature:177683-177683:1:region

position:177683:1
position: 177683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177683-177683:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18,TP16A7 and TP20A12 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 178177
location: region:178177-178177:1
so has part: feature:178177-178177:1:region

position:178177:1
position: 178177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178177-178177:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18,TP16A7,TPB15A20 and TP20A12 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 178387
location: region:178387-178387:1
so has part: feature:178387-178387:1:region

position:178387:1
position: 178387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178387-178387:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 178553..178558
location: region:178553-178558:1
so has part: feature:178553-178558:1:region

position:178553:1
position: 178553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:178558:1
position: 178558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178553-178558:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP20A12,TPB15A20,;TP3D18 and TPB12C6 reads call 6 G, One WCS read calls 5 G; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 178858
location: region:178858-178858:1
so has part: feature:178858-178858:1:region

position:178858:1
position: 178858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178858-178858:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TPB12C6 reads call T, One WCS and TP20A12 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 180648
location: region:180648-180648:1
so has part: feature:180648-180648:1:region

position:180648:1
position: 180648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180648-180648:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TPB12C6 reads call G, One WCS and TP20A12 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 180655
location: region:180655-180655:1
so has part: feature:180655-180655:1:region

position:180655:1
position: 180655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180655-180655:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: 181053..181058
location: region:181053-181058:1
so has part: feature:181053-181058:1:region

position:181053:1
position: 181053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181058:1
position: 181058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181053-181058:1:region

TB927.1.470
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.470
old locus tag: Tb927.1.470
so part of: sequence
location: <181089..>181451
location: region:181089-181451:1
so has part: feature:181089-181451:1:exon
subclass of: SO_0000010

3663485
type: Gene
SIO_000068: ncbigene

position:181089:1
position: 181089
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:181451:1
position: 181451
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181089-181451:1:exon

TB927.1.470
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.470
old locus tag: Tb927.1.470
product: hypothetical protein, conserved
transcript id: XM_841315.1
SIO_010081: TB927.1.470
subclass of: SO_0000673
so part of: TB927.1.470
location: <181089..>181451
location: region:181089-181451:1
so has part: feature:181089-181451:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:181089-181451:1:exon

TB927.1.470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.470
old locus tag: Tb927.1.470
codon start: 1
product: hypothetical protein, conserved
translation: MFQLVSVAEVNKAYVSYPGGVSMCLRFPFCHCVWAHAMTLIEISGHYHRWVARGESEDWDYSNSFVVVCAVLLENIAANEREGKCHLTFHAATSMHHDYMLVALRGKAVKAKVSFRFKEV
SIO_010081: TB927.1.470
subclass of: SO_0000673
so part of: TB927.1.470
location: 181089..181451
location: region:181089-181451:1
so has part: feature:181089-181451:1:exon

XP_846408.1
type: Protein
SIO_000068: ncbiprotein

Q9N938
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:181089-181451:1:exon

TB927.1.480
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
so part of: sequence
location: <181680..>186029
location: region:181680-186029:1
so has part: feature:181680-186029:1:exon
subclass of: SO_0000010

3663618
type: Gene
SIO_000068: ncbigene

position:181680:1
position: 181680
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:186029:1
position: 186029
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181680-186029:1:exon

TB927.1.480
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
product: leucine-rich repeat protein (LRRP), putative
transcript id: XM_841316.1
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: <181680..>186029
location: region:181680-186029:1
so has part: feature:181680-186029:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:181680-186029:1:exon

TB927.1.480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
codon start: 1
product: leucine-rich repeat protein (LRRP), putative
translation: MKVRITDHNTFWHAPQLLPYNTSPPRLIHRLALLLKKKKHFLNTQHLKESETGTTMSGNQGRKRQRSSSPEQSEALKEPSTTEQNKLTTITITEETRDASNDETVVSLLNEHEKLIKQTTRLESSVKALRCFMSNLTAMSGERQGGVCDDTECIHRVTLYNAADNAFSDEGLYEGALSSLCGRIQAKKLTITLSKGWKFNLEGVSKLKQLEELRIEYPRGKLVNMISLNNLDMLKRLCLRSNNIDNNDIHCIFSVGTLEELAITDTMQLTNIRGISRLTNLKCLELNSTDIDDSCIGEISACVKLSKLSVSECNNITDATPISQLAALEELNVNSCYHITKGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNLSYCIQLTDINPLSSATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISSLDFTGIGASKSLLQLTLESITGLIDVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTNVSHISSLEALNELNLNNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVTDISVLSSLSTLEELNVSSCYGIKKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYSDGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTDITPLSNITSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTDISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNIQLSDMTDASCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPPHTIEELNLSYCKNLNDITPLGRIKSIKKLHLSQSHDVRRLREGFRSLLELPCLSWVDLRNVYGWFDVYVELRKRRVHIR
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 181680..186029
location: region:181680-186029:1
so has part: feature:181680-186029:1:exon

XP_846409.1
type: Protein
SIO_000068: ncbiprotein

Q9N937
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:181680-186029:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS and TP3D18 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.480
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 182000
location: region:182000-182000:1
so has part: feature:182000-182000:1:exon

position:182000:1
position: 182000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182000-182000:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP3D18,TP16A7 and TPB15A20 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.480
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 182132
location: region:182132-182132:1
so has part: feature:182132-182132:1:exon

position:182132:1
position: 182132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182132-182132:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP16A7,TP3D18 and TPB15A20 call G, One WCS read calls A; type 1 (single nucleotide substitutions); mis-sense mutation at 499 in Tb927.1.480 V -> I
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 183174
location: region:183174-183174:1
so has part: feature:183174-183174:1:exon

position:183174:1
position: 183174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183174-183174:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP16A7,TP3D18 and TPB15A20 call T, One WCS read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 502 in Tb927.1.480 V -> A
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 183184
location: region:183184-183184:1
so has part: feature:183184-183184:1:exon

position:183184:1
position: 183184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183184-183184:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP16A7,TP3D18 and TPB15A20 call A, Two WCS reads calls G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.480
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 183437
location: region:183437-183437:1
so has part: feature:183437-183437:1:exon

position:183437:1
position: 183437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183437-183437:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP16A7,TP3D18 and TPB15A20 call T, Two WCS reads calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.480
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 183528
location: region:183528-183528:1
so has part: feature:183528-183528:1:exon

position:183528:1
position: 183528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183528-183528:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP16A7,TP3D18 and TPB15A20 call A, Two WCS reads calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 618 in Tb927.1.480 N -> S
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 183532
location: region:183532-183532:1
so has part: feature:183532-183532:1:exon

position:183532:1
position: 183532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183532-183532:1:exon

TB927.1.480
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.480
old locus tag: Tb927.1.480
note: Majority of WCS,TP16A7,TP3D18 and TPB15A20 call A, Two WCS reads calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 630 in Tb927.1.480 I -> L
SIO_010081: TB927.1.480
subclass of: SO_0000673
so part of: TB927.1.480
location: 183567
location: region:183567-183567:1
so has part: feature:183567-183567:1:exon

position:183567:1
position: 183567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183567-183567:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of AATAATAAT in one WCS read; type 5 (insertion/deletion of more than 3 nucleotides in microsatellites)
so part of: sequence
location: 189571..189572
location: region:189571-189572:1
so has part: feature:189571-189572:1:region

position:189571:1
position: 189571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189572:1
position: 189572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189571-189572:1:region

TB927.1.490
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.490
old locus tag: Tb927.1.490
so part of: sequence
location: <189837..>190085
location: region:189837-190085:1
so has part: feature:189837-190085:1:exon
subclass of: SO_0000010

3663450
type: Gene
SIO_000068: ncbigene

position:189837:1
position: 189837
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:190085:1
position: 190085
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189837-190085:1:exon

TB927.1.490
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.490
old locus tag: Tb927.1.490
product: hypothetical protein
transcript id: XM_841317.1
SIO_010081: TB927.1.490
subclass of: SO_0000673
so part of: TB927.1.490
location: <189837..>190085
location: region:189837-190085:1
so has part: feature:189837-190085:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189837-190085:1:exon

TB927.1.490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.490
old locus tag: Tb927.1.490
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein
translation: MQCALSGEGGADSNIQNNLFSHMAERTETVVKHTLQSEKSISPGADTLQRCEPKTLHLRTGGFSLFICLFVFESIPHISVQH
SIO_010081: TB927.1.490
subclass of: SO_0000673
so part of: TB927.1.490
location: 189837..190085
location: region:189837-190085:1
so has part: feature:189837-190085:1:exon

XP_846410.1
type: Protein
SIO_000068: ncbiprotein

Q8IFG9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:189837-190085:1:exon

CDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
pseudo: true
codon start: 1
product: retrotransposon hot spot protein (RHS, pseudogene), putative
so part of: sequence
location: 190759..196430
location: region:190759-196430:1
so has part: feature:190759-196430:1:region

position:190759:1
position: 190759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196430:1
position: 196430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190759-196430:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: RHS5 sequence at 5'-end of RHS5-ingi chimeric pseudogene
so part of: sequence
location: 190759..191223
location: region:190759-191223:1
so has part: feature:190759-191223:1:region

position:191223:1
position: 191223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190759-191223:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: ingi element fused to to 3'-end of trancated RHS5 sequence, forming RHS5-ingi chimeric pseudogene; ingi -several point mutations (pers. comm. F. Bringaud)
so part of: sequence
location: 191224..196434
location: region:191224-196434:1
so has part: feature:191224-196434:1:region

position:191224:1
position: 191224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196434:1
position: 196434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191224-196434:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: 191224..191473
location: region:191224-191473:1
so has part: feature:191224-191473:1:region

position:191473:1
position: 191473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191224-191473:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TPB15A20,TP3D18,TP20A12 and TP7E4 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 196047
location: region:196047-196047:1
so has part: feature:196047-196047:1:region

position:196047:1
position: 196047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196047-196047:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TPB15A20,TP3D18 and TP7E4 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 196056
location: region:196056-196056:1
so has part: feature:196056-196056:1:region

position:196056:1
position: 196056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196056-196056:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-B
so part of: sequence
location: 196177..196434
location: region:196177-196434:1
so has part: feature:196177-196434:1:region

position:196177:1
position: 196177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196177-196434:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: 5' fragment (0.6 kb) of ingi
so part of: sequence
location: complement(196435..197090)
location: region:196435-197090:-1
so has part: feature:196435-197090:-1:region

position:196435:-1
position: 196435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197090:-1
position: 197090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196435-197090:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: ingi. truncated (3') (pers. comm. F. Bringaud)
so part of: sequence
location: complement(196435..197090)
location: region:196435-197090:-1
so has part: feature:196435-197090:-1:region

urn:…
SIO_000300: 1
SIO_000628: feature:196435-197090:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME-A
so part of: sequence
location: complement(196841..197090)
location: region:196841-197090:-1
so has part: feature:196841-197090:-1:region

position:196841:-1
position: 196841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196841-197090:-1:region

TB927.1.520
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.520
old locus tag: Tb927.1.520
pseudo: true
so part of: sequence
location: 197206..198050
location: region:197206-198050:1
so has part: feature:197206-198050:1:exon

4357129
type: Gene
SIO_000068: ncbigene

position:197206:1
position: 197206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198050:1
position: 198050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197206-198050:1:exon

TB927.1.520
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.520
old locus tag: Tb927.1.520
pseudo: true
SIO_010081: TB927.1.520
subclass of: SO_0000673
so part of: TB927.1.520
location: 197206..198050
location: region:197206-198050:1
so has part: feature:197206-198050:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:197206-198050:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: RIME
so part of: sequence
location: 198083..198138
location: region:198083-198138:1
so has part: feature:198083-198138:1:region

position:198083:1
position: 198083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198138:1
position: 198138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198083-198138:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: DIRE
so part of: sequence
location: 198086..198860
location: region:198086-198860:1
so has part: feature:198086-198860:1:region

position:198086:1
position: 198086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198860:1
position: 198860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198086-198860:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP7E4,TP3D18 and TPB12C6 reads call C, Three WCS reads call T, One TP20A12 read calls T,; type 1 (single nucleotide substitutions)
so part of: sequence
location: 199022
location: region:199022-199022:1
so has part: feature:199022-199022:1:region

position:199022:1
position: 199022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:199022-199022:1:region

TB927.1.530
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.530
old locus tag: Tb927.1.530
so part of: sequence
location: complement(<203196..>204017)
location: region:203196-204017:-1
so has part: feature:203196-204017:-1:exon
subclass of: SO_0000010

4357130
type: Gene
SIO_000068: ncbigene

position:203196:-1
position: 203196
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:204017:-1
position: 204017
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203196-204017:-1:exon

TB927.1.530
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.530
old locus tag: Tb927.1.530
product: hypothetical protein, conserved
transcript id: XM_001218755.1
SIO_010081: TB927.1.530
subclass of: SO_0000673
so part of: TB927.1.530
location: complement(<203196..>204017)
location: region:203196-204017:-1
so has part: feature:203196-204017:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:203196-204017:-1:exon

TB927.1.530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.530
old locus tag: Tb927.1.530
note: GPI-Anchor Signal predicted for Tb927.1.530 by DGPI v2.04 with cleavage site probability 0.702 near 253
codon start: 1
product: hypothetical protein, conserved
translation: MRSRYMRKGNESVTVAVSSFTREDAFFLSCMRSLGIGVAPYLRCRSFPQDGFPLKLFSTLAETPENRIVAAVPCTTVWTVDDVHDDDVEGLMPPLQSCQEACSSPHVSKHFDLLYLSLYFAIQACRTTSTSSWSHWQRQLSPPATFKSDVEDAAATFLQILSENSIVPPMELMLNMCRYTQTHSCRLTKDRMKLNLKEGPVLAVMPLVDLMISQNVAEGNVALRRCDARQLRSLMRSNPLKCAKQHLSVCDDDAAYWLLETVVAVKEYIPLNL
SIO_010081: TB927.1.530
subclass of: SO_0000673
so part of: TB927.1.530
location: complement(203196..204017)
location: region:203196-204017:-1
so has part: feature:203196-204017:-1:exon

XP_001218756.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:203196-204017:-1:exon

TB927.1.530
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.530
old locus tag: Tb927.1.530
note: GPI-Anchor Signal predicted for Tb927.1.530 by DGPI v2.04 with cleavage site probability 0.702 near 253
SIO_010081: TB927.1.530
subclass of: SO_0000673
so part of: TB927.1.530
location: complement(203256..203261)
location: region:203256-203261:-1
so has part: feature:203256-203261:-1:exon

position:203256:-1
position: 203256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:203261:-1
position: 203261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203256-203261:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TPB15A20,TP7E4 and TPB12C6 reads call T, Two TP20A12 reads call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 204414
location: region:204414-204414:1
so has part: feature:204414-204414:1:region

position:204414:1
position: 204414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204414-204414:1:region

TB927.1.540
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
so part of: sequence
location: complement(<204418..>207807)
location: region:204418-207807:-1
so has part: feature:204418-207807:-1:exon
subclass of: SO_0000010

4357131
type: Gene
SIO_000068: ncbigene

position:204418:-1
position: 204418
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:207807:-1
position: 207807
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204418-207807:-1:exon

TB927.1.540
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
product: DNA-directed RNA polymerase III, putative
transcript id: XM_001218756.1
SIO_010081: TB927.1.540
subclass of: SO_0000673
so part of: TB927.1.540
location: complement(<204418..>207807)
location: region:204418-207807:-1
so has part: feature:204418-207807:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:204418-207807:-1:exon

TB927.1.540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
EC number: 2.7.7.6
codon start: 1
product: DNA-directed RNA polymerase III, putative
translation: MTPRARGCDEGYATRKLALLPALINMKGLLNHHVASFDHLINVELGRILLNESNREIKSSIDPDFSIRYSGIRVCRPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEYTSRDRSKRICTETNIKIGTIPIMLKSSSCNLYGKGREELIAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGDIVAHVQSKTHYSISKCSVTFRKGRIVMVHRSFKEDIPIVVVLKALGMESDQQIAQHIGVSPAFQSVLFACFEHAASLNVKTQDDALHFIGERRKETFWEMDETQQRHVQKSKADSAAEFLANVLLCHIREGEVQRDWNFRHKALYVCFMVRRMVEASVDSSLLDERDFYGNKRFETTGTLMGLLFEDLLKQYNRVVKTAMDQLLSKKDTTKPFNLKQLMESKMEVIQNGMRVALSSGRWELKRFNMSRQGITQVLSRLSYISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFAILSQVTLDMDDSFVRAAAYNLGVEEVDCISPNEFLKYYTVFLNGTLMGIHRYPSRLCRGVRTLRRSGRLHPHVSIAINDRQKSVQIGCDGGRIVRLYIVVRDGKPAVTSQHLDNLSSGKCSINDFLAEGLVEFIDVNEANDCLIAVYPKDIEQYTTHLEIEPLSLLGVVAGIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRTKAMNLTNYEILGAGINAMVCVMSYSGYDIEDAQVYNRSSLDRGYGRCVVLRKHEVELERLPNGEYDIILPADSNVGRHSALNSDGIASKGAVVRQFDILVNKYTPVPSMEPRPNPLVYKYPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRGPEPGDKFSSRHGQKGVVGLITDGVNMPFNEQGICPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGKFGDGTAFGGDKAEDLGEELIRHGYNYHGKDIFYSGVTGEMLRAYVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLVSSDLFTIDICRCCGFMGYNGYCSYCNAKNTVSRVNVPYAFKLLLQELQGMGISTRLSLDFMGSQ
SIO_010081: TB927.1.540
subclass of: SO_0000673
so part of: TB927.1.540
location: complement(204418..207807)
location: region:204418-207807:-1
so has part: feature:204418-207807:-1:exon

XP_001218757.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE8
type: GOA
SIO_000068: goa

IPR007120
type: InterPro
SIO_000068: interpro

IPR007121
type: InterPro
SIO_000068: interpro

IPR007641
type: InterPro
SIO_000068: interpro

IPR007642
type: InterPro
SIO_000068: interpro

IPR007644
type: InterPro
SIO_000068: interpro

IPR007645
type: InterPro
SIO_000068: interpro

IPR007646
type: InterPro
SIO_000068: interpro

IPR007647
type: InterPro
SIO_000068: interpro

IPR014724
type: InterPro
SIO_000068: interpro

IPR015712
type: InterPro
SIO_000068: interpro

Q4GZE8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:204418-207807:-1:exon

TB927.1.540
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
note: Majority of WCS,TP3D18,TP7E4 and TPB15A20 reads call T, Two TP20A12 and one WCS reads call C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.540
SIO_010081: TB927.1.540
subclass of: SO_0000673
so part of: TB927.1.540
location: 205453
location: region:205453-205453:1
so has part: feature:205453-205453:1:exon

position:205453:1
position: 205453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205453-205453:1:exon

TB927.1.540
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
note: Majority of WCS,TPB15A20,TPB12C6,TP3D18 and TP7E4 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 757 in Tb927.1.540 D -> N
SIO_010081: TB927.1.540
subclass of: SO_0000673
so part of: TB927.1.540
location: 205539
location: region:205539-205539:1
so has part: feature:205539-205539:1:exon

position:205539:1
position: 205539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205539-205539:1:exon

TB927.1.540
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
note: Majority of WCS,TPB15A20,TP3D18 and TPB12C6 reads call A, Three TP20A12 reads call G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.540
SIO_010081: TB927.1.540
subclass of: SO_0000673
so part of: TB927.1.540
location: 205930
location: region:205930-205930:1
so has part: feature:205930-205930:1:exon

position:205930:1
position: 205930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205930-205930:1:exon

TB927.1.540
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.540
old locus tag: Tb927.1.540
note: Majority of WCS,TPB15A20,TPB12C6 and TP3D18 reads call A, One WCS read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.540
SIO_010081: TB927.1.540
subclass of: SO_0000673
so part of: TB927.1.540
location: 207541
location: region:207541-207541:1
so has part: feature:207541-207541:1:exon

position:207541:1
position: 207541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207541-207541:1:exon

TB927.1.550
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.550
old locus tag: Tb927.1.550
so part of: sequence
location: complement(<208177..>208479)
location: region:208177-208479:-1
so has part: feature:208177-208479:-1:exon
subclass of: SO_0000010

4357152
type: Gene
SIO_000068: ncbigene

position:208177:-1
position: 208177
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:208479:-1
position: 208479
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208177-208479:-1:exon

TB927.1.550
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.550
old locus tag: Tb927.1.550
product: hypothetical protein, unlikely
transcript id: XM_001218757.1
SIO_010081: TB927.1.550
subclass of: SO_0000673
so part of: TB927.1.550
location: complement(<208177..>208479)
location: region:208177-208479:-1
so has part: feature:208177-208479:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208177-208479:-1:exon

TB927.1.550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.550
old locus tag: Tb927.1.550
codon start: 1
product: hypothetical protein, unlikely
translation: MDSFCALCLTFCIDERERGSARPCLHSIIVWKHFFWEHGAWDEETPRFELHIRFDATAFVQMAVMGDGFNLLYVGWRASGSWVGGKEKKKTETLMHLYVS
SIO_010081: TB927.1.550
subclass of: SO_0000673
so part of: TB927.1.550
location: complement(208177..208479)
location: region:208177-208479:-1
so has part: feature:208177-208479:-1:exon

XP_001218758.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:208177-208479:-1:exon

TB927.1.550
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.550
old locus tag: Tb927.1.550
note: Signal peptide predicted for Tb927.1.550 by SignalP 2.0 HMM (Signal peptide probabilty 0.622, signal anchor probability 0.001) with cleavage site probability 0.487 between residues 21 and 22
SIO_010081: TB927.1.550
subclass of: SO_0000673
so part of: TB927.1.550
location: complement(208413..208479)
location: region:208413-208479:-1
so has part: feature:208413-208479:-1:exon

position:208413:-1
position: 208413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208413-208479:-1:exon

TB927.1.560
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.560
old locus tag: Tb927.1.560
so part of: sequence
location: complement(<208703..>210031)
location: region:208703-210031:-1
so has part: feature:208703-210031:-1:exon
subclass of: SO_0000010

4357153
type: Gene
SIO_000068: ncbigene

position:208703:-1
position: 208703
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:210031:-1
position: 210031
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208703-210031:-1:exon

TB927.1.560
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.560
old locus tag: Tb927.1.560
product: hypothetical protein, conserved
transcript id: XM_001218758.1
SIO_010081: TB927.1.560
subclass of: SO_0000673
so part of: TB927.1.560
location: complement(<208703..>210031)
location: region:208703-210031:-1
so has part: feature:208703-210031:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208703-210031:-1:exon

TB927.1.560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.560
old locus tag: Tb927.1.560
codon start: 1
product: hypothetical protein, conserved
translation: MLFVASSSKSHLINLDTKTVERSYVTTPVERRGLVYWPTARVVMSNQSRGCASLFSPAMQQPVLRCLTPQAVTASASTSDGAFLLVGTAEGNLYVWSTLSGELLHLVRSHTRRITEIAISSDQSLIATASEDSVCKTWLLAALVARGVSAPAPRIVFNGHSLSVNACSFLDSSQSVVTASSDRSCRIFDGSTGQQQFVVTLGDVLTSVRPSPGDEMLLIGGETGSLFFVRLYSFSERQCLPTAGLIRCVNDVVTCTPFTDGHKGAIVFIHFDYTRPDYVLVGSTNGVILWWNIRTATTVEKAVDDIAGGLLSVCYVPSDATQPSSAAVPPVVLQKHPLDPLGVDFIVVSAGKKESAPISYQKEGGSRASRRKRKHQQTMEDTCVSMKRTENVVATELEEGARESTGKPTSAERFSRLREKNDELEFLKNKLKEKLRKLRAAS
SIO_010081: TB927.1.560
subclass of: SO_0000673
so part of: TB927.1.560
location: complement(208703..210031)
location: region:208703-210031:-1
so has part: feature:208703-210031:-1:exon

XP_001218759.1
type: Protein
SIO_000068: ncbiprotein

IPR001680
type: InterPro
SIO_000068: interpro

IPR015943
type: InterPro
SIO_000068: interpro

IPR017986
type: InterPro
SIO_000068: interpro

Q4GZF3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:208703-210031:-1:exon

TB927.1.560
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.560
old locus tag: Tb927.1.560
note: Majority of WCS,TP7E4,TP3D18,TPB12C6 and TPB15A20 reads call A, One WCS read calls G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.560
SIO_010081: TB927.1.560
subclass of: SO_0000673
so part of: TB927.1.560
location: 209779
location: region:209779-209779:1
so has part: feature:209779-209779:1:exon

position:209779:1
position: 209779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209779-209779:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18,TP7E4,TP3D18 and TPB12C6 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 210092
location: region:210092-210092:1
so has part: feature:210092-210092:1:region

position:210092:1
position: 210092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210092-210092:1:region

TB927.1.570
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.570
old locus tag: Tb927.1.570
so part of: sequence
location: complement(<210592..>211419)
location: region:210592-211419:-1
so has part: feature:210592-211419:-1:exon
subclass of: SO_0000010

4357154
type: Gene
SIO_000068: ncbigene

position:210592:-1
position: 210592
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:211419:-1
position: 211419
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210592-211419:-1:exon

TB927.1.570
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.570
old locus tag: Tb927.1.570
product: hypothetical protein, conserved
transcript id: XM_001218759.1
SIO_010081: TB927.1.570
subclass of: SO_0000673
so part of: TB927.1.570
location: complement(<210592..>211419)
location: region:210592-211419:-1
so has part: feature:210592-211419:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:210592-211419:-1:exon

TB927.1.570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.570
old locus tag: Tb927.1.570
codon start: 1
product: hypothetical protein, conserved
translation: MDARVHRSKRGCGRVLKRSRASSPEVVAEVGTGRPGDPFVLPLRSSPNGSGCHHCPEHSCDCLYVSKELERCYLSLQVSRQVTCKGRRELCAKSVLPPFVARLLRVANVTADDTFYDLGCGNGSVLFHVALATGASCVGVEINEHNAKVAKEAWTHLRPVFEKRRGRKLDVSIVCGDFCKVLKQDNYFSSSCVVWIANLLMPRFVNHYLSERLRSLPIGSRVLCMEDLYPHSRSVAAARDPDAFEKFEMVDYRWQEDSVEWSPASGPFYLYIKRS
SIO_010081: TB927.1.570
subclass of: SO_0000673
so part of: TB927.1.570
location: complement(210592..211419)
location: region:210592-211419:-1
so has part: feature:210592-211419:-1:exon

XP_001218760.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF2
type: GOA
SIO_000068: goa

IPR013110
type: InterPro
SIO_000068: interpro

IPR025789
type: InterPro
SIO_000068: interpro

IPR029063
type: InterPro
SIO_000068: interpro

Q4GZF2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:210592-211419:-1:exon

TB927.1.580
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.580
old locus tag: Tb927.1.580
so part of: sequence
location: complement(<212455..>214005)
location: region:212455-214005:-1
so has part: feature:212455-214005:-1:exon
subclass of: SO_0000010

4357155
type: Gene
SIO_000068: ncbigene

position:212455:-1
position: 212455
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:214005:-1
position: 214005
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212455-214005:-1:exon

TB927.1.580
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.580
old locus tag: Tb927.1.580
product: phosphate-repressible phosphate permease, putative
transcript id: XM_001218760.1
SIO_010081: TB927.1.580
subclass of: SO_0000673
so part of: TB927.1.580
location: complement(<212455..>214005)
location: region:212455-214005:-1
so has part: feature:212455-214005:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:212455-214005:-1:exon

TB927.1.580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.580
old locus tag: Tb927.1.580
codon start: 1
product: phosphate-repressible phosphate permease, putative
translation: MVHPYLWVIIVGGIVSFLTGCGVGMNDLANSFGTTYGSRVLNLWQIVILASICEFVGAVSLGSEVTSTISGGIANPMTFANEPYVLMYGMMCALSATFIWLLFATMMSLPVSSTHSIAGAIIGFALVYGGFGAVSFAKKIDEFPYVTGVAPIIASWFISPMFAGAVAASLYALLRLVVLRPANSVNRALFALPLIVGVTFFLESFFVLFKGAKARLHWGPAKASWVAALIGLGAASISAACIPLLRRRVRLITERAERERAETGMNTAPEISGDAGAISENAAGVGAAVEGPVDTANRIVPPSSEPTSDSPTAKENPANNASGLTTPGVVDEALKFDVQIYDERVEYVFRYLQVFTAACASFAHGANDVSNAIAPFSAMYSIYINQQVVEENDVPLWILVLGGAGLVVGLATLGVGIMRLLGERITKITPSRGFSAELSVALVVSLCSAFGIPVSSTHCITGAVVAISIMDCGFRKVRWMMVGKMYLGWIFTLLITAAISALLFAQGIYAPSLTSQ
SIO_010081: TB927.1.580
subclass of: SO_0000673
so part of: TB927.1.580
location: complement(212455..214005)
location: region:212455-214005:-1
so has part: feature:212455-214005:-1:exon

XP_001218761.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF1
type: GOA
SIO_000068: goa

IPR001204
type: InterPro
SIO_000068: interpro

Q4GZF1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:212455-214005:-1:exon

TB927.1.580
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.580
old locus tag: Tb927.1.580
note: 10 probable transmembrane helices predicted for Tb927.1.580 by TMHMM2.0 at aa 5-27, 40-62, 84-103, 115-137, 152-174, 186-208, 223-245, 396-418, 438-467 and 487-509
SIO_010081: TB927.1.580
subclass of: SO_0000673
so part of: TB927.1.580
location: complement(join(212479..212547,212605..212694,212752..212820,213271..213339,213382..213450,213484..213552,213595..213663,213697..213756,213820..213888,213925..213993))
location: region:212479-213993:-1
so has part: feature:213925-213993:-1:exon
so has part: feature:213820-213888:-1:exon
so has part: feature:213697-213756:-1:exon
so has part: feature:213595-213663:-1:exon
so has part: feature:213484-213552:-1:exon
so has part: feature:213382-213450:-1:exon
so has part: feature:213271-213339:-1:exon
so has part: feature:212752-212820:-1:exon
so has part: feature:212605-212694:-1:exon
so has part: feature:212479-212547:-1:exon

position:212479:-1
position: 212479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213993:-1
position: 213993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213925-213993:-1:exon

position:213925:-1
position: 213925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213820-213888:-1:exon

position:213820:-1
position: 213820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213888:-1
position: 213888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:213697-213756:-1:exon

position:213697:-1
position: 213697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213756:-1
position: 213756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:213595-213663:-1:exon

position:213595:-1
position: 213595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213663:-1
position: 213663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:213484-213552:-1:exon

position:213484:-1
position: 213484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213552:-1
position: 213552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:213382-213450:-1:exon

position:213382:-1
position: 213382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213450:-1
position: 213450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:213271-213339:-1:exon

position:213271:-1
position: 213271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213339:-1
position: 213339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:212752-212820:-1:exon

position:212752:-1
position: 212752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:212820:-1
position: 212820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:212605-212694:-1:exon

position:212605:-1
position: 212605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:212694:-1
position: 212694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:212479-212547:-1:exon

position:212547:-1
position: 212547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP3D18 and TP7E4 reads call C, Two WCS reads call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 214348
location: region:214348-214348:1
so has part: feature:214348-214348:1:region

position:214348:1
position: 214348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214348-214348:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of genomic shotgun,TPB15A20,TP3D18 and TP7E4 reads call A, Two TP20A12 reads call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 215270
location: region:215270-215270:1
so has part: feature:215270-215270:1:region

position:215270:1
position: 215270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215270-215270:1:region

TB927.1.590
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
so part of: sequence
location: complement(<215626..>216042)
location: region:215626-216042:-1
so has part: feature:215626-216042:-1:exon
subclass of: SO_0000010

4357142
type: Gene
SIO_000068: ncbigene

position:215626:-1
position: 215626
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:216042:-1
position: 216042
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215626-216042:-1:exon

TB927.1.590
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
product: hypothetical protein, unlikely
transcript id: XM_001218761.1
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: complement(<215626..>216042)
location: region:215626-216042:-1
so has part: feature:215626-216042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:215626-216042:-1:exon

TB927.1.590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
codon start: 1
product: hypothetical protein, unlikely
translation: MNAFGHLCDHQWRKSLRSVVLLFPIFSRQLILALSVPYGTVLIIFFPPPSPFLFFPFFFLCFIIPLSCLCSFNLSVLNHTRTAFAPSAAWIPRTLWSHVARRVALSGGVEGCRVTDVRECLKQNIMLEKVAGSSSSSR
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: complement(215626..216042)
location: region:215626-216042:-1
so has part: feature:215626-216042:-1:exon

XP_001218762.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:215626-216042:-1:exon

TB927.1.590
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
note: 2 probable transmembrane helices predicted for Tb927.1.590 by TMHMM2.0 at aa 20-42 and 52-74
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: complement(join(215821..215889,215917..215985))
location: region:215821-215985:-1
so has part: feature:215917-215985:-1:exon
so has part: feature:215821-215889:-1:exon

position:215821:-1
position: 215821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215985:-1
position: 215985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215917-215985:-1:exon

position:215917:-1
position: 215917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:215821-215889:-1:exon

position:215889:-1
position: 215889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.590
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
note: Majority of WCS,TP3D18,TP7E4,TPB15A20 and;TP16A7 reads call 10 G, One WCS and TP20A12 read call 12G; type 6 (insertion/deletion of 2 nucleotides)
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: 215896..215905
location: region:215896-215905:1
so has part: feature:215896-215905:1:exon

position:215896:1
position: 215896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215905:1
position: 215905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215896-215905:1:exon

TB927.1.590
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
note: Signal anchor predicted for Tb927.1.590 by SignalP 2.0 HMM (Signal peptide probabilty 0.101, signal anchor probability 0.876) with cleavage site probability 0.083 between residues 33 and 34
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: complement(215940..216042)
location: region:215940-216042:-1
so has part: feature:215940-216042:-1:exon

position:215940:-1
position: 215940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215940-216042:-1:exon

TB927.1.590
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
note: Majority of WCS,TP3D18,TP20A12,;TP7E4 and TPB15A20 reads call C, One WCS read calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 17 in Tb927.1.590 R -> T
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: 215993
location: region:215993-215993:1
so has part: feature:215993-215993:1:exon

position:215993:1
position: 215993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215993-215993:1:exon

TB927.1.590
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.590
old locus tag: Tb927.1.590
note: Majority of WCS,TP3D18,TP20A12,TP7E4 and TPB15A20 reads call T, One WCS read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.590
SIO_010081: TB927.1.590
subclass of: SO_0000673
so part of: TB927.1.590
location: 216001
location: region:216001-216001:1
so has part: feature:216001-216001:1:exon

position:216001:1
position: 216001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216001-216001:1:exon

TB927.1.600
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.600
old locus tag: Tb927.1.600
so part of: sequence
location: complement(<216164..>217711)
location: region:216164-217711:-1
so has part: feature:216164-217711:-1:exon
subclass of: SO_0000010

4357143
type: Gene
SIO_000068: ncbigene

position:216164:-1
position: 216164
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:217711:-1
position: 217711
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216164-217711:-1:exon

TB927.1.600
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.600
old locus tag: Tb927.1.600
product: phosphate-repressible phosphate permease, putative
transcript id: XM_001218762.1
SIO_010081: TB927.1.600
subclass of: SO_0000673
so part of: TB927.1.600
location: complement(<216164..>217711)
location: region:216164-217711:-1
so has part: feature:216164-217711:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:216164-217711:-1:exon

TB927.1.600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.600
old locus tag: Tb927.1.600
codon start: 1
product: phosphate-repressible phosphate permease, putative
translation: MVHPYLWVIIVGGIVSFLTGCGVGMNDLANSFGTTYGSRVLNLWQIVILASICELVGAVSLGSEVTSTISGGIANPMTFANEPYVLMYGMMCALSATFIWLLFATMMSLPVSSTHSIAGAIIGFALVYGGFGAVSFAKKIDEFPYVTGVAPIIASWFISPVFAGAVAASLYALLRLVVLRPANSVNRALFALPLIVGVTFFLESFFVLFKGADSHLHWGPAKASWVAALIGLGAASISAACIPLLRRRVRLITERAERERAETGMNTAPEISGDAGAISENAAGVGAAVEGPVDTANRIVPPSSEPTSDSPTTEYQSKNMSRLSMTGVVDEALKFDVQIYDERVEYVFRYLQVFTAVCASFAHGANDVSNAIAPFSAMYSIYINQQVVEENDVPLWILVLGGAGLVVGLATLGVRIMRLLGERITKITPSRGFSAELSAALVVSLCSAFGIPVSSTHCITGAVVAISIMDCGFRKVRWMMVGKMYLGWIFTLLITAAISALLFAQGIYAPSLTSQ
SIO_010081: TB927.1.600
subclass of: SO_0000673
so part of: TB927.1.600
location: complement(216164..217711)
location: region:216164-217711:-1
so has part: feature:216164-217711:-1:exon

XP_001218763.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF9
type: GOA
SIO_000068: goa

Q4GZF9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:216164-217711:-1:exon

TB927.1.600
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.600
old locus tag: Tb927.1.600
note: 10 probable transmembrane helices predicted for Tb927.1.600 by TMHMM2.0 at aa 5-27, 40-62, 84-103, 115-137, 152-174, 186-208, 223-245, 395-417, 437-466 and 486-508
SIO_010081: TB927.1.600
subclass of: SO_0000673
so part of: TB927.1.600
location: complement(join(216188..216256,216314..216403,216461..216529,216977..217045,217088..217156,217190..217258,217301..217369,217403..217462,217526..217594,217631..217699))
location: region:216188-217699:-1
so has part: feature:217631-217699:-1:exon
so has part: feature:217526-217594:-1:exon
so has part: feature:217403-217462:-1:exon
so has part: feature:217301-217369:-1:exon
so has part: feature:217190-217258:-1:exon
so has part: feature:217088-217156:-1:exon
so has part: feature:216977-217045:-1:exon
so has part: feature:216461-216529:-1:exon
so has part: feature:216314-216403:-1:exon
so has part: feature:216188-216256:-1:exon

position:216188:-1
position: 216188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217699:-1
position: 217699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217631-217699:-1:exon

position:217631:-1
position: 217631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:217526-217594:-1:exon

position:217526:-1
position: 217526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217594:-1
position: 217594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:217403-217462:-1:exon

position:217403:-1
position: 217403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217462:-1
position: 217462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:217301-217369:-1:exon

position:217301:-1
position: 217301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217369:-1
position: 217369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:217190-217258:-1:exon

position:217190:-1
position: 217190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217258:-1
position: 217258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:217088-217156:-1:exon

position:217088:-1
position: 217088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217156:-1
position: 217156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:216977-217045:-1:exon

position:216977:-1
position: 216977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217045:-1
position: 217045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:216461-216529:-1:exon

position:216461:-1
position: 216461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216529:-1
position: 216529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:216314-216403:-1:exon

position:216314:-1
position: 216314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216403:-1
position: 216403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:216188-216256:-1:exon

position:216256:-1
position: 216256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.600
old locus tag: Tb927.1.600
note: One WCS,TP3D18 and TP7E4 call T, Two WCS and TP20A12 call C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.600
SIO_010081: TB927.1.600
subclass of: SO_0000673
so part of: TB927.1.600
location: 216875
location: region:216875-216875:1
so has part: feature:216875-216875:1:exon

position:216875:1
position: 216875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216875-216875:1:exon

TB927.1.610
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.610
old locus tag: Tb927.1.610
so part of: sequence
location: complement(<218081..>218989)
location: region:218081-218989:-1
so has part: feature:218081-218989:-1:exon
subclass of: SO_0000010

4357144
type: Gene
SIO_000068: ncbigene

position:218081:-1
position: 218081
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:218989:-1
position: 218989
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218081-218989:-1:exon

TB927.1.610
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.610
old locus tag: Tb927.1.610
product: hypothetical protein, conserved
transcript id: XM_001218763.1
SIO_010081: TB927.1.610
subclass of: SO_0000673
so part of: TB927.1.610
location: complement(<218081..>218989)
location: region:218081-218989:-1
so has part: feature:218081-218989:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218081-218989:-1:exon

TB927.1.610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.610
old locus tag: Tb927.1.610
codon start: 1
product: hypothetical protein, conserved
translation: MCDPLVERFISDIIRDPQAWKRAVTSPDNRCCLLPTSNVIRSLAGPLFRRGCVDNVSSLRFLTTLRRDTLSGGNVQRVSMKRKDLRGPWDHRTRVSEEDQPNILIQLLVRQLERNGFGTSYRKAVYSLLGKQVKEMSKKKRQHDAAATAKTMKLNARRIEHLLMEEYNERKKTCDREGRRRQALVRGFFNKASVVVENEEFIGRRTIFQDALDECFAIKTLMEGETQKLTGIPPEHQRNYFAIQQKEKHERECLLARFETQRRAIYLQLQHDIKNSIKSEIRRIMRREKHIEELYKKHGCGK
SIO_010081: TB927.1.610
subclass of: SO_0000673
so part of: TB927.1.610
location: complement(218081..218989)
location: region:218081-218989:-1
so has part: feature:218081-218989:-1:exon

XP_001218764.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:218081-218989:-1:exon

TB927.1.620
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.620
old locus tag: Tb927.1.620
so part of: sequence
location: complement(<219175..>219492)
location: region:219175-219492:-1
so has part: feature:219175-219492:-1:exon
subclass of: SO_0000010

4357145
type: Gene
SIO_000068: ncbigene

position:219175:-1
position: 219175
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:219492:-1
position: 219492
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219175-219492:-1:exon

TB927.1.620
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.620
old locus tag: Tb927.1.620
product: hypothetical protein, unlikely
transcript id: XM_001218764.1
SIO_010081: TB927.1.620
subclass of: SO_0000673
so part of: TB927.1.620
location: complement(<219175..>219492)
location: region:219175-219492:-1
so has part: feature:219175-219492:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:219175-219492:-1:exon

TB927.1.620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.620
old locus tag: Tb927.1.620
codon start: 1
product: hypothetical protein, unlikely
translation: MKLKSERKGEKRGVEGGRPLLVTSAFTFFFLTTRACTRRGDIKKKREEGKGKGIPRGLVCCQSLIPLAVLHDGFTSAETPPFGAPALPPEQNKRACIVAGLFFFF
SIO_010081: TB927.1.620
subclass of: SO_0000673
so part of: TB927.1.620
location: complement(219175..219492)
location: region:219175-219492:-1
so has part: feature:219175-219492:-1:exon

XP_001218765.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:219175-219492:-1:exon

TB927.1.620
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.620
old locus tag: Tb927.1.620
note: Signal anchor predicted for Tb927.1.620 by SignalP 2.0 HMM (Signal peptide probabilty 0.258, signal anchor probability 0.702) with cleavage site probability 0.170 between residues 35 and 36
SIO_010081: TB927.1.620
subclass of: SO_0000673
so part of: TB927.1.620
location: complement(219384..219492)
location: region:219384-219492:-1
so has part: feature:219384-219492:-1:exon

position:219384:-1
position: 219384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219384-219492:-1:exon

TB927.1.630
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.630
old locus tag: Tb927.1.630
so part of: sequence
location: complement(<219568..>220083)
location: region:219568-220083:-1
so has part: feature:219568-220083:-1:exon
subclass of: SO_0000010

4357146
type: Gene
SIO_000068: ncbigene

position:219568:-1
position: 219568
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:220083:-1
position: 220083
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219568-220083:-1:exon

TB927.1.630
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.630
old locus tag: Tb927.1.630
product: anti-silencing protein ASF 1 like protein, putative
transcript id: XM_001218765.1
SIO_010081: TB927.1.630
subclass of: SO_0000673
so part of: TB927.1.630
location: complement(<219568..>220083)
location: region:219568-220083:-1
so has part: feature:219568-220083:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:219568-220083:-1:exon

TB927.1.630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.630
old locus tag: Tb927.1.630
codon start: 1
product: anti-silencing protein ASF 1 like protein, putative
translation: MSIQPIVQLLEIELIGDNPSSYTQPMHWRMRLEALEALDDTISIAFVWVGSAASPNHDQVLDSFDVGPLAQGVTEFTMECDPPQVELVPTQEVLGVTILVISFQYREQEFLRVGYYTQVAYFDGRMNNCPPPVPQVELMGRFIAMPRPTVTVTPIAWNGGPSEGREALEPR
SIO_010081: TB927.1.630
subclass of: SO_0000673
so part of: TB927.1.630
location: complement(219568..220083)
location: region:219568-220083:-1
so has part: feature:219568-220083:-1:exon

XP_001218766.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF6
type: GOA
SIO_000068: goa

IPR006818
type: InterPro
SIO_000068: interpro

Q4GZF6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:219568-220083:-1:exon

TB927.1.640
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
so part of: sequence
location: complement(<220727..>225673)
location: region:220727-225673:-1
so has part: feature:220727-225673:-1:exon
subclass of: SO_0000010

4357147
type: Gene
SIO_000068: ncbigene

position:220727:-1
position: 220727
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:225673:-1
position: 225673
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220727-225673:-1:exon

TB927.1.640
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
product: hypothetical protein, conserved
transcript id: XM_001218766.1
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: complement(<220727..>225673)
location: region:220727-225673:-1
so has part: feature:220727-225673:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:220727-225673:-1:exon

TB927.1.640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
codon start: 1
product: hypothetical protein, conserved
translation: MSHKKGRQGSNSGARQNSDTPQRNRTKCRSDAPKRQRSRSGESVQGKSPLQERETRIQPRRDRTYGTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKPITVSESSLQVARARMNTENGQESTAVQGNSTDVPTLFVSAAGKTVTVSESSLQVASANAASSAKPISGAGASLSKRTPRTHRKSASSSPLSSSKLARKPFVVPFAKNKGAVAKGVGEAVPSASHMPSSEGEGSEVGRTPRHLSFDIFTFRSLSMTVPPSIDEIVRGNFLFKQFGCSPELLKLLEIPAECEFIPSANFRKAMLTLGASPRGCPDAWCLQMLTSTLLKLRGLTLHIDPPLPVFSVAHTLLHMCFKYNHEYVEGKRPALRLIAEGDVQAASLVVVWVVSVSFEERLTPHTCTAVVSDGFYHVKVSLDIPLTNLVRNGTLRCGQKIVTCGARMLRRDCCSPLECKDEVLLSINYNCTQPVGPSSPLGLYHTCLPTLLPSAMDMLGGLVPCLKGRVERVLPPFFLEKTFKGARTGDTRGSTGGALKIVRSLLAQLSFQECMARGAVAPFEGKSDRQLSRLTSFLLSCERQGDVLLQIWDDCGANCPAGDLEEHSCDFPPEGAEIVVFSVTPSRFRPGHPFQRTTVLYSRSPLRYSIVSPPRKGFVRQPLRSAEDVSPKTETGDAIDFAGLFVGTKSVDTVNSHIIVALNDGWKPGCVPASYFMIDVPHATGSKEIVLALPSIPFTPVIVQNASFIRCAEDLGPDCIHVLANEYTKVYSRPAEPLLRGVVESLGKIRGMAKSSRPIIARSEELLRMRTLSEEARADICRLSRELVGGDELPNPAATAQPSPRYQLRQEASTPVEQSITVSETSAARTLSSEEEQVEDLRSSNVKASPRRHVFGNIVGFRLLKCQGSDKPECIEILGGRPSTLVSGSGKFVVSPSDFSQSLVYFEADIQFGATAKQCAQTKVRSPSVLHSLLEQCIPLKRACALTVDEIFADYYLARIKQLEDWQTPHEECWWRLLTQSHVVEITSDVSGTPPEELVGLQWLSNEWKMLLNILSGSLKHCLFMFSVEGSEMVRATFIKEQCSVADLMRE
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: complement(220727..225673)
location: region:220727-225673:-1
so has part: feature:220727-225673:-1:exon

XP_001218767.1
type: Protein
SIO_000068: ncbiprotein

Q4GZF5
type: GOA
SIO_000068: goa

IPR012340
type: InterPro
SIO_000068: interpro

IPR015187
type: InterPro
SIO_000068: interpro

IPR015525
type: InterPro
SIO_000068: interpro

Q4GZF5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:220727-225673:-1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4 and TPB15A2 call A, One WCS read calls G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 222452
location: region:222452-222452:1
so has part: feature:222452-222452:1:exon

position:222452:1
position: 222452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222452-222452:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4,TPB15A20 and TP3D18 reads call T, One WCS read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 222533
location: region:222533-222533:1
so has part: feature:222533-222533:1:exon

position:222533:1
position: 222533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222533-222533:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4 and TPB15A20 reads call T, One TP20A12 read calls C; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 222944
location: region:222944-222944:1
so has part: feature:222944-222944:1:exon

position:222944:1
position: 222944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222944-222944:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TPB15A20 and TP7E4 reads call C, One WCS and one TP20A12 read call T; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223328
location: region:223328-223328:1
so has part: feature:223328-223328:1:exon

position:223328:1
position: 223328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223328-223328:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TPB15A20 and TP7E4 reads call A, One WCS and one TP20A12 read call C; type 1 (single nucleotide substitutions); mis-sense mutation at 781 in Tb927.1.640 V -> G
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223332
location: region:223332-223332:1
so has part: feature:223332-223332:1:exon

position:223332:1
position: 223332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223332-223332:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TPB15A20 and TP7E4 reads call C, One WCS and one TP20A12 read call A; type 1 (single nucleotide substitutions); mis-sense mutation at 780 in Tb927.1.640 G -> V
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223335
location: region:223335-223335:1
so has part: feature:223335-223335:1:exon

position:223335:1
position: 223335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223335-223335:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4 and TPB15A20 call C, One WCS and TP20A12 call A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223445
location: region:223445-223445:1
so has part: feature:223445-223445:1:exon

position:223445:1
position: 223445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223445-223445:1:exon

TB927.1.640
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: 132 bp repeat
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: complement(223506..225475)
location: region:223506-225475:-1
so has part: feature:223506-225475:-1:exon

position:223506:-1
position: 223506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225475:-1
position: 225475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223506-225475:-1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4,TP3D18 and TPB15A20 reads call C, One WCS and TP20A12 call T; type 1 (single nucleotide substitutions); mis-sense mutation at 711 in Tb927.1.640 V -> I
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223543
location: region:223543-223543:1
so has part: feature:223543-223543:1:exon

position:223543:1
position: 223543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223543-223543:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4,TP3D18 and TPB15A20 reads call T, One WCS and TP20A12 call G; type 1 (single nucleotide substitutions); mis-sense mutation at 710 in Tb927.1.640 T -> P
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223546
location: region:223546-223546:1
so has part: feature:223546-223546:1:exon

position:223546:1
position: 223546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223546-223546:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4,TPB15A20 and TP3D18 reads call A, One WCS and TP20A12 call G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223580
location: region:223580-223580:1
so has part: feature:223580-223580:1:exon

position:223580:1
position: 223580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223580-223580:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TPB15A20,TP7E4 and TP3D18 reads call G, One WCS and TP20A12 call A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223688
location: region:223688-223688:1
so has part: feature:223688-223688:1:exon

position:223688:1
position: 223688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223688-223688:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TPB15A20,TP7E4 and TP3D18 reads call G, One WCS and TP20A12 call A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223820
location: region:223820-223820:1
so has part: feature:223820-223820:1:exon

position:223820:1
position: 223820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223820-223820:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TPB15A20,TP3D18 and TP7E4 reads call T, Two TP20A12 reads call C; type 1 (single nucleotide substitutions); mis-sense mutation at 602 in Tb927.1.640 T -> A
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 223870
location: region:223870-223870:1
so has part: feature:223870-223870:1:exon

position:223870:1
position: 223870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223870-223870:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS and TP7E4 reads call C, TP20A12 reads call T; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 224009
location: region:224009-224009:1
so has part: feature:224009-224009:1:exon

position:224009:1
position: 224009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224009-224009:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4 and TPB15A20 reads call A, One TP20A12 read calls G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 224108
location: region:224108-224108:1
so has part: feature:224108-224108:1:exon

position:224108:1
position: 224108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224108-224108:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of TP7E4 and TPB12C6 reads call G, One TP3D18 read calls A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 224348
location: region:224348-224348:1
so has part: feature:224348-224348:1:exon

position:224348:1
position: 224348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224348-224348:1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP3D18,TP7E4 and TPB15A20 reads call G, One TP3D18 read calls A; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 225140
location: region:225140-225140:1
so has part: feature:225140-225140:1:exon

position:225140:1
position: 225140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225140-225140:1:exon

TB927.1.640
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: 132 bp repeat
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: complement(225344..225475)
location: region:225344-225475:-1
so has part: feature:225344-225475:-1:exon

position:225344:-1
position: 225344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225344-225475:-1:exon

TB927.1.640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.640
old locus tag: Tb927.1.640
note: Majority of WCS,TP7E4,TP20A12 and TPB15A20 reads call A, One TP3D18 read calls G; type 1 (single nucleotide substitutions); silent mutation in Tb927.1.640
SIO_010081: TB927.1.640
subclass of: SO_0000673
so part of: TB927.1.640
location: 225404
location: region:225404-225404:1
so has part: feature:225404-225404:1:exon

position:225404:1
position: 225404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225404-225404:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(225996..226001)
location: region:225996-226001:-1
so has part: feature:225996-226001:-1:region

position:225996:-1
position: 225996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226001:-1
position: 226001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225996-226001:-1:region

TB927.1.650
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.650
old locus tag: Tb927.1.650
so part of: sequence
location: complement(<226021..>226620)
location: region:226021-226620:-1
so has part: feature:226021-226620:-1:exon
subclass of: SO_0000010

4357148
type: Gene
SIO_000068: ncbigene

position:226021:-1
position: 226021
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:226620:-1
position: 226620
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226021-226620:-1:exon

TB927.1.650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.650
old locus tag: Tb927.1.650
product: hypothetical protein, conserved
transcript id: XM_001218767.1
SIO_010081: TB927.1.650
subclass of: SO_0000673
so part of: TB927.1.650
location: complement(<226021..>226620)
location: region:226021-226620:-1
so has part: feature:226021-226620:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:226021-226620:-1:exon

TB927.1.650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.650
old locus tag: Tb927.1.650
codon start: 1
product: hypothetical protein, conserved
translation: MDEIKWPLRLLQILRNHLEQVDHPHEPRTLPIAAKCGQGGVLAFLTDVDDDVRRRTGASECITACCRGLVLDMIEQCCTLLFLSSKERRVINMAAVQREKRVVARGVGKRRRGDQGETTEETAIGETDNSQRKCAAVLPLEYLLRLFVALPSLLAHYDKLGGSTMPAAFKQPLWNYVNAVLDIMKDMTFLDPSEYIPLR
SIO_010081: TB927.1.650
subclass of: SO_0000673
so part of: TB927.1.650
location: complement(226021..226620)
location: region:226021-226620:-1
so has part: feature:226021-226620:-1:exon

XP_001218768.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:226021-226620:-1:exon

TB927.1.660
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.660
old locus tag: Tb927.1.660
so part of: sequence
location: complement(<227413..>227586)
location: region:227413-227586:-1
so has part: feature:227413-227586:-1:exon
subclass of: SO_0000010

4357149
type: Gene
SIO_000068: ncbigene

position:227413:-1
position: 227413
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:227586:-1
position: 227586
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227413-227586:-1:exon

TB927.1.660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.660
old locus tag: Tb927.1.660
product: hypothetical protein, unlikely
transcript id: XM_001218768.1
SIO_010081: TB927.1.660
subclass of: SO_0000673
so part of: TB927.1.660
location: complement(<227413..>227586)
location: region:227413-227586:-1
so has part: feature:227413-227586:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:227413-227586:-1:exon

TB927.1.660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.660
old locus tag: Tb927.1.660
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MKGGEGASDGRVYFLSLRATIPFSERPTLVAFFFFLLFLLFCCVGVKTVYIRIYSGG
SIO_010081: TB927.1.660
subclass of: SO_0000673
so part of: TB927.1.660
location: complement(227413..227586)
location: region:227413-227586:-1
so has part: feature:227413-227586:-1:exon

XP_001218769.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:227413-227586:-1:exon

TB927.1.660
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.660
old locus tag: Tb927.1.660
note: 1 probable transmembrane helix predicted for Tb927.1.660 by TMHMM2.0 at aa 29-51
SIO_010081: TB927.1.660
subclass of: SO_0000673
so part of: TB927.1.660
location: complement(227434..227502)
location: region:227434-227502:-1
so has part: feature:227434-227502:-1:exon

position:227434:-1
position: 227434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227502:-1
position: 227502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227434-227502:-1:exon

TB927.1.660
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.660
old locus tag: Tb927.1.660
note: Signal anchor predicted for Tb927.1.660 by SignalP 2.0 HMM (Signal peptide probabilty 0.022, signal anchor probability 0.978) with cleavage site probability 0.017 between residues 45 and 46
SIO_010081: TB927.1.660
subclass of: SO_0000673
so part of: TB927.1.660
location: complement(227448..227586)
location: region:227448-227586:-1
so has part: feature:227448-227586:-1:exon

position:227448:-1
position: 227448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227448-227586:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS,TP7E4,TP3D18 and TPB15A20 reads call A, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 227712
location: region:227712-227712:1
so has part: feature:227712-227712:1:region

position:227712:1
position: 227712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227712-227712:1:region

TB927.1.670
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.670
old locus tag: Tb927.1.670
so part of: sequence
location: complement(<228043..>229887)
location: region:228043-229887:-1
so has part: feature:228043-229887:-1:exon
subclass of: SO_0000010

4357150
type: Gene
SIO_000068: ncbigene

position:228043:-1
position: 228043
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:229887:-1
position: 229887
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228043-229887:-1:exon

TB927.1.670
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.670
old locus tag: Tb927.1.670
product: hypothetical protein, conserved
transcript id: XM_001218769.1
SIO_010081: TB927.1.670
subclass of: SO_0000673
so part of: TB927.1.670
location: complement(<228043..>229887)
location: region:228043-229887:-1
so has part: feature:228043-229887:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:228043-229887:-1:exon

TB927.1.670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.670
old locus tag: Tb927.1.670
codon start: 1
product: hypothetical protein, conserved
translation: MMQVKLKHFDEGQSWTEKRNSTAAAAAAAAGASAPGGGNSGMPKSFSVCTVDAANASSSAADAEALGRILSGSSPSFVFIHNCNAATRRQLMQLSSVRKFYGITDNIRYEPREPTERGTVTLVRIGMTCESVENVTKELEISNNTNGESEGSTSHSSVASAVKLFMTLQVRSFPGASVTVGMLYMDPGAQPWVRTAALSSIIPLLGSAEVIVICANLLTSTTTLNEEICAACNSYGFADATEDAVEKPVSPGSSASHRDWGLWVKSSKLCVTSCAPSFHEGERCVFTSLMAVVGPRSPAGIAIPQPRSAKSANPRGSPWSPAAPPVITDPAILSAEAGSRTGSVQAIKGGGSAIIERLLQQQQQQQQQFTTRWRASSTCPIKNNDKLTREEQAFDVSSHFTSIQEAVDALNSKTIHWPADFCVVCDTILFSDAVGQGDKRTAFRRYAKEYKNSSTLLAQMIVASGAANNPTTNATAEKSAWLKRALATQNHKSADREEKAGSVSTGPAVKREEEHRVRVWDAAWCTVVYQVTPREMKFNVTHLVGLGKDNLAEAIQFLNARALPKGGKAANGRENPLQNYPYDYALLFSWELQGFWLIAATDVPCDIVACRAAA
SIO_010081: TB927.1.670
subclass of: SO_0000673
so part of: TB927.1.670
location: complement(228043..229887)
location: region:228043-229887:-1
so has part: feature:228043-229887:-1:exon

XP_001218770.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:228043-229887:-1:exon

TB927.1.670
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.670
old locus tag: Tb927.1.670
note: Majority of WCS,TP7E4 and TP3D18 reads call G, Two TP20A12 reads call A
SIO_010081: TB927.1.670
subclass of: SO_0000673
so part of: TB927.1.670
location: 229807
location: region:229807-229807:1
so has part: feature:229807-229807:1:exon

position:229807:1
position: 229807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229807-229807:1:exon

TB927.1.680
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.680
old locus tag: Tb927.1.680
so part of: sequence
location: complement(<230291..>230632)
location: region:230291-230632:-1
so has part: feature:230291-230632:-1:exon
subclass of: SO_0000010

4357151
type: Gene
SIO_000068: ncbigene

position:230291:-1
position: 230291
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:230632:-1
position: 230632
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230291-230632:-1:exon

TB927.1.680
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.680
old locus tag: Tb927.1.680
product: hypothetical protein, unlikely
transcript id: XM_001218770.1
SIO_010081: TB927.1.680
subclass of: SO_0000673
so part of: TB927.1.680
location: complement(<230291..>230632)
location: region:230291-230632:-1
so has part: feature:230291-230632:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:230291-230632:-1:exon

TB927.1.680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.680
old locus tag: Tb927.1.680
codon start: 1
product: hypothetical protein, unlikely
translation: MDEEVVLRGVEDITCRCVYSHVYVYARVCVFGYVLPSSSVVYRGTLAMECTFGVHEKKNKMKKNKCYLRGQTIGTRDTVCGVMCLNIPPRHCYCSFFLFPFYNPFLLYLLLSS
SIO_010081: TB927.1.680
subclass of: SO_0000673
so part of: TB927.1.680
location: complement(230291..230632)
location: region:230291-230632:-1
so has part: feature:230291-230632:-1:exon

XP_001218771.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:230291-230632:-1:exon

TB927.1.680
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.680
old locus tag: Tb927.1.680
note: Majority of WCS,TP3D18 and TPB15A20 reads call T, One TP20A12 read calls C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.680
subclass of: SO_0000673
so part of: TB927.1.680
location: 230491
location: region:230491-230491:1
so has part: feature:230491-230491:1:exon

position:230491:1
position: 230491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230491-230491:1:exon

TB927.1.680
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.680
old locus tag: Tb927.1.680
note: Majority of WCS,TP3D18,TP7E4 and TPB15A20 reads call A, One WCS read and TP20A12 call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.680
subclass of: SO_0000673
so part of: TB927.1.680
location: 230548
location: region:230548-230548:1
so has part: feature:230548-230548:1:exon

position:230548:1
position: 230548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230548-230548:1:exon

TB927.1.690
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.690
old locus tag: Tb927.1.690
so part of: sequence
location: complement(<230694..>231425)
location: region:230694-231425:-1
so has part: feature:230694-231425:-1:exon
subclass of: SO_0000010

4357160
type: Gene
SIO_000068: ncbigene

position:230694:-1
position: 230694
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:231425:-1
position: 231425
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230694-231425:-1:exon

TB927.1.690
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.690
old locus tag: Tb927.1.690
product: hypothetical protein, conserved
transcript id: XM_001218771.1
SIO_010081: TB927.1.690
subclass of: SO_0000673
so part of: TB927.1.690
location: complement(<230694..>231425)
location: region:230694-231425:-1
so has part: feature:230694-231425:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:230694-231425:-1:exon

TB927.1.690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.690
old locus tag: Tb927.1.690
codon start: 1
product: hypothetical protein, conserved
translation: MYPSFVSELSRTPGDVVIEPYSFLEHLKEGTKYEMIVFPDAFEIPQGSWAAYRSAQRKGQEEVVEPSGGEGPLITPPHAGCSSGFPLTRTKQSRLWNSVDRRISLQRKAGQMLVQFGKSFAGNSEILAQHPSRERRRREEVWSIISAKRLASDMPTLMRHAEHRMQCLDRLRDRKEQRWELERAAGTGCQPASARFPLPDLKRKVCVLSASGSSDREGWEAREGQTSGRWHDSASIVSSALVK
SIO_010081: TB927.1.690
subclass of: SO_0000673
so part of: TB927.1.690
location: complement(230694..231425)
location: region:230694-231425:-1
so has part: feature:230694-231425:-1:exon

XP_001218772.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:230694-231425:-1:exon

TB927.1.690
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.690
old locus tag: Tb927.1.690
note: Majority of WCS,TPB15A20,TP3D18 and TP7E4 reads call C, One WCS read calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 216 in Tb927.1.690 R -> K
SIO_010081: TB927.1.690
subclass of: SO_0000673
so part of: TB927.1.690
location: 230779
location: region:230779-230779:1
so has part: feature:230779-230779:1:exon

position:230779:1
position: 230779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230779-230779:1:exon

TB927.1.700
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
gene: PGKC
locus tag: TB927.1.700
old locus tag: Tb927.1.700
so part of: sequence
location: complement(231710..>233826)
location: region:231710-233826:-1
so has part: feature:231710-233826:-1:exon
subclass of: SO_0000010

4357161
type: Gene
SIO_000068: ncbigene

position:231710:-1
position: 231710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233826:-1
position: 233826
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231710-233826:-1:exon

TB927.1.700
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
gene: PGKC
locus tag: TB927.1.700
old locus tag: Tb927.1.700
product: phosphoglycerate kinase
transcript id: XM_001218772.2
SIO_010081: TB927.1.700
subclass of: SO_0000673
so part of: TB927.1.700
location: complement(231710..>233826)
location: region:231710-233826:-1
so has part: feature:231710-233826:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:231710-233826:-1:exon

TB927.1.700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
gene: PGKC
locus tag: TB927.1.700
old locus tag: Tb927.1.700
EC number: 2.7.2.3
codon start: 1
product: phosphoglycerate kinase
translation: MTLNEKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQADKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKEREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVAVLDEKSAVVSYASAGTGTLSNRWSSL
SIO_010081: TB927.1.700
subclass of: SO_0000673
so part of: TB927.1.700
location: complement(232504..233826)
location: region:232504-233826:-1
so has part: feature:232504-233826:-1:exon

XP_001218773.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG4
type: GOA
SIO_000068: goa

IPR001576
type: InterPro
SIO_000068: interpro

IPR015824
type: InterPro
SIO_000068: interpro

IPR015901
type: InterPro
SIO_000068: interpro

IPR015911
type: InterPro
SIO_000068: interpro

IPR027250
type: InterPro
SIO_000068: interpro

Q4GZG4
type: UniProt
SIO_000068: uniprot

position:232504:-1
position: 232504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232504-233826:-1:exon

TB927.1.710
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
so part of: sequence
location: complement(234043..>235438)
location: region:234043-235438:-1
so has part: feature:234043-235438:-1:exon
subclass of: SO_0000010

4357162
type: Gene
SIO_000068: ncbigene

position:234043:-1
position: 234043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235438:-1
position: 235438
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234043-235438:-1:exon

TB927.1.710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
product: phosphoglycerate kinase
transcript id: XM_001218773.2
SIO_010081: TB927.1.710
subclass of: SO_0000673
so part of: TB927.1.710
location: complement(234043..>235438)
location: region:234043-235438:-1
so has part: feature:234043-235438:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234043-235438:-1:exon

TB927.1.710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
EC number: 2.7.2.3
codon start: 1
product: phosphoglycerate kinase
translation: MSLKERKSINECDLKGKKVLIRVDFNVPLDDGNITNDYRIRSALPAVQKVLTEGGSCVLMSHLGRPKGVSMAEGKELRSTGGIPGFEQKATLKPVAKRLSELLSRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKSTEEREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGHGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGISMCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDEKE
SIO_010081: TB927.1.710
subclass of: SO_0000673
so part of: TB927.1.710
location: complement(234176..235438)
location: region:234176-235438:-1
so has part: feature:234176-235438:-1:exon

XP_001218774.1
type: Protein
SIO_000068: ncbiprotein

Q4GZG3
type: GOA
SIO_000068: goa

Q4GZG3
type: UniProt
SIO_000068: uniprot

position:234176:-1
position: 234176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234176-235438:-1:exon

TB927.1.710
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
note: Majority of WCS,TP7E4,TP20A12 and TPB15A20 reads call T, One WCS read calls C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.710
subclass of: SO_0000673
so part of: TB927.1.710
location: 234296
location: region:234296-234296:1
so has part: feature:234296-234296:1:exon

position:234296:1
position: 234296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234296-234296:1:exon

TB927.1.710
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
note: Majority of WCS,TP7E4,TP20A12 and TPB15A20 reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.710
subclass of: SO_0000673
so part of: TB927.1.710
location: 234305
location: region:234305-234305:1
so has part: feature:234305-234305:1:exon

position:234305:1
position: 234305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234305-234305:1:exon

TB927.1.710
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
note: Majority of WCS,TP7E4,TP20A12 and TPB15A20 reads call G, One WCS read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 377 in Tb927.1.710 D -> E
SIO_010081: TB927.1.710
subclass of: SO_0000673
so part of: TB927.1.710
location: 234308
location: region:234308-234308:1
so has part: feature:234308-234308:1:exon

position:234308:1
position: 234308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234308-234308:1:exon

TB927.1.710
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
gene: PGKB
locus tag: TB927.1.710
old locus tag: Tb927.1.710
note: Majority of WCS,TP7E4, TP20A12 and TPB15A20 reads call T, One WCS read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 367 in Tb927.1.710 H -> R
SIO_010081: TB927.1.710
subclass of: SO_0000673
so part of: TB927.1.710
location: 234339
location: region:234339-234339:1
so has part: feature:234339-234339:1:exon

position:234339:1
position: 234339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234339-234339:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: splice acceptor site (gene PGKB)
so part of: sequence
location: 235553
location: region:235553-235553:1
so has part: feature:235553-235553:1:region

position:235553:1
position: 235553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235553-235553:1:region

TB927.1.720
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
gene: PGKA
locus tag: TB927.1.720
old locus tag: Tb927.1.720
so part of: sequence
location: complement(235665..>237299)
location: region:235665-237299:-1
so has part: feature:235665-237299:-1:exon
subclass of: SO_0000010

4357163
type: Gene
SIO_000068: ncbigene

position:235665:-1
position: 235665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237299:-1
position: 237299
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235665-237299:-1:exon

TB927.1.720
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
gene: PGKA
locus tag: TB927.1.720
old locus tag: Tb927.1.720
product: phosphoglycerate kinase
transcript id: XM_001218774.2
SIO_010081: TB927.1.720
subclass of: SO_0000673
so part of: TB927.1.720
location: complement(235665..>237299)
location: region:235665-237299:-1
so has part: feature:235665-237299:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235665-237299:-1:exon

TB927.1.720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
gene: PGKA
locus tag: TB927.1.720
old locus tag: Tb927.1.720
EC number: 2.7.2.3
codon start: 1
product: phosphoglycerate kinase
translation: MSTAPNAKNNISLKKSVGDVWPLTAKRVLMRVDFNVPMQNGHITNDYRIRAAIPTIRRVIDQGGICILLSHLGRPRGVSMVAGVRDIRRRYHEAQFHDNKGKTAFFSVLPGEEKVKILAKSSAREEATHISPEVKSGKTMLFARLPEDEKKSLLMQYLNENKDSALPQMSVSAGYEEQYSLRPVAVRLAELLGQHVYFAHDCLDARVEVSRLKRGNVMLLENVRFYSEENGENAEEREAMAKILASYGDVYISDAFGAAHRDSATMTGIPKILGHGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSEKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQIILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTQKRGLMSIIGGGESAGAAELCGEAARISHVSTGGGASLELLEGKTLPGVAVLDDKE
SIO_010081: TB927.1.720
subclass of: SO_0000673
so part of: TB927.1.720
location: complement(235770..237299)
location: region:235770-237299:-1
so has part: feature:235770-237299:-1:exon

XP_001218775.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE6
type: GOA
SIO_000068: goa

Q4GZE6
type: UniProt
SIO_000068: uniprot

position:235770:-1
position: 235770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235770-237299:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: splice acceptor site II (gene PGKA)
so part of: sequence
location: 237362
location: region:237362-237362:1
so has part: feature:237362-237362:1:region

position:237362:1
position: 237362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237362-237362:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
note: splice acceptor site I (gene PGKA)
so part of: sequence
location: 237504
location: region:237504-237504:1
so has part: feature:237504-237504:1:region

position:237504:1
position: 237504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237504-237504:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: complement(237603..237608)
location: region:237603-237608:-1
so has part: feature:237603-237608:-1:region

position:237603:-1
position: 237603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237608:-1
position: 237608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237603-237608:-1:region

TB927.1.730
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.730
old locus tag: Tb927.1.730
so part of: sequence
location: complement(<237834..>239543)
location: region:237834-239543:-1
so has part: feature:237834-239543:-1:exon
subclass of: SO_0000010

4357164
type: Gene
SIO_000068: ncbigene

position:237834:-1
position: 237834
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:239543:-1
position: 239543
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237834-239543:-1:exon

TB927.1.730
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.730
old locus tag: Tb927.1.730
product: hypothetical protein, conserved
transcript id: XM_001218775.1
SIO_010081: TB927.1.730
subclass of: SO_0000673
so part of: TB927.1.730
location: complement(<237834..>239543)
location: region:237834-239543:-1
so has part: feature:237834-239543:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:237834-239543:-1:exon

TB927.1.730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.730
old locus tag: Tb927.1.730
codon start: 1
product: hypothetical protein, conserved
translation: MWRLLRRACVKKFPGGQTASTTFGCSVKRGATTIGMSDDPPAADPILFDAPVASRVVGREREIMQLWQNLLAGRHCQVIAGLDGIGKTTIAVEFCSRARRSGRFTCVHWFDWDDSLESHLLQFFQSMKGRKEKDVLLVVDGTPNPQVVLQLIPDHPNVYALVTSSADPVGNLKIPVLKAGSFTEVDADQFLQGINVEERATSSTRDVMHAVCRVPILMHLACCLMESGSVSPEELRSLLLAKGVGAEGTISVSHALNVFLDVALNELESHFPDGTKQLRTLAFFDARNIPYAVVDSVVGSERGEEFVMFLTGLGICGQRWEDSSLFIHSCIADALLTGADDAILLRSAEVLQALWPRRWRSAGSSTAHELVRHTTALLKWFNARKLSLSNDLLLGLDRSATFLALNEGKELRKAAEFWIRVVNSDQHADRRTTEAVRVGRECGRLLHFLRDQRASSVLQYAYHLGVAVYGQQSPEAALILGCYAPYLPSSHETVQLLCQSAAALKNRLGCAEAVLGREEERMLLETVFVLYMCQGQMLQELGELVPDSLWESLQSVEKELKGGKHSKLK
SIO_010081: TB927.1.730
subclass of: SO_0000673
so part of: TB927.1.730
location: complement(237834..239543)
location: region:237834-239543:-1
so has part: feature:237834-239543:-1:exon

XP_001218776.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE5
type: GOA
SIO_000068: goa

IPR027417
type: InterPro
SIO_000068: interpro

Q4GZE5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:237834-239543:-1:exon

TB927.1.740
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.740
old locus tag: Tb927.1.740
so part of: sequence
location: complement(<240378..>241685)
location: region:240378-241685:-1
so has part: feature:240378-241685:-1:exon
subclass of: SO_0000010

4357165
type: Gene
SIO_000068: ncbigene

position:240378:-1
position: 240378
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:241685:-1
position: 241685
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:240378-241685:-1:exon

TB927.1.740
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.740
old locus tag: Tb927.1.740
product: hypothetical protein, conserved
transcript id: XM_001218776.1
SIO_010081: TB927.1.740
subclass of: SO_0000673
so part of: TB927.1.740
location: complement(<240378..>241685)
location: region:240378-241685:-1
so has part: feature:240378-241685:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:240378-241685:-1:exon

TB927.1.740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.740
old locus tag: Tb927.1.740
codon start: 1
product: hypothetical protein, conserved
translation: MFVRRLVRLCVSRLPNGVVLQGKLNPRRPDLLLEGSVKMPDGRAYSGVFDEEYGFPLKGSRLEDDGDLYCGEFNTKWQRHGEGEAWLADGTHYKGRFCEDDLVEGTVCIPNGTTETVFVGTLENESFVRGKLTQHDFTYEGEFHNNKPHGRGRLSFTTGAEQEGTFFAGKLHGTNCKMKLDGGFVYVGEFVDGCIRRGQLFAPTYIYDGEFNEHGRAHGEGTQTYLANEPRLLFTGIWDSGALVRGTCSDEYGNPVDWQDNHELQTKVFSEEGGASAVAMNCYSAAKLKDADRLHRDMNTSYAKDAERVSRNSGHYPSKMDLGYEGGIRQEQDAFERASRKCVEDTRRAREAMETKGEDINRLCDNVIGEASIEVNPNMAKMHFIKQEGAQQLAAEHVDEQFERFMKSFDRPTDVGASRRLIDCNAPWKAFTSKG
SIO_010081: TB927.1.740
subclass of: SO_0000673
so part of: TB927.1.740
location: complement(240378..241685)
location: region:240378-241685:-1
so has part: feature:240378-241685:-1:exon

XP_001218777.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE4
type: GOA
SIO_000068: goa

IPR003409
type: InterPro
SIO_000068: interpro

Q4GZE4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:240378-241685:-1:exon

TB927.1.750
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.750
old locus tag: Tb927.1.750
so part of: sequence
location: complement(<242278..>245925)
location: region:242278-245925:-1
so has part: feature:242278-245925:-1:exon
subclass of: SO_0000010

4357166
type: Gene
SIO_000068: ncbigene

position:242278:-1
position: 242278
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:245925:-1
position: 245925
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242278-245925:-1:exon

TB927.1.750
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.750
old locus tag: Tb927.1.750
product: hypothetical protein, conserved
transcript id: XM_001218777.1
SIO_010081: TB927.1.750
subclass of: SO_0000673
so part of: TB927.1.750
location: complement(<242278..>245925)
location: region:242278-245925:-1
so has part: feature:242278-245925:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242278-245925:-1:exon

TB927.1.750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.750
old locus tag: Tb927.1.750
codon start: 1
product: hypothetical protein, conserved
translation: MAMRSNFLCRLEVYRGPNECTLRSFSIEEAPSTILEMVNLLKSYDLRLQHGTFELTAAHGQDEAPRKLLSDDDVVAFFSVHSCPCFVFTAVIDHCDSGVGSSMLVDDPLVLLSIQHSDGGVPTTKRFIPPRREIWKALLVAVRGAIQQVLLPGQQLTLFSTEGNGKALTEICSEEAAALLIRSCMAQRSVCHLTYNIGRGDTGAKVVGATLAEVDKKEDKNKVPISTKNDNDQLPTCAVVNARSKNMDQNLPPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAETVKPVAVPEPAKAEIVEKPNLSLAVSVFLKDRDPNAFAMKKSPALRDSEIGSGRLLEPLFTKDVLVGEGNAASRPWNNAKVLPTGFKGGDGDAVTAKNGKGADESPLTSKNATECISGKKNCSDVEEELPNEVVVEVACSLEKKAPVRFFLTWKKASPKVFESFRNECLNALHLTDMDNIIIYDSNGVPLCNPSGVTAMVGEAIRKKRSCINVTAVRGHPCTSGLPLQCLFTWGTQQVMRALVLRPGCALEDMRSALAEECGLKEKDMGELSFRLVERGELDDMELTPDNVYKELKRVAENSCVVRIAILDRRRTSLIAFVVRTLCDAASAFAAEVEHVFGGHFTEMDVVPILTRCCDLSPLEGDVKRYVDAVISNLEGSQVLRSDNVVKAVLDPVSICGEEVALSFLNRCIAVTELMSSHRPFEVLMRFFRRLYRSIEYPERTESGVPLNVVTRQLAYAGLSDARWLLFRDQPFSSVVHEKDFVEMLQRVYAGNPSLVCRVAVACRLSGISSLKSRRVMAKEERDVRRQHCRKEIAHAFDGIRPDEVMAYIHHYRLHGKPNHCCLLGTVSTLLANCSERLSSQWFVERVTQRCSVTMETMLQNFEDAQIPLPLLYQLCWDVLRPELHHLTLLPESHVASAFAYWAMFAVQLLCINRNLEFPPVPLVDLKEFTWVVPEKASADTVTDEADGAVAIALPTPQPAGVAKKKIKYKYSYLCHDLRRDQRFLPMIR
SIO_010081: TB927.1.750
subclass of: SO_0000673
so part of: TB927.1.750
location: complement(242278..245925)
location: region:242278-245925:-1
so has part: feature:242278-245925:-1:exon

XP_001218778.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:242278-245925:-1:exon

TB927.1.750
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.750
old locus tag: Tb927.1.750
note: Majority of WCS and TP7E4 reads call A, One TP20A12 read calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 902 in Tb927.1.750 S -> P
SIO_010081: TB927.1.750
subclass of: SO_0000673
so part of: TB927.1.750
location: 243222
location: region:243222-243222:1
so has part: feature:243222-243222:1:exon

position:243222:1
position: 243222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243222-243222:1:exon

TB927.1.750
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
locus tag: TB927.1.750
old locus tag: Tb927.1.750
note: 42 bp repeat (MS42); highly polymorphic between isolates. Array contains approx. 17.8 repeat units; highly conserved with 9 purine and 1 pyrimidine substitution
SIO_010081: TB927.1.750
subclass of: SO_0000673
so part of: TB927.1.750
location: complement(244429..245176)
location: region:244429-245176:-1
so has part: feature:244429-245176:-1:exon

position:244429:-1
position: 244429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245176:-1
position: 245176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244429-245176:-1:exon

TB927.1.760
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.760
old locus tag: Tb927.1.760
so part of: sequence
location: complement(<246646..>248931)
location: region:246646-248931:-1
so has part: feature:246646-248931:-1:exon
subclass of: SO_0000010

4357167
type: Gene
SIO_000068: ncbigene

position:246646:-1
position: 246646
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:248931:-1
position: 248931
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246646-248931:-1:exon

TB927.1.760
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.760
old locus tag: Tb927.1.760
product: hypothetical protein, conserved
transcript id: XM_001218778.1
SIO_010081: TB927.1.760
subclass of: SO_0000673
so part of: TB927.1.760
location: complement(<246646..>248931)
location: region:246646-248931:-1
so has part: feature:246646-248931:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:246646-248931:-1:exon

TB927.1.760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.760
old locus tag: Tb927.1.760
codon start: 1
product: hypothetical protein, conserved
translation: MFAPPECTIEGELPLKCESPFSSVYRDPQGAVWTVDSTSTRVFRFPRVVVCPNSAPGHSSPAPKGSDELDQPYFDCSEENDRVLSVVFTTVRDDERFFVCIATAGGCIAFGVADSFEGDIRRVQLGVEVTALAAAPCTDGASAKDCDDGNEDLLETTSLCSSGYGGGVLVSSFDGTFSEVMLLCWVSGSCAADLPQRDSDVDVVGLFRVQGRVCGLMVDEVGDRVVTVTQRGDVDVWNLRANVDETHTFGMPAYLASEYGEPCCSILLGGYQLWIGTSKGFVIVFFLQPLGNVVSNDNSPCISHTKCNVDESKGSRGAPHRVWHAHGATAVRSLLVMSLGRLVWSYGADQQANVWDTTELLLRGSLQFPCGDLSELCCGGQYLDTSVWGVCSESGKLTQFRVKELLFGGSRGLAAALCGPTSNEQMERCNVLSSFVSYLCSLLNPTSEQPHASSTMITAATDESNCSYGLSLNGDGDTDTDKYETDTLCLPPHMEVVVKQMEQCYPASHLLPHAVTSLVKGQRIVSQLTANERRGSATFLDGLRHLQRQHQQDSYDLKALRLQVGEERKKRQDAEARLAERENETHEYQQRLERLTVLQEECEKRTATLERQLKSAKKAAAVTSAEATRLCEMEANLHEAHCTVQGLQERMESLVRERQEYLRVSQENKSLRAQVRRFELKQQAAKRALANFIATQDHIVDSLGNILLVDEGGDHRRAHADIDNLYEWLCRNIENQQEFLAGLKRSYETQAGGVAEDRIGQ
SIO_010081: TB927.1.760
subclass of: SO_0000673
so part of: TB927.1.760
location: complement(246646..248931)
location: region:246646-248931:-1
so has part: feature:246646-248931:-1:exon

XP_001218779.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:246646-248931:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call 11 G;Two WCS reads call 8 G; type 3 (insertion/deletion of 3 nucleotides)
so part of: sequence
location: 248975
location: region:248975-248975:1
so has part: feature:248975-248975:1:region

position:248975:1
position: 248975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248975-248975:1:region

TB927.1.770
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.770
old locus tag: Tb927.1.770
so part of: sequence
location: complement(<248981..>249253)
location: region:248981-249253:-1
so has part: feature:248981-249253:-1:exon
subclass of: SO_0000010

4357168
type: Gene
SIO_000068: ncbigene

position:248981:-1
position: 248981
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:249253:-1
position: 249253
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248981-249253:-1:exon

TB927.1.770
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.770
old locus tag: Tb927.1.770
product: hypothetical protein, unlikely
transcript id: XM_001218779.1
SIO_010081: TB927.1.770
subclass of: SO_0000673
so part of: TB927.1.770
location: complement(<248981..>249253)
location: region:248981-249253:-1
so has part: feature:248981-249253:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:248981-249253:-1:exon

TB927.1.770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.770
old locus tag: Tb927.1.770
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MSHVFLCIIAILSPLLFSFPNPSVLLRLSRHTFFCLHNLTFLFQVMHRPLYISFSFFFSFPAILYLLYLAFTALFFTVVRFEEKEREISG
SIO_010081: TB927.1.770
subclass of: SO_0000673
so part of: TB927.1.770
location: complement(248981..249253)
location: region:248981-249253:-1
so has part: feature:248981-249253:-1:exon

XP_001218780.1
type: Protein
SIO_000068: ncbiprotein

Q4GZE1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:248981-249253:-1:exon

TB927.1.770
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.770
old locus tag: Tb927.1.770
note: 3 probable transmembrane helices predicted for Tb927.1.770 by TMHMM2.0 at aa 4-26, 33-52 and 57-79
SIO_010081: TB927.1.770
subclass of: SO_0000673
so part of: TB927.1.770
location: complement(join(249017..249085,249098..249157,249176..249244))
location: region:249017-249244:-1
so has part: feature:249176-249244:-1:exon
so has part: feature:249098-249157:-1:exon
so has part: feature:249017-249085:-1:exon

position:249017:-1
position: 249017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249244:-1
position: 249244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249176-249244:-1:exon

position:249176:-1
position: 249176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:249098-249157:-1:exon

position:249098:-1
position: 249098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249157:-1
position: 249157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:249017-249085:-1:exon

position:249085:-1
position: 249085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.770
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.770
old locus tag: Tb927.1.770
note: Signal peptide predicted for Tb927.1.770 by SignalP 2.0 HMM (Signal peptide probabilty 0.908, signal anchor probability 0.089) with cleavage site probability 0.601 between residues 18 and 19
SIO_010081: TB927.1.770
subclass of: SO_0000673
so part of: TB927.1.770
location: complement(249196..249253)
location: region:249196-249253:-1
so has part: feature:249196-249253:-1:exon

position:249196:-1
position: 249196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249196-249253:-1:exon

TB927.1.780
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.780
old locus tag: Tb927.1.780
so part of: sequence
location: complement(<249453..>250595)
location: region:249453-250595:-1
so has part: feature:249453-250595:-1:exon
subclass of: SO_0000010

4357169
type: Gene
SIO_000068: ncbigene

position:249453:-1
position: 249453
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:250595:-1
position: 250595
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249453-250595:-1:exon

TB927.1.780
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.780
old locus tag: Tb927.1.780
product: hypothetical protein, conserved
transcript id: XM_001218780.1
SIO_010081: TB927.1.780
subclass of: SO_0000673
so part of: TB927.1.780
location: complement(<249453..>250595)
location: region:249453-250595:-1
so has part: feature:249453-250595:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:249453-250595:-1:exon

TB927.1.780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.780
old locus tag: Tb927.1.780
codon start: 1
product: hypothetical protein, conserved
translation: MHSLRSNKQEARVDNDPLQEVDYSYNVQQLQAEFHVLPPSEAYRELCFRHQCKPINSVANLFSSCVGEWNVTTHLDFSQSYIGPKGVRPVVELCKRLPALKSFNCANNYLTNNAVYFISRMAAFHPSLERLELSFNEFISWTGGNFLYELTLCNSNIKEVGVLHTKIPPNVAEEIFRQSRCNCVLVYQAMGRPPKQSSHPEAIHLRAMKRFFNDMQENGTVPASALVEGHRERCRILGEAYDASKYTKAFYDELSSRLPQDNISWEAFIITLKLDGSVYNEEAVKKLRRLFLEFNMEPTAELDGFVEVRDLPAMCTRLNNEHAPSTVIKNMCDVLGLDDTMTLQWDEFLSLMYNSVATNMEHGVNLRMASPHSAVKMLHL
SIO_010081: TB927.1.780
subclass of: SO_0000673
so part of: TB927.1.780
location: complement(249453..250595)
location: region:249453-250595:-1
so has part: feature:249453-250595:-1:exon

XP_001218781.1
type: Protein
SIO_000068: ncbiprotein

IPR011992
type: InterPro
SIO_000068: interpro

Q4GZE0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:249453-250595:-1:exon

TB927.1.790
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.790
old locus tag: Tb927.1.790
so part of: sequence
location: complement(<250982..>253387)
location: region:250982-253387:-1
so has part: feature:250982-253387:-1:exon
subclass of: SO_0000010

4357117
type: Gene
SIO_000068: ncbigene

position:250982:-1
position: 250982
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:253387:-1
position: 253387
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250982-253387:-1:exon

TB927.1.790
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.790
old locus tag: Tb927.1.790
product: hypothetical protein, conserved
transcript id: XM_001218781.1
SIO_010081: TB927.1.790
subclass of: SO_0000673
so part of: TB927.1.790
location: complement(<250982..>253387)
location: region:250982-253387:-1
so has part: feature:250982-253387:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:250982-253387:-1:exon

TB927.1.790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.790
old locus tag: Tb927.1.790
codon start: 1
product: hypothetical protein, conserved
translation: MRLHSRQVLTLLCTRASSLLTTGGETAAPSCDAFTIRYVSGVSSSLVSLSCTTRDTQLHQCALQWVERLSSQLKHFPEGAPLVDEVVVNIFRVVKNSMRSSNSSWGEGSVPSLCINGLLLGLDERLTGMQFASWRPQAVLYSLQAIAMTECARQLGMTNLLFYCAKEHLQQFDENRVARLLWCVAKLQQEEAQAVLWKLACRRLLRLYPKLKAPSRALVLESLLLTHGCTCEAQQQLLCLLHEDMSSNRESGEHHDSEGEYPATALMDIEGEYHVLKARLLSQVHHLPVGTLIAMLRGGSGQLSPCSPHSGGATTADTETTYYLLKHLIRRPLDGAACREVLEVIASFEPTDLTESLRRHVLDCVSSKRSTATSVGNNPAQLLEVICLAVVLERQQVRNVGEELLSLLHSLIIECYNMRGAPLRRCCGRLAGLLSVALDVFTACRGKIGPMDPAITECSSIVVKFPEVWEQNGVAVTSTVSECITAVRVICELLRVPPLLRVVTESATSPTIVSSEGNSTDDHSGSLGSRQKLVEPLLERCAKCLHRDNVLVPASAVFDTWQHVARVSSSSAIIGGPVSRLGGGGKHDALQQIVTELFTYTEKRPSEFPLREIAKFLGASSHPLPMEAYDLFIRCLKNERKNVSAHYLELLLSSLEEVSARGDKVVLERLLLSLFVRSLGHDDAFAHTAPFTARQFVRLFHCCTNLTLNAAASMRATLLQRMTVACSEAAGIDDLNAVASLLPLLQQGAQRDALAAALVARGKVLNPATMSDVQKALLLVYLYKAGVPIDDGLTDAFRRRA
SIO_010081: TB927.1.790
subclass of: SO_0000673
so part of: TB927.1.790
location: complement(250982..253387)
location: region:250982-253387:-1
so has part: feature:250982-253387:-1:exon

XP_001218782.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD9
type: GOA
SIO_000068: goa

Q4GZD9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:250982-253387:-1:exon

TB927.1.790
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.790
old locus tag: Tb927.1.790
note: Signal peptide predicted for Tb927.1.790 by SignalP 2.0 HMM (Signal peptide probabilty 0.978, signal anchor probability 0.001) with cleavage site probability 0.334 between residues 27 and 28
SIO_010081: TB927.1.790
subclass of: SO_0000673
so part of: TB927.1.790
location: complement(253303..253387)
location: region:253303-253387:-1
so has part: feature:253303-253387:-1:exon

position:253303:-1
position: 253303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253303-253387:-1:exon

TB927.1.800
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.800
old locus tag: Tb927.1.800
so part of: sequence
location: complement(<253806..>254093)
location: region:253806-254093:-1
so has part: feature:253806-254093:-1:exon
subclass of: SO_0000010

4357118
type: Gene
SIO_000068: ncbigene

position:253806:-1
position: 253806
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:254093:-1
position: 254093
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253806-254093:-1:exon

TB927.1.800
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.800
old locus tag: Tb927.1.800
product: hypothetical protein, unlikely
transcript id: XM_001218782.1
SIO_010081: TB927.1.800
subclass of: SO_0000673
so part of: TB927.1.800
location: complement(<253806..>254093)
location: region:253806-254093:-1
so has part: feature:253806-254093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:253806-254093:-1:exon

TB927.1.800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.800
old locus tag: Tb927.1.800
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MNSHIFHFPSPSSVCVCVCTPSAAAIVCACNKIFFLVRMMCPLLLRFSCYSVQLQFCYLCSLPLFFFLFPLLFYSLIFSFVFTAGCWTSTTHLRP
SIO_010081: TB927.1.800
subclass of: SO_0000673
so part of: TB927.1.800
location: complement(253806..254093)
location: region:253806-254093:-1
so has part: feature:253806-254093:-1:exon

XP_001218783.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:253806-254093:-1:exon

TB927.1.800
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.800
old locus tag: Tb927.1.800
note: 3 probable transmembrane helices predicted for Tb927.1.800 by TMHMM2.0 at aa 5-27, 34-56 and 66-88
SIO_010081: TB927.1.800
subclass of: SO_0000673
so part of: TB927.1.800
location: complement(join(253830..253898,253926..253994,254013..254081))
location: region:253830-254081:-1
so has part: feature:254013-254081:-1:exon
so has part: feature:253926-253994:-1:exon
so has part: feature:253830-253898:-1:exon

position:253830:-1
position: 253830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254081:-1
position: 254081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254013-254081:-1:exon

position:254013:-1
position: 254013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:253926-253994:-1:exon

position:253926:-1
position: 253926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253994:-1
position: 253994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:253830-253898:-1:exon

position:253898:-1
position: 253898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.800
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.800
old locus tag: Tb927.1.800
note: Signal peptide predicted for Tb927.1.800 by SignalP 2.0 HMM (Signal peptide probabilty 0.883, signal anchor probability 0.061) with cleavage site probability 0.329 between residues 24 and 25
SIO_010081: TB927.1.800
subclass of: SO_0000673
so part of: TB927.1.800
location: complement(254018..254093)
location: region:254018-254093:-1
so has part: feature:254018-254093:-1:exon

position:254018:-1
position: 254018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254018-254093:-1:exon

TB927.1.810
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.810
old locus tag: Tb927.1.810
so part of: sequence
location: complement(<254257..>254655)
location: region:254257-254655:-1
so has part: feature:254257-254655:-1:exon
subclass of: SO_0000010

4357119
type: Gene
SIO_000068: ncbigene

position:254257:-1
position: 254257
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:254655:-1
position: 254655
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254257-254655:-1:exon

TB927.1.810
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.810
old locus tag: Tb927.1.810
product: hypothetical protein, unlikely
transcript id: XM_001218783.1
SIO_010081: TB927.1.810
subclass of: SO_0000673
so part of: TB927.1.810
location: complement(<254257..>254655)
location: region:254257-254655:-1
so has part: feature:254257-254655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254257-254655:-1:exon

TB927.1.810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.810
old locus tag: Tb927.1.810
codon start: 1
product: hypothetical protein, unlikely
translation: MGFGQFVFGGDSVGAWRYKALVWYSLCFLSQSPVEKVHFFIHLFICLCLYCGMEQRVAFSFFIYIYMKNKPFPLTGKVTLFAHLFYFLSHVLLMPYAWRKVSDRLTGRSNNFTPPPSFKKKITPFSYAKKKI
SIO_010081: TB927.1.810
subclass of: SO_0000673
so part of: TB927.1.810
location: complement(254257..254655)
location: region:254257-254655:-1
so has part: feature:254257-254655:-1:exon

XP_001218784.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:254257-254655:-1:exon

TB927.1.810
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.810
old locus tag: Tb927.1.810
note: 3 probable transmembrane helices predicted for Tb927.1.810 by TMHMM2.0 at aa 13-30, 37-59 and 79-98
SIO_010081: TB927.1.810
subclass of: SO_0000673
so part of: TB927.1.810
location: complement(join(254362..254421,254479..254547,254566..254619))
location: region:254362-254619:-1
so has part: feature:254566-254619:-1:exon
so has part: feature:254479-254547:-1:exon
so has part: feature:254362-254421:-1:exon

position:254362:-1
position: 254362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254619:-1
position: 254619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254566-254619:-1:exon

position:254566:-1
position: 254566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:254479-254547:-1:exon

position:254479:-1
position: 254479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254547:-1
position: 254547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:254362-254421:-1:exon

position:254421:-1
position: 254421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.820
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.820
old locus tag: Tb927.1.820
so part of: sequence
location: complement(<254856..>256136)
location: region:254856-256136:-1
so has part: feature:254856-256136:-1:exon
subclass of: SO_0000010

4357120
type: Gene
SIO_000068: ncbigene

position:254856:-1
position: 254856
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:256136:-1
position: 256136
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254856-256136:-1:exon

TB927.1.820
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.820
old locus tag: Tb927.1.820
product: hypothetical protein, conserved
transcript id: XM_001218784.1
SIO_010081: TB927.1.820
subclass of: SO_0000673
so part of: TB927.1.820
location: complement(<254856..>256136)
location: region:254856-256136:-1
so has part: feature:254856-256136:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254856-256136:-1:exon

TB927.1.820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.820
old locus tag: Tb927.1.820
codon start: 1
product: hypothetical protein, conserved
translation: MMSNTTSSGKGPTTFMWNSVPPSGDMPLHGCCHSLANYKDEQLILFGGGALHIIFNDVYCFDLKTSTWSYKETTNSEIVAPRISHSAVVHEDKMYVYGGQDLYMPTRFADVLVLDLITFTWSLIQQQATPAPDGPGDRRLHTAHIYRNCMYVLMGEPCNISNSFWFLDLTTLEWHPVHSSGWFGKPILPLLGHSAQVEGDYLYVFGGYHADSARRNGSPVYNNSLFSYHFPSNTWREVVPSSGPRPSPRYASAMAVIRGRVFIYGGDVDGEVYFDDFWCIDTNIPSSAASQSSSSSSYTTSLVAAPPAASSRWIDITLSCGRGRPSARSGHASAVAQGCLFVVGGELPGDRDVVYYSNRTYRYPLGYLTRLSLVELSSLWLAKCNPANIWMLDTQIPRHVRQLLVRNLNAQDRESTDDMMPCTRVV
SIO_010081: TB927.1.820
subclass of: SO_0000673
so part of: TB927.1.820
location: complement(254856..256136)
location: region:254856-256136:-1
so has part: feature:254856-256136:-1:exon

XP_001218785.1
type: Protein
SIO_000068: ncbiprotein

IPR015915
type: InterPro
SIO_000068: interpro

Q4GZD6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:254856-256136:-1:exon

TB927.1.830
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.830
old locus tag: Tb927.1.830
so part of: sequence
location: complement(<256902..>259748)
location: region:256902-259748:-1
so has part: feature:256902-259748:-1:exon
subclass of: SO_0000010

4357121
type: Gene
SIO_000068: ncbigene

position:256902:-1
position: 256902
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:259748:-1
position: 259748
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256902-259748:-1:exon

TB927.1.830
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.830
old locus tag: Tb927.1.830
product: hypothetical protein, conserved
transcript id: XM_001218785.1
SIO_010081: TB927.1.830
subclass of: SO_0000673
so part of: TB927.1.830
location: complement(<256902..>259748)
location: region:256902-259748:-1
so has part: feature:256902-259748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:256902-259748:-1:exon

TB927.1.830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.830
old locus tag: Tb927.1.830
codon start: 1
product: hypothetical protein, conserved
translation: MFIAIILSYRTGVNFDFLQCVYAIARIEIRQMEPVDGAAGVGGIWTAIDAFVACGSSEAGVFLRNVLREAARSSVITTTSPPLSMLADACARFNTNGIPLSTLLLVAILNRIFCMQDVAAALALPVNGGRSSISNDLLPFYKSYLDASIGLPESVKSQLYLCVSSLLVLQVSGMDVVEALLSQFGGTVPADEEGFRCFIKIFSGCMMVISDRRIPMGPVQRSKQRLRLQRNIHLLLMCAPSSTEELKCLCVTVSQAVTFLSECTLQDPQDTSPLFWKHLPTSSFWEAVIHHLRHGISGEEIISAACTVIRAVSHVDDSTFPVLMSALLAVSGTEGVTVPVLYTCRVIAAAMESSVETVVLNFDPDHALYRQLAHGAHVLEGILEQQVTLLANRVSAVATETEEIVLVVCEGLQVISQVLAPLPIPEMDPTDDPSDYDMIVEDIRYKNERKEHALRVLRDFFERCHASLLRWMKHVDDRDVCDIVDNLLSSDVDEFFVQYDELPIALFATYERLCSLLWRQPSSHCVPQCAELTLLASEGFLATSAWDVSLTYQSLVFSGSDSASKQQRLLRSSLLVPVVVRRHKDKWSAGETASVICSLVELLRWAVTCKIDVKCVASISEGLRNLQTSAEPTLMESLWLGLHLDCGEDKTARWSLASHLGSFLSPGLLPALLPFDDCTQLILISHSVGSVGDVWRAMGVLQRVEPDVAYAYMSADRIVSWLHNYISQGSVTTPQDRQVVAQYTETLGQWCAANPSHFRVAWRLSKPLGPEAAAEILADSLEMYFIRVIKDNSMSWLDEGDYFSPYVLDTLAQSGHAPRLLRVLKYVIRIPATCISTSDAPYRLQAVVRGGNTLLKGGRCTNESLLELFYEATVEYRRLIQSLVADVTYDLDEGDKREDNHEWLLAELSKLGRVAQLVFSLPEGVPQWLHEVRCAVDEFDVRRVLKGN
SIO_010081: TB927.1.830
subclass of: SO_0000673
so part of: TB927.1.830
location: complement(256902..259748)
location: region:256902-259748:-1
so has part: feature:256902-259748:-1:exon

XP_001218786.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:256902-259748:-1:exon

TB927.1.840
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.840
old locus tag: Tb927.1.840
so part of: sequence
location: complement(<260024..>260743)
location: region:260024-260743:-1
so has part: feature:260024-260743:-1:exon
subclass of: SO_0000010

4357122
type: Gene
SIO_000068: ncbigene

position:260024:-1
position: 260024
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:260743:-1
position: 260743
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260024-260743:-1:exon

TB927.1.840
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.840
old locus tag: Tb927.1.840
product: hypothetical protein, conserved
transcript id: XM_001218786.1
SIO_010081: TB927.1.840
subclass of: SO_0000673
so part of: TB927.1.840
location: complement(<260024..>260743)
location: region:260024-260743:-1
so has part: feature:260024-260743:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260024-260743:-1:exon

TB927.1.840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.840
old locus tag: Tb927.1.840
codon start: 1
product: hypothetical protein, conserved
translation: MIHHVSVLSLSCAQGYWWSYLRRLLKFVFAVLPSLTPSVVSAAQPFIFIFLTMRRMCVHLCRAAAAAASVGSSNKSDPIEEKKQKADNIFTIRRSPASLYESTMHSNTLSDHPLTHRARRNELAYRKRRLTERGNYEQAAEAEAEAERRDREGRGGAETREYYSAICFVVLGYLTAHGVVFKRFYPQDLQLNYSPDRGYSDEVAARRKELAAINEMVGVSVLESVYSKEKAKIKSEIDA
SIO_010081: TB927.1.840
subclass of: SO_0000673
so part of: TB927.1.840
location: complement(260024..260743)
location: region:260024-260743:-1
so has part: feature:260024-260743:-1:exon

XP_001218787.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD4
type: GOA
SIO_000068: goa

Q4GZD4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:260024-260743:-1:exon

TB927.1.840
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.840
old locus tag: Tb927.1.840
note: 2 probable transmembrane helices predicted for Tb927.1.840 by TMHMM2.0 at aa 29-51 and 162-181
SIO_010081: TB927.1.840
subclass of: SO_0000673
so part of: TB927.1.840
location: complement(join(260201..260260,260591..260659))
location: region:260201-260659:-1
so has part: feature:260591-260659:-1:exon
so has part: feature:260201-260260:-1:exon

position:260201:-1
position: 260201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260659:-1
position: 260659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260591-260659:-1:exon

position:260591:-1
position: 260591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:260201-260260:-1:exon

position:260260:-1
position: 260260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.840
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.840
old locus tag: Tb927.1.840
note: Signal peptide predicted for Tb927.1.840 by SignalP 2.0 HMM (Signal peptide probabilty 0.940, signal anchor probability 0.040) with cleavage site probability 0.728 between residues 42 and 43
SIO_010081: TB927.1.840
subclass of: SO_0000673
so part of: TB927.1.840
location: complement(260614..260743)
location: region:260614-260743:-1
so has part: feature:260614-260743:-1:exon

position:260614:-1
position: 260614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260614-260743:-1:exon

TB927.1.850
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.850
old locus tag: Tb927.1.850
so part of: sequence
location: complement(<260760..>261035)
location: region:260760-261035:-1
so has part: feature:260760-261035:-1:exon
subclass of: SO_0000010

4357123
type: Gene
SIO_000068: ncbigene

position:260760:-1
position: 260760
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:261035:-1
position: 261035
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260760-261035:-1:exon

TB927.1.850
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.850
old locus tag: Tb927.1.850
product: hypothetical protein, unlikely
transcript id: XM_001218787.1
SIO_010081: TB927.1.850
subclass of: SO_0000673
so part of: TB927.1.850
location: complement(<260760..>261035)
location: region:260760-261035:-1
so has part: feature:260760-261035:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260760-261035:-1:exon

TB927.1.850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.850
old locus tag: Tb927.1.850
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MGTMEEEMGGGVSSFMISLLCVWEAAECRARRNHPIQEKVIRHVLLLQLFKALLRQRGSRVELPISYFGSRSTNCLGTNWEQHYISSFPRG
SIO_010081: TB927.1.850
subclass of: SO_0000673
so part of: TB927.1.850
location: complement(260760..261035)
location: region:260760-261035:-1
so has part: feature:260760-261035:-1:exon

XP_001218788.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:260760-261035:-1:exon

TB927.1.850
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.850
old locus tag: Tb927.1.850
note: Signal peptide predicted for Tb927.1.850 by SignalP 2.0 HMM (Signal peptide probabilty 0.619, signal anchor probability 0.048) with cleavage site probability 0.442 between residues 30 and 31
SIO_010081: TB927.1.850
subclass of: SO_0000673
so part of: TB927.1.850
location: complement(260942..261035)
location: region:260942-261035:-1
so has part: feature:260942-261035:-1:exon

position:260942:-1
position: 260942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260942-261035:-1:exon

TB927.1.860
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.860
old locus tag: Tb927.1.860
so part of: sequence
location: complement(<261261..>262067)
location: region:261261-262067:-1
so has part: feature:261261-262067:-1:exon
subclass of: SO_0000010

4357124
type: Gene
SIO_000068: ncbigene

position:261261:-1
position: 261261
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:262067:-1
position: 262067
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261261-262067:-1:exon

TB927.1.860
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.860
old locus tag: Tb927.1.860
product: hypothetical protein, conserved
transcript id: XM_001218788.1
SIO_010081: TB927.1.860
subclass of: SO_0000673
so part of: TB927.1.860
location: complement(<261261..>262067)
location: region:261261-262067:-1
so has part: feature:261261-262067:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:261261-262067:-1:exon

TB927.1.860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.860
old locus tag: Tb927.1.860
note: GPI-Anchor Signal predicted for Tb927.1.860 by DGPI v2.04, no cleavage site predicted
codon start: 1
product: hypothetical protein, conserved
translation: MLGLKAIVFFAVLCFVSAEYCCGITQSYILQRRIDGTNDWRIVSTFNISRHSVDSLVKLKHSSPQGDNDLTAVEKDALVKAEHVFYRVTRGGDDTDAGAVAVALSPCTIVRGFEALDPRTVLLHETLAVAVGTNVSVVGLQVTSTTNAFHAKMLDGDECDLTVLLLFPQVKMRLKLGLLVASAPLTTPNYTELAEYTNHLSKEGSSQKKGTKKSKKRSSDAQNPLSQEQEQDDAEDEEDKRSFVERYWIYFVVPFAVSLLQGIFAPKQ
SIO_010081: TB927.1.860
subclass of: SO_0000673
so part of: TB927.1.860
location: complement(261261..262067)
location: region:261261-262067:-1
so has part: feature:261261-262067:-1:exon

XP_001218789.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:261261-262067:-1:exon

TB927.1.860
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.860
old locus tag: Tb927.1.860
note: 1 probable transmembrane helix predicted for Tb927.1.860 by TMHMM2.0 at aa 7-29
SIO_010081: TB927.1.860
subclass of: SO_0000673
so part of: TB927.1.860
location: complement(261981..262049)
location: region:261981-262049:-1
so has part: feature:261981-262049:-1:exon

position:261981:-1
position: 261981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262049:-1
position: 262049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261981-262049:-1:exon

TB927.1.860
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.860
old locus tag: Tb927.1.860
note: Signal peptide predicted for Tb927.1.860 by SignalP 2.0 HMM (Signal peptide probabilty 0.999, signal anchor probability 0.001) with cleavage site probability 0.770 between residues 18 and 19
SIO_010081: TB927.1.860
subclass of: SO_0000673
so part of: TB927.1.860
location: complement(262010..262067)
location: region:262010-262067:-1
so has part: feature:262010-262067:-1:exon

position:262010:-1
position: 262010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262010-262067:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 262292
location: region:262292-262292:1
so has part: feature:262292-262292:1:region

position:262292:1
position: 262292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262292-262292:1:region

TB927.1.870
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.870
old locus tag: Tb927.1.870
so part of: sequence
location: complement(<262552..>263580)
location: region:262552-263580:-1
so has part: feature:262552-263580:-1:exon
subclass of: SO_0000010

4357125
type: Gene
SIO_000068: ncbigene

position:262552:-1
position: 262552
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:263580:-1
position: 263580
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262552-263580:-1:exon

TB927.1.870
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.870
old locus tag: Tb927.1.870
product: deoxyhypusine synthase, putative
transcript id: XM_001218789.1
SIO_010081: TB927.1.870
subclass of: SO_0000673
so part of: TB927.1.870
location: complement(<262552..>263580)
location: region:262552-263580:-1
so has part: feature:262552-263580:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262552-263580:-1:exon

TB927.1.870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.870
old locus tag: Tb927.1.870
EC number: 2.5.1.46
codon start: 1
product: deoxyhypusine synthase, putative
translation: MSGVPFPSRVIGDLDYSNLLNIGQEEAIRCVLNAYPNIGLEATNLGRARRIVQRALNDNGMDGNKVMLAYTSNLISSGLRDTFACLARENRIGAVVTTAGGVEEDVIKCLGDTLVGDFALNDHALRNNGLNRVGNLLVPNDNYRNFEDFFVPLLRRLHEQQRDSRWTTKTTPSQIIAEIGAALESVRPNDCGSSLIYWCYRNDIPVFSPAFTDGSMGDMIYFYNYSRKGLVVDPVPDVRRLRQLGCKSTNVGRITCIVLGAGLPKHHLLRNVQADAVVYVTTGSDADGCESSCNVMADRANGLLSPNCDVVRVHGDATIISPLLLLRSSDGKEKVGVREDGN
SIO_010081: TB927.1.870
subclass of: SO_0000673
so part of: TB927.1.870
location: complement(262552..263580)
location: region:262552-263580:-1
so has part: feature:262552-263580:-1:exon

XP_001218790.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD1
type: GOA
SIO_000068: goa

IPR002773
type: InterPro
SIO_000068: interpro

IPR029035
type: InterPro
SIO_000068: interpro

Q4GZD1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:262552-263580:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 264062
location: region:264062-264062:1
so has part: feature:264062-264062:1:region

position:264062:1
position: 264062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264062-264062:1:region

TB927.1.880
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.880
old locus tag: Tb927.1.880
so part of: sequence
location: complement(<264384..>278186)
location: region:264384-278186:-1
so has part: feature:264384-278186:-1:exon
subclass of: SO_0000010

4357126
type: Gene
SIO_000068: ncbigene

position:264384:-1
position: 264384
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:278186:-1
position: 278186
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264384-278186:-1:exon

TB927.1.880
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.880
old locus tag: Tb927.1.880
product: hypothetical protein, conserved
transcript id: XM_001218790.1
SIO_010081: TB927.1.880
subclass of: SO_0000673
so part of: TB927.1.880
location: complement(<264384..>278186)
location: region:264384-278186:-1
so has part: feature:264384-278186:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:264384-278186:-1:exon

TB927.1.880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.880
old locus tag: Tb927.1.880
codon start: 1
product: hypothetical protein, conserved
translation: MYMLGWQTMILTAVSEQNLRNLKVTLDTSRAVLVQGEVGCGKSFFVKALAEECGAYSTMIQINVDDSFDSRDLLGKFSATDVPGAFEWVPGPLTTAVANGLWILMEDIDLASFDVFSVLLSLLEESTLFLPDKNKRINAHPNFRIIATQQLRSVGDTFTTRKSNSVPFGELWGVTVLKSLPPEEICVVATSLYSVPRSVVSALTTLPSRLFGTSLVTLRSLLKWCKRVSRRLPNTNLSNEFISSTIREMMFREAYDCMLAGFPKCDELIRIINIMAECVGILPNVADSLAYQSKPEMRSGAEYFTVGRVTLPLYGCLSGDLKTTAVFAATKHSMSLLERIAAAVDAQENVLLTGETGVGKTFVVQYLADKVGQKLIVHNLDQQTDTSDFMGGWKPLDVGVAVRNAYQDFVDLFSQCFNASRNAEFLSAVQMSMKKCSWLVVVRQILKGCSSFKLKNIQHPFSTELQERWLNLENVTQDLLATLHTTRNTFAFRFEEGSLTRAWREGYWILLDEVNLASTEILERVSAVLGDVDALYLTDKVGSEPIKRHKNFHVFANMNPPTDVGKKDIPPSLRSKFTEIYVSEPFEQGDISIVVSEFIGHLATDCKIQEVTSFFLEYVGKAKSALCSLDGGTKPPTVSLRTLTRALTYVRKATSQYGFALALFDGLMLGFATPLERQFHSIVEQLIKKHVFGNGEPPRPTLPRCPSGGRFVAYEHIWLPVGSEEPRKDESFILTPSVKGHLLNVARAVFADRPVLLEGPTSSGKSSMVKYLAEFTGHKFIRINNHESTEIQEYVGHYISDERGKLRFVDGILVDAVRNGYWIMLDELNLAPTEVLEALNRLLDDNHELFVADTQETIKPHPHLRIFATQNPAGVYGGRKLLSRAFRNRFLEITVDDIPNTELCTILCQRYSLSPSFAEKMVEVMTTLQIRRQGSRVFAGRHGFVTPRDLFRWAERCPGTYQEMAEHGFLLLVERCRKTEERQIVKDVIESITKTELNEGDIYSPHHWPYVAEHYKHVESRVAEEFGIVWTESMLRLFTVVGICLFHREPVLLVGETGSSKTTVCQVWAAILQRRLSIVNCHQHSEAADFLGSLRPALPNQQSSAIFQWRNGPLVECMLKGGVFVLDEISLAEDSVLERLNSVLEPGRTVTLAEKSTADVIFAHEDFRILATMNPGGDFGKRELSPALRNRFTEIYVRPTVEREEVTLILSKRLNQNLSHWAAHMASLLCDAASVCSVAGVPQHISIRDIIGWVSFMNAADGHCDEQVSFVHGLDAVILDGVGVGTGQSDMGTHGLREALIAKVREVCKVSSDCLREPFWELFDTLEEPTLPPEMKGRFFFGAPSTSRNLSKLVRAGIMRRAILLEGSPGVGKTSIVEALGCALRKHVVRVNLSEQTDIMDLFGTFLPCPSSGDSGGPQFSWSDGVLLHALKNGWWVILDELNLASQSVLEGLNALLDHRSTVFIPELGEEFQAADGFRVFACQNPLAEGGGRKGLPRSFLNRFTRVRIEPFDVEDLMRIVVAVAPGIGEATLCKMVGFVDELHREVVVRRAFGVRGSPWEFNLRDILRWAKLMEAYGVMDMPCEFVDMLFTQRMRTDTDRKRTVELVEKIFGSSAMCGLTFQESHFLIANDAVHFGSRFLTRRVQGSNPFIDTAYNSLMLLPSQAGVVRSLLTCAEQNQLCILAGPTGAGKTFCIRAAAALAGARLLTFSMNASCDTVDLLGGFDQVEGKQGQFEWSDSLILEAMQSGHWLVLDNVNYCNASVLDRLNPLVEPNGMLSVNEQGLVDGQVRVVRPHPNFRLFMTLDPKYGEVSRAMRNRAVEIYVHPVEIPSLESLAISGASTSCRSVEHLEMLNRYHREFLRSLFSADSALPMSTQLSDALASGTPNTFTLVKTASMLSAASNLEDLKMFIRHKYIDNRCGHWNVRKDEVATNLDMLVAAGESDACRCFPSVADLLSALSVTGSSEGSGSALESVEEALVRIRVLRSGLALRAQLTAEG…
SIO_010081: TB927.1.880
subclass of: SO_0000673
so part of: TB927.1.880
location: complement(264384..278186)
location: region:264384-278186:-1
so has part: feature:264384-278186:-1:exon

XP_001218791.1
type: Protein
SIO_000068: ncbiprotein

Q4GZD0
type: GOA
SIO_000068: goa

IPR002035
type: InterPro
SIO_000068: interpro

IPR003593
type: InterPro
SIO_000068: interpro

IPR011704
type: InterPro
SIO_000068: interpro

IPR012099
type: InterPro
SIO_000068: interpro

IPR025662
type: InterPro
SIO_000068: interpro

Q4GZD0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:264384-278186:-1:exon

TB927.1.880
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.880
old locus tag: Tb927.1.880
note: Majority of WCS reads call A, One WCS read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 2847 in Tb927.1.880 S -> R
SIO_010081: TB927.1.880
subclass of: SO_0000673
so part of: TB927.1.880
location: 269646
location: region:269646-269646:1
so has part: feature:269646-269646:1:exon

position:269646:1
position: 269646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269646-269646:1:exon

TB927.1.880
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.880
old locus tag: Tb927.1.880
note: Majority of WCS reads call C, Two WCS reads call T; type 1 (single nucleotide substitutions); mis-sense mutation at 2110 in Tb927.1.880 V -> M
SIO_010081: TB927.1.880
subclass of: SO_0000673
so part of: TB927.1.880
location: 271859
location: region:271859-271859:1
so has part: feature:271859-271859:1:exon

position:271859:1
position: 271859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271859-271859:1:exon

TB927.1.890
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.890
old locus tag: Tb927.1.890
so part of: sequence
location: complement(<278431..>279201)
location: region:278431-279201:-1
so has part: feature:278431-279201:-1:exon
subclass of: SO_0000010

4357102
type: Gene
SIO_000068: ncbigene

position:278431:-1
position: 278431
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:279201:-1
position: 279201
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278431-279201:-1:exon

TB927.1.890
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.890
old locus tag: Tb927.1.890
product: hypothetical protein, conserved
transcript id: XM_001218791.1
SIO_010081: TB927.1.890
subclass of: SO_0000673
so part of: TB927.1.890
location: complement(<278431..>279201)
location: region:278431-279201:-1
so has part: feature:278431-279201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:278431-279201:-1:exon

TB927.1.890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.890
old locus tag: Tb927.1.890
codon start: 1
product: hypothetical protein, conserved
translation: MNRTVAICGQRSLARFKYAAVTGLLTLKVPQGALFNMLVAAIGFLEGFDAHGLSFSVDVPDGAFCKTRPIGCCYTEVSRVSSLPKLMPTEQTSASTRNRYSMNAKTCESQPPHSVENIPFRVFIDVADGPLAGEEFLYDKLKTVSCPCISMKVMAVFFAAGVTAPKEIMLPFFDRVATHDKTTAMNLASFLEYEMNISSYVRFLKSGQTKQHYPNRSKLEEIMKFAARSNCGETQIASQRGGPTRSSRLQRTRERK
SIO_010081: TB927.1.890
subclass of: SO_0000673
so part of: TB927.1.890
location: complement(278431..279201)
location: region:278431-279201:-1
so has part: feature:278431-279201:-1:exon

XP_001218792.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:278431-279201:-1:exon

TB927.1.890
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.890
old locus tag: Tb927.1.890
note: 1 probable transmembrane helix predicted for Tb927.1.890 by TMHMM2.0 at aa 21-43
SIO_010081: TB927.1.890
subclass of: SO_0000673
so part of: TB927.1.890
location: complement(279073..279141)
location: region:279073-279141:-1
so has part: feature:279073-279141:-1:exon

position:279073:-1
position: 279073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279141:-1
position: 279141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279073-279141:-1:exon

TB927.1.900
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.900
old locus tag: Tb927.1.900
so part of: sequence
location: complement(<281269..>281577)
location: region:281269-281577:-1
so has part: feature:281269-281577:-1:exon
subclass of: SO_0000010

4357103
type: Gene
SIO_000068: ncbigene

position:281269:-1
position: 281269
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:281577:-1
position: 281577
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281269-281577:-1:exon

TB927.1.900
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.900
old locus tag: Tb927.1.900
product: hypothetical protein, unlikely
transcript id: XM_001218792.1
SIO_010081: TB927.1.900
subclass of: SO_0000673
so part of: TB927.1.900
location: complement(<281269..>281577)
location: region:281269-281577:-1
so has part: feature:281269-281577:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:281269-281577:-1:exon

TB927.1.900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.900
old locus tag: Tb927.1.900
codon start: 1
product: hypothetical protein, unlikely
translation: MDGGGRVAGTGVQLKPATVHGSVECVEFDKLSGSSNLFALQTMPVYFGASRVPWRLLDVGVKERKPASESGSAGAAMWLALVRFPPRGACPMPAAMGGWGVR
SIO_010081: TB927.1.900
subclass of: SO_0000673
so part of: TB927.1.900
location: complement(281269..281577)
location: region:281269-281577:-1
so has part: feature:281269-281577:-1:exon

XP_001218793.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:281269-281577:-1:exon

TB927.1.910
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.910
old locus tag: Tb927.1.910
so part of: sequence
location: complement(<283009..>283206)
location: region:283009-283206:-1
so has part: feature:283009-283206:-1:exon
subclass of: SO_0000010

4357104
type: Gene
SIO_000068: ncbigene

position:283009:-1
position: 283009
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:283206:-1
position: 283206
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283009-283206:-1:exon

TB927.1.910
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.910
old locus tag: Tb927.1.910
product: hypothetical protein, unlikely
transcript id: XM_001218793.1
SIO_010081: TB927.1.910
subclass of: SO_0000673
so part of: TB927.1.910
location: complement(<283009..>283206)
location: region:283009-283206:-1
so has part: feature:283009-283206:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:283009-283206:-1:exon

TB927.1.910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.910
old locus tag: Tb927.1.910
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MEACDTYRRDFFRLGFAWPQRNTSGVIVGWQSARAGIRNGGEVEVKTKRLWGCTSPRVVRTFKAE
SIO_010081: TB927.1.910
subclass of: SO_0000673
so part of: TB927.1.910
location: complement(283009..283206)
location: region:283009-283206:-1
so has part: feature:283009-283206:-1:exon

XP_001218794.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:283009-283206:-1:exon

TB927.1.920
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.920
old locus tag: Tb927.1.920
so part of: sequence
location: complement(<284354..>284545)
location: region:284354-284545:-1
so has part: feature:284354-284545:-1:exon
subclass of: SO_0000010

4357105
type: Gene
SIO_000068: ncbigene

position:284354:-1
position: 284354
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:284545:-1
position: 284545
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284354-284545:-1:exon

TB927.1.920
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.920
old locus tag: Tb927.1.920
product: hypothetical protein, unlikely
transcript id: XM_001218794.1
SIO_010081: TB927.1.920
subclass of: SO_0000673
so part of: TB927.1.920
location: complement(<284354..>284545)
location: region:284354-284545:-1
so has part: feature:284354-284545:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:284354-284545:-1:exon

TB927.1.920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.920
old locus tag: Tb927.1.920
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MMRRKREESAEGKERCGYDGYPSNPQQSAAKKQGLHLLGGHFTGGLTTAISEAHQGESTSSKQ
SIO_010081: TB927.1.920
subclass of: SO_0000673
so part of: TB927.1.920
location: complement(284354..284545)
location: region:284354-284545:-1
so has part: feature:284354-284545:-1:exon

XP_001218795.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:284354-284545:-1:exon

TB927.1.930
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.930
old locus tag: Tb927.1.930
so part of: sequence
location: complement(<285130..>285471)
location: region:285130-285471:-1
so has part: feature:285130-285471:-1:exon
subclass of: SO_0000010

4357106
type: Gene
SIO_000068: ncbigene

position:285130:-1
position: 285130
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:285471:-1
position: 285471
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285130-285471:-1:exon

TB927.1.930
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.930
old locus tag: Tb927.1.930
product: hypothetical protein, unlikely
transcript id: XM_001218795.1
SIO_010081: TB927.1.930
subclass of: SO_0000673
so part of: TB927.1.930
location: complement(<285130..>285471)
location: region:285130-285471:-1
so has part: feature:285130-285471:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285130-285471:-1:exon

TB927.1.930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.930
old locus tag: Tb927.1.930
codon start: 1
product: hypothetical protein, unlikely
translation: MGLAKMENETDASASNIERKRPAAQRRTSLYGGARLQRCQEKRYKMSISNKNGLKRQRPSLVQCFQAATAGFGNRTTRQHHSTHQLVMACATMPSKRYKHVLRVYRRVKTLLE
SIO_010081: TB927.1.930
subclass of: SO_0000673
so part of: TB927.1.930
location: complement(285130..285471)
location: region:285130-285471:-1
so has part: feature:285130-285471:-1:exon

XP_001218796.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:285130-285471:-1:exon

TB927.1.940
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.940
old locus tag: Tb927.1.940
so part of: sequence
location: complement(<285792..>286328)
location: region:285792-286328:-1
so has part: feature:285792-286328:-1:exon
subclass of: SO_0000010

4357107
type: Gene
SIO_000068: ncbigene

position:285792:-1
position: 285792
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:286328:-1
position: 286328
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285792-286328:-1:exon

TB927.1.940
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.940
old locus tag: Tb927.1.940
product: hypothetical protein, unlikely
transcript id: XM_001218796.1
SIO_010081: TB927.1.940
subclass of: SO_0000673
so part of: TB927.1.940
location: complement(<285792..>286328)
location: region:285792-286328:-1
so has part: feature:285792-286328:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285792-286328:-1:exon

TB927.1.940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.940
old locus tag: Tb927.1.940
codon start: 1
product: hypothetical protein, unlikely
translation: MLIRTLSPSRVPETGMLLGYLHRTVRQPLIHQLGKKVALRPRRGQFGSIHPSQEQPAAGCDSKRRGMSILFLEHTAIVLTLRRFAAKTYPHVTAHSAVSPSHIHIRPLPCAPKKLSRDDRTTPTPWCALSPSPQLTTEILHFIGTRLVSATTKNVVGNPHRNIHQKKKKAGVVRDTTC
SIO_010081: TB927.1.940
subclass of: SO_0000673
so part of: TB927.1.940
location: complement(285792..286328)
location: region:285792-286328:-1
so has part: feature:285792-286328:-1:exon

XP_001218797.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:285792-286328:-1:exon

TB927.1.950
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.950
old locus tag: Tb927.1.950
so part of: sequence
location: complement(<286344..>286565)
location: region:286344-286565:-1
so has part: feature:286344-286565:-1:exon
subclass of: SO_0000010

4357108
type: Gene
SIO_000068: ncbigene

position:286344:-1
position: 286344
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:286565:-1
position: 286565
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286344-286565:-1:exon

TB927.1.950
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.950
old locus tag: Tb927.1.950
product: hypothetical protein, unlikely
transcript id: XM_001218797.1
SIO_010081: TB927.1.950
subclass of: SO_0000673
so part of: TB927.1.950
location: complement(<286344..>286565)
location: region:286344-286565:-1
so has part: feature:286344-286565:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:286344-286565:-1:exon

TB927.1.950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.950
old locus tag: Tb927.1.950
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MTTAAPRRQQTLRHRSGGTHRAHVAYTLKIRSGRGGCSINPPLGEERPRNWTGSTLGRAPVTYGPDIASITCP
SIO_010081: TB927.1.950
subclass of: SO_0000673
so part of: TB927.1.950
location: complement(286344..286565)
location: region:286344-286565:-1
so has part: feature:286344-286565:-1:exon

XP_001218798.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:286344-286565:-1:exon

TB927.1.950
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.950
old locus tag: Tb927.1.950
note: Majority of WCS reads call G, One WCS read calls A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.950
subclass of: SO_0000673
so part of: TB927.1.950
location: 286554
location: region:286554-286554:1
so has part: feature:286554-286554:1:exon

position:286554:1
position: 286554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286554-286554:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 286604
location: region:286604-286604:1
so has part: feature:286604-286604:1:region

position:286604:1
position: 286604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286604-286604:1:region

TB927.1.960
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.960
old locus tag: Tb927.1.960
so part of: sequence
location: complement(<286791..>287102)
location: region:286791-287102:-1
so has part: feature:286791-287102:-1:exon
subclass of: SO_0000010

4357109
type: Gene
SIO_000068: ncbigene

position:286791:-1
position: 286791
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:287102:-1
position: 287102
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286791-287102:-1:exon

TB927.1.960
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.960
old locus tag: Tb927.1.960
product: hypothetical protein, unlikely
transcript id: XM_001218798.1
SIO_010081: TB927.1.960
subclass of: SO_0000673
so part of: TB927.1.960
location: complement(<286791..>287102)
location: region:286791-287102:-1
so has part: feature:286791-287102:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:286791-287102:-1:exon

TB927.1.960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.960
old locus tag: Tb927.1.960
codon start: 1
product: hypothetical protein, unlikely
translation: MFKKIKSRIGKKAGTRSSASALLSMPLTRMAPRKELIRFNSDSVQITRESTNRQTTLSAYTYLRVANHRKEANDPLLARVAFHTTKDRIRKRKPPKDSNVFKQ
SIO_010081: TB927.1.960
subclass of: SO_0000673
so part of: TB927.1.960
location: complement(286791..287102)
location: region:286791-287102:-1
so has part: feature:286791-287102:-1:exon

XP_001218799.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:286791-287102:-1:exon

TB927.1.970
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.970
old locus tag: Tb927.1.970
so part of: sequence
location: complement(<287417..>287728)
location: region:287417-287728:-1
so has part: feature:287417-287728:-1:exon
subclass of: SO_0000010

4357110
type: Gene
SIO_000068: ncbigene

position:287417:-1
position: 287417
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:287728:-1
position: 287728
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287417-287728:-1:exon

TB927.1.970
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.970
old locus tag: Tb927.1.970
product: hypothetical protein, unlikely
transcript id: XM_001218799.1
SIO_010081: TB927.1.970
subclass of: SO_0000673
so part of: TB927.1.970
location: complement(<287417..>287728)
location: region:287417-287728:-1
so has part: feature:287417-287728:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287417-287728:-1:exon

TB927.1.970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.970
old locus tag: Tb927.1.970
codon start: 1
product: hypothetical protein, unlikely
translation: MGTPHPTFCYPSTRAKREKSTAPCSSFTRRVSNDKKYHSQYPHSLGGINTRQNAIGCSPQHILSLVRLSTTSDAKQKTYNNQKLGNAGEIFVPKGAACLNHVC
SIO_010081: TB927.1.970
subclass of: SO_0000673
so part of: TB927.1.970
location: complement(287417..287728)
location: region:287417-287728:-1
so has part: feature:287417-287728:-1:exon

XP_001218800.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:287417-287728:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: complement(287972..287977)
location: region:287972-287977:-1
so has part: feature:287972-287977:-1:region

position:287972:-1
position: 287972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287977:-1
position: 287977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287972-287977:-1:region

TB927.1.980
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.980
so part of: sequence
location: complement(<287978..>288091)
location: region:287978-288091:-1
so has part: feature:287978-288091:-1:exon
subclass of: SO_0000010

36373227
type: Gene
SIO_000068: ncbigene

position:287978:-1
position: 287978
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:288091:-1
position: 288091
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287978-288091:-1:exon

TB927.1.980
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.980
product: hypothetical protein, unlikely
transcript id: XM_024642693.1
SIO_010081: TB927.1.980
subclass of: SO_0000673
so part of: TB927.1.980
location: complement(<287978..>288091)
location: region:287978-288091:-1
so has part: feature:287978-288091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287978-288091:-1:exon

TB927.1.980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.980
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MLSEQKGGGVKLTNGKPLAPFPQSRSVTDSAHPSLSP
SIO_010081: TB927.1.980
subclass of: SO_0000673
so part of: TB927.1.980
location: complement(287978..288091)
location: region:287978-288091:-1
so has part: feature:287978-288091:-1:exon

XP_024498401.1
type: Protein
SIO_000068: ncbiprotein

Q4GZC0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:287978-288091:-1:exon

TB927.1.990
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.990
old locus tag: Tb927.1.990
so part of: sequence
location: <288582..>289706
location: region:288582-289706:1
so has part: feature:288582-289706:1:exon
subclass of: SO_0000010

4357112
type: Gene
SIO_000068: ncbigene

position:288582:1
position: 288582
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:289706:1
position: 289706
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288582-289706:1:exon

TB927.1.990
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.990
old locus tag: Tb927.1.990
product: hypothetical protein, conserved
transcript id: XM_001218801.1
SIO_010081: TB927.1.990
subclass of: SO_0000673
so part of: TB927.1.990
location: <288582..>289706
location: region:288582-289706:1
so has part: feature:288582-289706:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:288582-289706:1:exon

TB927.1.990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.990
old locus tag: Tb927.1.990
codon start: 1
product: hypothetical protein, conserved
translation: MSGENIKNLLAPQPTVDQGPYSGKYEKRMVDLPKPTYSTFYNKNKEFDSTHPRYFKQRDAVIGPIVNDTVDPKNFLRTGQGIKHIVPPVPHKKQHRKDFLDCGDIRKRTQGAMEPADQQQKESSGMGGMGSLANTNGVGGQAGDGIREHDMSSNDPERKGEQANGGDTGLRGTGNVESAVGSCDNKNNFQGAATGDNGRCHLNSLDRSRCKKDFVTSNIIDVDNMVPKRRKDQPEDPTRRKTFGRVPGYIGRVKEVIEKERMQLKAIGEARTNNRLERVGKFVYRLDEQERLNMISKLRAKLTEKGAELNRMPFAKDTYIQMKRKSDLEKRIKEIESSLEKLEKDAVFIYSDDPRVVHWTKDAAFEEARLFASD
SIO_010081: TB927.1.990
subclass of: SO_0000673
so part of: TB927.1.990
location: 288582..289706
location: region:288582-289706:1
so has part: feature:288582-289706:1:exon

XP_001218802.1
type: Protein
SIO_000068: ncbiprotein

IPR026150
type: InterPro
SIO_000068: interpro

IPR027012
type: InterPro
SIO_000068: interpro

Q4GZB9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:288582-289706:1:exon

TB927.1.1000
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1000
old locus tag: Tb927.1.1000
so part of: sequence
location: 289877..>291155
location: region:289877-291155:1
so has part: feature:289877-291155:1:exon
subclass of: SO_0000010

4357113
type: Gene
SIO_000068: ncbigene

position:289877:1
position: 289877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291155:1
position: 291155
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289877-291155:1:exon

TB927.1.1000
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1000
old locus tag: Tb927.1.1000
product: developmentally regulated phosphoprotein
transcript id: XM_001218802.2
SIO_010081: TB927.1.1000
subclass of: SO_0000673
so part of: TB927.1.1000
location: 289877..>291155
location: region:289877-291155:1
so has part: feature:289877-291155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:289877-291155:1:exon

TB927.1.1000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1000
old locus tag: Tb927.1.1000
codon start: 1
product: developmentally regulated phosphoprotein
translation: MRRLLCLSRTRVSFMRWKFDEVAHLRDQVKALDNRIAFIEESQTIKSLLAFYSSRPLSNINTPSKFISYCAESDHNAKVFCHAELPTLLARLITTIDSFPCGLNAMLPIVSVRNTFLDSFKKLIKCDFPEDGAKSEQFLDVVKEIEEAHMKREVLLTIGTGLLQLKDLLSCHKRFILRNKWSGSYKEMEASSNDWLLDLTGPLDDFCFRMVNYNFLSRMLLNSEVVKNNMVDLVDLQIDLEKVVRNAVEDAQSICTNFYGSCPGVKFIILKDEKPMKLAYLSSTISYVVIELMKNAFRATVESHSDLTSPTIDCDDAPQVEVLVNIKEGSSHACIRISDEGLGMTVAQAKMAMSYAHTSAKKCLIGSHLGQEDGGENVAPLAGYGFGLPMSRVYARHFGGDLVLNTMEGYGTSVYYFIQI
SIO_010081: TB927.1.1000
subclass of: SO_0000673
so part of: TB927.1.1000
location: 289893..291155
location: region:289893-291155:1
so has part: feature:289893-291155:1:exon

XP_001218803.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB8
type: GOA
SIO_000068: goa

IPR003594
type: InterPro
SIO_000068: interpro

IPR018955
type: InterPro
SIO_000068: interpro

Q4GZB8
type: UniProt
SIO_000068: uniprot

position:289893:1
position: 289893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289893-291155:1:exon

TB927.1.1010
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1010
old locus tag: Tb927.1.1010
so part of: sequence
location: <291585..>293744
location: region:291585-293744:1
so has part: feature:291585-293744:1:exon
subclass of: SO_0000010

4357114
type: Gene
SIO_000068: ncbigene

position:291585:1
position: 291585
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:293744:1
position: 293744
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291585-293744:1:exon

TB927.1.1010
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1010
old locus tag: Tb927.1.1010
product: hypothetical protein, conserved
transcript id: XM_001218803.1
SIO_010081: TB927.1.1010
subclass of: SO_0000673
so part of: TB927.1.1010
location: <291585..>293744
location: region:291585-293744:1
so has part: feature:291585-293744:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:291585-293744:1:exon

TB927.1.1010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1010
old locus tag: Tb927.1.1010
codon start: 1
product: hypothetical protein, conserved
translation: MDGSECFLVTPTRWGLMLEYEREDAVALLRQKLAFFSSDSLTLTEREDVLLSSGAESSKTDSLLIYGSVALVRKEAFLWFLRVIRLTLVEDMASQVVICPQVGDAVPNLLLPPLWETGQTKSFRRWSVVYWAMRCGILRGIKKRYELTQLYLDQIVSIGAGGDDFDVREEEEAAFLQEKLFHNAHQELRESVLEAKNAPFDIYHSACNEERINLSFVVSNVPTLIVVWASWDGASLDWLRKNIFNREVTCSCDPVPRPTFVADLKIRDPWLRVVREFTSIPNGEANQPVEEVSGIAKCAQIVLISVDEEQGAAVGCLKGLIDGIDGWKSPIVPLMPLWSGPKGMLSELSSALGFSRLPYFMAVQNTRVETAKGDAKQFPRICYVTPNGQGEVPPTQSCTEGNTAELGECGMNSPDWHLVDKGERQRVTGEIERFLLSTDAPLRFHARVDKTYHSLGTPTLASSESHQPDVSSFVSLSGTISSLDLAKLKNALRVFAGVRNSAVNLNVIKPSCPLLVELNPATPTKYIRGVQRCVTCSECHKDILIDKEYHFRCIQCSQVNGTLCKICFEGAKHPAHHILLRMNVETPTTVELLWGPSNVAPLELFRGVLVTNKRNTHIGVYCNLCAQLVRGRRWKCAMCYDFDICNGCIEENCMKFSDAGEVSFVVSDGVGHGQKNTLSSSYHTKDHMFLCVRHACGSAGDACLRPVMEPNAVKLLLEG
SIO_010081: TB927.1.1010
subclass of: SO_0000673
so part of: TB927.1.1010
location: 291585..293744
location: region:291585-293744:1
so has part: feature:291585-293744:1:exon

XP_001218804.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB7
type: GOA
SIO_000068: goa

IPR000433
type: InterPro
SIO_000068: interpro

Q4GZB7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:291585-293744:1:exon

TB927.1.1010
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1010
old locus tag: Tb927.1.1010
note: Majority of WCS,TP1J20 and TP29E6 reads call G, One TP27E7 read calls A; type 1 (single nucleotide substitutions); mis-sense mutation at 102 in Tb927.1.1010 V -> I
SIO_010081: TB927.1.1010
subclass of: SO_0000673
so part of: TB927.1.1010
location: 291888
location: region:291888-291888:1
so has part: feature:291888-291888:1:exon

position:291888:1
position: 291888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291888-291888:1:exon

TB927.1.1010
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1010
old locus tag: Tb927.1.1010
note: Majority of WCS,TP1J20 and TP29E6 reads call A, One TP27E7 read calls T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1010
subclass of: SO_0000673
so part of: TB927.1.1010
location: 291935
location: region:291935-291935:1
so has part: feature:291935-291935:1:exon

position:291935:1
position: 291935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291935-291935:1:exon

TB927.1.1020
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1020
old locus tag: Tb927.1.1020
so part of: sequence
location: <294228..>295508
location: region:294228-295508:1
so has part: feature:294228-295508:1:exon
subclass of: SO_0000010

4357115
type: Gene
SIO_000068: ncbigene

position:294228:1
position: 294228
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:295508:1
position: 295508
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294228-295508:1:exon

TB927.1.1020
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1020
old locus tag: Tb927.1.1020
product: hypothetical protein, conserved
transcript id: XM_001218804.1
SIO_010081: TB927.1.1020
subclass of: SO_0000673
so part of: TB927.1.1020
location: <294228..>295508
location: region:294228-295508:1
so has part: feature:294228-295508:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:294228-295508:1:exon

TB927.1.1020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1020
old locus tag: Tb927.1.1020
codon start: 1
product: hypothetical protein, conserved
translation: MGCAGSQQQKPRSNQNIRTKDEGVGPTEPFGAQNGDEFRSCELSTVERPIRLASPGSLSRLEAQQNCRETSHRRRKASKISGKDNFYFSHCSVGGNGRSKSRGTYKLASQDTFADGEMTLTILSNSSSPQLLRIQPSERAQQGDGTWEWWYEQVEKLLVTKDCNSRTRLQDIPNRLTRQYDADKEHVELDLSWCFMERSAPYVLSRLLASPYLVEIRWVTALRLDGNYFTDDGFGSMLEVMSTVNETQLTLPLLRHLYLNNMNLDHHSLHGILFYLFPVDDACYPSVGLTSDSRAIAGRAFGKPPKAYLPFNSAPRIALFPSLTVLSLCDNPGIGNLGLIELLRCFLASHYEHRVLPVLDMSRCGIDEVGARCIREYIEKLPLAVEENRPVVTTQRIVLYGNRHSADRVVAAATDDSPYDTASVVG
SIO_010081: TB927.1.1020
subclass of: SO_0000673
so part of: TB927.1.1020
location: 294228..295508
location: region:294228-295508:1
so has part: feature:294228-295508:1:exon

XP_001218805.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:294228-295508:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS and TP29E6 call A, TP27E7 and TP1J20 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 295715
location: region:295715-295715:1
so has part: feature:295715-295715:1:region

position:295715:1
position: 295715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295715-295715:1:region

TB927.1.1030
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1030
old locus tag: Tb927.1.1030
so part of: sequence
location: <296968..>298341
location: region:296968-298341:1
so has part: feature:296968-298341:1:exon
subclass of: SO_0000010

4357116
type: Gene
SIO_000068: ncbigene

position:296968:1
position: 296968
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:298341:1
position: 298341
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296968-298341:1:exon

TB927.1.1030
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1030
old locus tag: Tb927.1.1030
product: hypothetical protein, conserved; leucine-rich repeat protein (LRRP), putative
transcript id: XM_001218805.1
SIO_010081: TB927.1.1030
subclass of: SO_0000673
so part of: TB927.1.1030
location: <296968..>298341
location: region:296968-298341:1
so has part: feature:296968-298341:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:296968-298341:1:exon

TB927.1.1030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1030
old locus tag: Tb927.1.1030
codon start: 1
product: hypothetical protein, conserved; leucine-rich repeat protein (LRRP), putative
translation: MSRFAASGDGKVVARKERALMSVKNFIELIPLDIDLETTRQLVLKGKNITAIPPNIGTLLREVRRLDLSTNDVRDITPLATLANLTSINLTRNPHLLSIAPLASLHLTVVVVAHCGLRSLVGLEGSAGTLKTLVVNDNNLLLRSPSGKCVEGAGADEIATAVKNYDVIADLTECETLVLSRNPLLCSLYAGPTEEDKTHPQKKAEAGEETKCEPDWEHPLSAIVKMTCLKKLSLSGCGLTSLPRHWFIPKVTELRLSQNKLKSLVPEGVLFRSVKILDVSHNELKEASTLRRCRFVYHLGVRGNPFVEDGNVSTGAKRKAGKGDDDNKSESPPPAKKNLGVVLQYLMRIMPHLEMVDGTPLAQLLPTEQDDERKETVEFTANKQEESAESVADDGGSKVPEEEDNALEPPETSELGKPAIVRRGQTNLLATKKRRLSAEGAAVTQILLKRKTEASGW
SIO_010081: TB927.1.1030
subclass of: SO_0000673
so part of: TB927.1.1030
location: 296968..298341
location: region:296968-298341:1
so has part: feature:296968-298341:1:exon

XP_001218806.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:296968-298341:1:exon

TB927.1.1030
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1030
old locus tag: Tb927.1.1030
note: WCS, TP1J20 and TP29E6 call C, TP27E7 calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 40 in Tb927.1.1030 R -> W
SIO_010081: TB927.1.1030
subclass of: SO_0000673
so part of: TB927.1.1030
location: 297085
location: region:297085-297085:1
so has part: feature:297085-297085:1:exon

position:297085:1
position: 297085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:297085-297085:1:exon

TB927.1.1040
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1040
old locus tag: Tb927.1.1040
so part of: sequence
location: <298771..>299280
location: region:298771-299280:1
so has part: feature:298771-299280:1:exon
subclass of: SO_0000010

4357180
type: Gene
SIO_000068: ncbigene

position:298771:1
position: 298771
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:299280:1
position: 299280
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:298771-299280:1:exon

TB927.1.1040
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1040
old locus tag: Tb927.1.1040
product: hypothetical protein, conserved
transcript id: XM_001218806.1
SIO_010081: TB927.1.1040
subclass of: SO_0000673
so part of: TB927.1.1040
location: <298771..>299280
location: region:298771-299280:1
so has part: feature:298771-299280:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:298771-299280:1:exon

TB927.1.1040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1040
old locus tag: Tb927.1.1040
codon start: 1
product: hypothetical protein, conserved
translation: MWRVKPLVWLAARDVNTLRTVSSLHSRTRQEDVTISGNDKVTRNRERNYAAAPSGCFRFDLPTASLHSELSRGRRYDVPKGKSCSGQWASKGKICTTTNNGRAAVGTGKEPSMGPLPSSRSSGTRFPVDYRRMKESHKVEAGNAVNSTISSSDSRAPSKRISVRVIALE
SIO_010081: TB927.1.1040
subclass of: SO_0000673
so part of: TB927.1.1040
location: 298771..299280
location: region:298771-299280:1
so has part: feature:298771-299280:1:exon

XP_001218807.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:298771-299280:1:exon

TB927.1.1050
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1050
old locus tag: Tb927.1.1050
so part of: sequence
location: <300097..>303453
location: region:300097-303453:1
so has part: feature:300097-303453:1:exon
subclass of: SO_0000010

4357181
type: Gene
SIO_000068: ncbigene

position:300097:1
position: 300097
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:303453:1
position: 303453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300097-303453:1:exon

TB927.1.1050
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1050
old locus tag: Tb927.1.1050
product: hypothetical protein, conserved
transcript id: XM_001218807.1
SIO_010081: TB927.1.1050
subclass of: SO_0000673
so part of: TB927.1.1050
location: <300097..>303453
location: region:300097-303453:1
so has part: feature:300097-303453:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:300097-303453:1:exon

TB927.1.1050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1050
old locus tag: Tb927.1.1050
codon start: 1
product: hypothetical protein, conserved
translation: MNVTNPSTVRYADAFMSYLRFLEKDVWWTIVYVIFLAWMYLFHAPFRVHNVWRTDWYAQVTKVLQVWIGVVVFLFHTGSGFFQPQRSLQAEICNADDDTVATIFFPIFSTTTLIILYIHSKKRVWGLGVTYGSSTIVVVLNSLLLSLFSTVHFAYGMRIQDFEHSSLLKGAVGVLFPSPKQTLFPTLLLLSVMNVLFITFDYQYKKRCGFDPLRGLLWSEVCRSRKAHEVVPTTIRDGCDWRKLQPKPKRISKVEQPWIVSPEGGKRLSFALSSLEVKQLSVQYPVNRPGMVPWFSTFIAGTALQSVLGNSLNFLTFDQRAVESQMNPKVFKLSFTKHRSKISKSYSLSRVSECSPSTSVDAVCCDPYGDDDYENVWFDFVADVGDGFNSTYEMARLMAQPFLRLASSDSVQTRSGLVNSVSVRDGGGRRGLMTPPLTAGDGAFLAVEGNGQQNRCGRTLSMCDYEPQENFSLPRASFVVVGGDLAYPNPTNETYRTRLLEPYNNALRCCAPLCKLVKKWYNRLVVPEEDNKDVARIHMLSASKVSEMTQRRDIADMCLGEDEVVHSTPLLFAIPGNHDWLDGLVTFKKFIIDESWMGGWFMPQKSSFFVINLPYNWFLLCVDTGSVTDIDPGQRNYFLNYIEEHLDVSSCVILISHEPGWIYEAMNTNLTSTMQPELHRVVDALGTRLRMRLCGDIHHYSRHTPTDALSEAPVLVVSGGGGAFLHGARNNTVIYQGTEYKREAAFPRDNHVTSFLTRLVGFRLINWKFDIIAGFMCFGLITSSLPLNMEDKKLEEIVDIHVLFCSTVTRTAELCLYTFDKGIISLFVAVCFFIGFFSVGSGRKSVCFRIAYSLCWTALVVFASSGMLAVVQTTMAYMMNHGLILSTKEQWSSMLESQVRTAADDTSNHLIEWLGDEHALSRGIESLRSAAHGSVLVGAACTLLRSMDMIENLAYLSYHVGTNVTGTLSHTTNRVQVVLYYLHILLIYWLLATPLLSFIIGVFLFVSVHYFDLTYDASYSSFQIEDYKHFLRFCLDGRTRCLHAYVVAEKFVPKVWICDGRHVTECRDERTKHLPPHLKKHPSRWVPHGVSGTDYTPTVLEHFVVRPHRVTQPDPLRE
SIO_010081: TB927.1.1050
subclass of: SO_0000673
so part of: TB927.1.1050
location: 300097..303453
location: region:300097-303453:1
so has part: feature:300097-303453:1:exon

XP_001218808.1
type: Protein
SIO_000068: ncbiprotein

IPR029052
type: InterPro
SIO_000068: interpro

Q4GZB3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:300097-303453:1:exon

TB927.1.1050
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1050
old locus tag: Tb927.1.1050
note: Signal anchor predicted for Tb927.1.1050 by SignalP 2.0 HMM (Signal peptide probabilty 0.001, signal anchor probability 0.871) with cleavage site probability 0.000 between residues 53 and 54
SIO_010081: TB927.1.1050
subclass of: SO_0000673
so part of: TB927.1.1050
location: 300097..300253
location: region:300097-300253:1
so has part: feature:300097-300253:1:exon

position:300253:1
position: 300253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300097-300253:1:exon

TB927.1.1050
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1050
old locus tag: Tb927.1.1050
note: 9 probable transmembrane helices predicted for Tb927.1.1050 by TMHMM2.0 at aa 25-42, 63-85, 100-118, 125-147, 183-200, 764-786, 822-841, 854-876 and 984-1006
SIO_010081: TB927.1.1050
subclass of: SO_0000673
so part of: TB927.1.1050
location: join(300169..300222,300283..300351,300394..300450,300469..300537,300643..300696,302386..302454,302560..302619,302656..302724,303046..303114)
location: region:300169-303114:1
so has part: feature:300169-300222:1:exon
so has part: feature:300283-300351:1:exon
so has part: feature:300394-300450:1:exon
so has part: feature:300469-300537:1:exon
so has part: feature:300643-300696:1:exon
so has part: feature:302386-302454:1:exon
so has part: feature:302560-302619:1:exon
so has part: feature:302656-302724:1:exon
so has part: feature:303046-303114:1:exon

position:300169:1
position: 300169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303114:1
position: 303114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300169-300222:1:exon

position:300222:1
position: 300222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:300283-300351:1:exon

position:300283:1
position: 300283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300351:1
position: 300351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:300394-300450:1:exon

position:300394:1
position: 300394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300450:1
position: 300450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:300469-300537:1:exon

position:300469:1
position: 300469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300537:1
position: 300537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:300643-300696:1:exon

position:300643:1
position: 300643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300696:1
position: 300696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:302386-302454:1:exon

position:302386:1
position: 302386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302454:1
position: 302454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:302560-302619:1:exon

position:302560:1
position: 302560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302619:1
position: 302619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:302656-302724:1:exon

position:302656:1
position: 302656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302724:1
position: 302724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:303046-303114:1:exon

position:303046:1
position: 303046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TB927.1.1060
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1060
old locus tag: Tb927.1.1060
so part of: sequence
location: <303934..>304851
location: region:303934-304851:1
so has part: feature:303934-304851:1:exon
subclass of: SO_0000010

4357182
type: Gene
SIO_000068: ncbigene

position:303934:1
position: 303934
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:304851:1
position: 304851
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:303934-304851:1:exon

TB927.1.1060
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1060
old locus tag: Tb927.1.1060
product: hypothetical protein, conserved
transcript id: XM_001218808.1
SIO_010081: TB927.1.1060
subclass of: SO_0000673
so part of: TB927.1.1060
location: <303934..>304851
location: region:303934-304851:1
so has part: feature:303934-304851:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:303934-304851:1:exon

TB927.1.1060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1060
old locus tag: Tb927.1.1060
codon start: 1
product: hypothetical protein, conserved
translation: MSVQCQVAHPYLLLKSLSLLTISKDAWAEVEFTESSVTLDVEGAGQSATATAVLPTSIFSQYTTTGVRFAVHLGMFRNALLLGGPSQLNSMSTSRVVLSYPTKEARLLVELSDGKITLRSKLITQRPKEYPLDLQFSHARILNQVTLPGDAARAAIEDLVTAQCSHAVVTLDPREGVLFRGEGGPYGSALIKIPLNSDVISSIFDGDERVETHVLQSHLVLVCGVRSGGKQRRNTLVPANDFLMGPNSNGGGGYGQQQAAVGGFERLMLQINEARQLSVVHMLRERDIPVTVTLVVSPIYNLHDQ
SIO_010081: TB927.1.1060
subclass of: SO_0000673
so part of: TB927.1.1060
location: 303934..304851
location: region:303934-304851:1
so has part: feature:303934-304851:1:exon

XP_001218809.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB2
type: GOA
SIO_000068: goa

IPR003021
type: InterPro
SIO_000068: interpro

Q4GZB2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:303934-304851:1:exon

TB927.1.1070
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1070
old locus tag: Tb927.1.1070
so part of: sequence
location: <305147..>305380
location: region:305147-305380:1
so has part: feature:305147-305380:1:exon
subclass of: SO_0000010

4357183
type: Gene
SIO_000068: ncbigene

position:305147:1
position: 305147
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:305380:1
position: 305380
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305147-305380:1:exon

TB927.1.1070
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1070
old locus tag: Tb927.1.1070
product: hypothetical protein, unlikely
transcript id: XM_001218809.1
SIO_010081: TB927.1.1070
subclass of: SO_0000673
so part of: TB927.1.1070
location: <305147..>305380
location: region:305147-305380:1
so has part: feature:305147-305380:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:305147-305380:1:exon

TB927.1.1070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1070
old locus tag: Tb927.1.1070
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MADLSLQVAQTPNDILKKKKKRSAVVLGWHVGNGGHASASAASLSYCPNGGITLSVLAQLSLAMRVKGALSGKPCRI
SIO_010081: TB927.1.1070
subclass of: SO_0000673
so part of: TB927.1.1070
location: 305147..305380
location: region:305147-305380:1
so has part: feature:305147-305380:1:exon

XP_001218810.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:305147-305380:1:exon

TB927.1.1080
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1080
old locus tag: Tb927.1.1080
so part of: sequence
location: <305843..>307300
location: region:305843-307300:1
so has part: feature:305843-307300:1:exon
subclass of: SO_0000010

4357184
type: Gene
SIO_000068: ncbigene

position:305843:1
position: 305843
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:307300:1
position: 307300
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305843-307300:1:exon

TB927.1.1080
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1080
old locus tag: Tb927.1.1080
product: hypothetical protein, conserved
transcript id: XM_001218810.1
SIO_010081: TB927.1.1080
subclass of: SO_0000673
so part of: TB927.1.1080
location: <305843..>307300
location: region:305843-307300:1
so has part: feature:305843-307300:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:305843-307300:1:exon

TB927.1.1080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1080
old locus tag: Tb927.1.1080
codon start: 1
product: hypothetical protein, conserved
translation: MSQLSELLNTSQLTKYYALIQFLSSHTNTEYTLAQLDYLLPRGASLQRFPASWIEFMEEGLCNNQNVELYRRPVAGGEAAGENISSLVQEEREEIVLICRRPVINDLKDLARLLQSPATVPDVEGCVALHTDQITLNENLLRASQTQGLLYYFPDNYTKSREHRSAKSRRSSSQSEIVSNLMRNEDIEGLLNEESKDGKLDLPAGVTAQFMLYNRRGVPVRGRNSFPMRYNVGDRAMVIVERSVPPDADHVPAKPPLVTTTLGRPVGMSSVGGSDGSTPVEIRVKVSANSVGSQRTCISIKAQVKGRVVLSLFVDSRETIIPLEVLDESVGMPGVIVGREQQPLLPVPDDIRINDPAIWGSGNGDEQAGRGGVSGIDRDSGSCGNSALSWWLNPSPAILEVRDLTLPDSETFAAASRAVWNVHRADESAMKAVRKALKDQRNSETTRKKRNKRSRPRDLRNSHMIHYGFDASIPFGTQRSFPKDA
SIO_010081: TB927.1.1080
subclass of: SO_0000673
so part of: TB927.1.1080
location: 305843..307300
location: region:305843-307300:1
so has part: feature:305843-307300:1:exon

XP_001218811.1
type: Protein
SIO_000068: ncbiprotein

Q4GZB0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:305843-307300:1:exon

TB927.1.1090
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1090
old locus tag: Tb927.1.1090
so part of: sequence
location: <307648..>308220
location: region:307648-308220:1
so has part: feature:307648-308220:1:exon
subclass of: SO_0000010

4357185
type: Gene
SIO_000068: ncbigene

position:307648:1
position: 307648
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:308220:1
position: 308220
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307648-308220:1:exon

TB927.1.1090
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1090
old locus tag: Tb927.1.1090
product: hypothetical protein, unlikely
transcript id: XM_001218811.1
SIO_010081: TB927.1.1090
subclass of: SO_0000673
so part of: TB927.1.1090
location: <307648..>308220
location: region:307648-308220:1
so has part: feature:307648-308220:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:307648-308220:1:exon

TB927.1.1090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1090
old locus tag: Tb927.1.1090
codon start: 1
product: hypothetical protein, unlikely
translation: MVWFSAPDNSEFLGDPLPRKARQPKVHLATEVSVEASVPWEDVSSWECGSQTSRNSSRSSTSDNAANGHVANINKFHDRMELIRRLNKRRRNNSTCRESGRTEQWTCQPLYVGVSTFPEMKEMSPKSVGGENVPFWNGAVVHDSPLMTDRSGSEVDKKPLKTRKCAWNLTYVRKNDWPEAHQMHEGDAII
SIO_010081: TB927.1.1090
subclass of: SO_0000673
so part of: TB927.1.1090
location: 307648..308220
location: region:307648-308220:1
so has part: feature:307648-308220:1:exon

XP_001218812.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:307648-308220:1:exon

TB927.1.1090
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1090
old locus tag: Tb927.1.1090
note: Majority of WCS, TP29E6 and TP1J10 call G, Two WCS reads call A; type 1 (single nucleotide substitutions); mis-sense mutation at 138 in Tb927.1.1090 G -> S
SIO_010081: TB927.1.1090
subclass of: SO_0000673
so part of: TB927.1.1090
location: 308059
location: region:308059-308059:1
so has part: feature:308059-308059:1:exon

position:308059:1
position: 308059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308059-308059:1:exon

TB927.1.1100
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1100
old locus tag: Tb927.1.1100
so part of: sequence
location: <308704..>311616
location: region:308704-311616:1
so has part: feature:308704-311616:1:exon
subclass of: SO_0000010

4357186
type: Gene
SIO_000068: ncbigene

position:308704:1
position: 308704
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:311616:1
position: 311616
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308704-311616:1:exon

TB927.1.1100
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1100
old locus tag: Tb927.1.1100
product: hypothetical protein, conserved
transcript id: XM_001218812.1
SIO_010081: TB927.1.1100
subclass of: SO_0000673
so part of: TB927.1.1100
location: <308704..>311616
location: region:308704-311616:1
so has part: feature:308704-311616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:308704-311616:1:exon

TB927.1.1100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1100
old locus tag: Tb927.1.1100
codon start: 1
product: hypothetical protein, conserved
translation: MPKSSSAYRHDLPEDLLELIDHTTKGVQRLYESTKRASRAVSRNQRQAPTTLPSYSSCSECTSETEHAATQLRNGRGTSVPRQKSSSSRAKERKASAPAVKSIRDEGTELTYDDGLPLHPHPLSCVGHEKNGKGRRRSTDSGDRVTARQQQWGYSQPLPTSGADMGGPSHMRMGSTTFSSDNPTHHPVFNRSASRQQMSTSSAFSSSAAFEQDHSSSLARKSWKDTFRSLLTGDAAPPSFSNEAAIETISSRSPTPFTQGANAVPDKAPSHCGSRVALEDADRHSRKPRSPLQEPEEEDIEHLRHRLREQEVSHKEELAQLRTKHCMEVTRLRRAALEARQKILDEVTAQLQSSADVKVKLLRAEIESERQRADGVQKMLEEDKAVIERLRGELDVANNNVKTLRKDLSTKTKTIAKLNDNLEGTQRELAECREEVGKHSRNLAESTRREKVAISREKEQRNAVRQLEEQLNERERRSREELARLQEELRTMSDGYEKLIKEASEKLSVLEKVERKYHALKEQHRDEKKQSEVVTSETAVLKGEKEELERKVEELQDELEAFRLQVARKEHELREERVGHSQMVDEIVQKMEQQQEKSAREQEDLQKALRNSEERLARSQRATEGLERQLQEEQAHSKELLLKLEEGTLRHKEELAATRRSAATYHQQSEGVISSLKRQLREKDTKLEALANAASEPLHRLRSQLEDERSKRARLEEQFNQYKQKAKLAQEAALREIRREQQRVSSVGRTQPKSGLMPRPRLSGHEEGDLMFPTPPSASSASPAGTIAVADVSPMPTPTYPPPLRDTDVAGGSSRTPVKVANSVSHAPQMHDRHNEGNTVTPPQYVGHRSGWDSVGSISNISCSSPLCSSRFGDLRSVDESVVSAGDGRPAAHALANGNGMSPAGQTIDERMVQHELVLQEFHKSAAEVFRKITGNRDEFLARCTSAVRSASHRTADKEHISVHGNGVLD
SIO_010081: TB927.1.1100
subclass of: SO_0000673
so part of: TB927.1.1100
location: 308704..311616
location: region:308704-311616:1
so has part: feature:308704-311616:1:exon

XP_001218813.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA8
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:308704-311616:1:exon

TB927.1.1110
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1110
old locus tag: Tb927.1.1110
so part of: sequence
location: <311739..>311906
location: region:311739-311906:1
so has part: feature:311739-311906:1:exon
subclass of: SO_0000010

4357187
type: Gene
SIO_000068: ncbigene

position:311739:1
position: 311739
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:311906:1
position: 311906
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311739-311906:1:exon

TB927.1.1110
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1110
old locus tag: Tb927.1.1110
product: hypothetical protein, unlikely
transcript id: XM_001218813.1
SIO_010081: TB927.1.1110
subclass of: SO_0000673
so part of: TB927.1.1110
location: <311739..>311906
location: region:311739-311906:1
so has part: feature:311739-311906:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:311739-311906:1:exon

TB927.1.1110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1110
old locus tag: Tb927.1.1110
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MCSRSRMWRHMIAPECAVVKAGLRHLFLLLFFRSPNLWTILVRYCTWVPWISTKC
SIO_010081: TB927.1.1110
subclass of: SO_0000673
so part of: TB927.1.1110
location: 311739..311906
location: region:311739-311906:1
so has part: feature:311739-311906:1:exon

XP_001218814.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:311739-311906:1:exon

TB927.1.1110
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1110
old locus tag: Tb927.1.1110
note: Signal peptide predicted for Tb927.1.1110 by SignalP 2.0 HMM (Signal peptide probabilty 0.798, signal anchor probability 0.000) with cleavage site probability 0.464 between residues 39 and 40
SIO_010081: TB927.1.1110
subclass of: SO_0000673
so part of: TB927.1.1110
location: 311739..311853
location: region:311739-311853:1
so has part: feature:311739-311853:1:exon

position:311853:1
position: 311853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311739-311853:1:exon

TB927.1.1120
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1120
old locus tag: Tb927.1.1120
so part of: sequence
location: <312457..>313566
location: region:312457-313566:1
so has part: feature:312457-313566:1:exon
subclass of: SO_0000010

4357188
type: Gene
SIO_000068: ncbigene

position:312457:1
position: 312457
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:313566:1
position: 313566
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312457-313566:1:exon

TB927.1.1120
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1120
old locus tag: Tb927.1.1120
product: hypothetical protein, conserved
transcript id: XM_001218814.1
SIO_010081: TB927.1.1120
subclass of: SO_0000673
so part of: TB927.1.1120
location: <312457..>313566
location: region:312457-313566:1
so has part: feature:312457-313566:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:312457-313566:1:exon

TB927.1.1120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1120
old locus tag: Tb927.1.1120
codon start: 1
product: hypothetical protein, conserved
translation: MSRGGIFGDPRKKGRTATDKYSKKEPPQSKNRTETSSAAKVSKKAGALYGPVVVHSSGCASRDSANDRRGIPFKNKHEEREYKKAKHIPKYAPNPTGGKGENGEPTPRPSGASSAAQRRAIRRVRDDDSVLEHFRTKLSASTFRLLNEQIYNSPISSVAELLRDPSTYADYHNGYRQQIQQWPIKPYDVILQALLEDRRGRFVANKAKSMPGYIPSSWVIADMGCGDAQVAQALCPKGYTVHSFDLHAMNEYVTVANIAHVPLEKKSVDICIFSLSLMSTDYIKCLYEAFRILKPKRLLKIVEVRSRVPHPRRFAELVEGIGFTLDYHDTVGDYFVAYDFIKLDGQESANQHPKYDPQEVLVPSLYKKR
SIO_010081: TB927.1.1120
subclass of: SO_0000673
so part of: TB927.1.1120
location: 312457..313566
location: region:312457-313566:1
so has part: feature:312457-313566:1:exon

XP_001218815.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA6
type: GOA
SIO_000068: goa

IPR007823
type: InterPro
SIO_000068: interpro

Q4GZA6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:312457-313566:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS, TP29E6 and TP1J20 call G, TP27E7 calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 313650
location: region:313650-313650:1
so has part: feature:313650-313650:1:region

position:313650:1
position: 313650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313650-313650:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of TGTA in TP27E7; type 5 (insertion/deletion of more than 3 nucleotides in microsatellites)
so part of: sequence
location: 313712..313713
location: region:313712-313713:1
so has part: feature:313712-313713:1:region

position:313712:1
position: 313712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313713:1
position: 313713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313712-313713:1:region

TB927.1.1130
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1130
old locus tag: Tb927.1.1130
so part of: sequence
location: <313980..>315833
location: region:313980-315833:1
so has part: feature:313980-315833:1:exon
subclass of: SO_0000010

4357189
type: Gene
SIO_000068: ncbigene

position:313980:1
position: 313980
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:315833:1
position: 315833
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313980-315833:1:exon

TB927.1.1130
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1130
old locus tag: Tb927.1.1130
product: glycerol-3-phosphate dehydrogenase (FAD-dependent), putative
transcript id: XM_001218815.1
SIO_010081: TB927.1.1130
subclass of: SO_0000673
so part of: TB927.1.1130
location: <313980..>315833
location: region:313980-315833:1
so has part: feature:313980-315833:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313980-315833:1:exon

TB927.1.1130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1130
old locus tag: Tb927.1.1130
EC number: 1.1.5.3
codon start: 1
product: glycerol-3-phosphate dehydrogenase (FAD-dependent), putative
translation: MGRYTRRFTLRVGVGAVAFACAWAVCHRWNLRRSGVISFPEEVVHFQPLPRDLKLRQMKESSSFENPFDALIIGGGVTGLYTAVDAAKRGLRVAVVGAGDFASGYSGTSPPLLPGAFPYVQRALRQRDAKWLRRAAEAWEARTIWSNVAPSIVNNNVRTLVPSAHAMEFMELAATAVVATLLSPFFGPWRSCSFVRGKHLLEEFPGAEDKAVGAIIVRDATVDGAAAAIALARTADALGAVTLNYAQVERITEIDNESTSSGRANFVVTISDVNACCGLGDVATSKVEMYTRSIVNCAGALVDEVKQLFPGNSSDNVPTAVERHQLSSYLVMPATALLTGERITGWAGSARALMASSTSYAFSSVMIVPWFDECVLLGPSVAPFSLSPTRAAAAATISGAVPMHSLQASGGHASGADDSTCERICAALKASGVEVDKGRILSCISTVVPVLRDPSSVPWLSNVLSEGYHIAAGGENRHRVHIYGGSLGLARLIAEKAVDKLLNNGITFNVEEVKRLRPCETKWLPLVFGSAGAGMDYYDSLSPLERVRTLVREQYAVRLVDVVSRRTRIAYSSPAEALAALPALAELMRVELGWSSRRAKWELEEARSFILAATALT
SIO_010081: TB927.1.1130
subclass of: SO_0000673
so part of: TB927.1.1130
location: 313980..315833
location: region:313980-315833:1
so has part: feature:313980-315833:1:exon

XP_001218816.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA5
type: GOA
SIO_000068: goa

IPR000447
type: InterPro
SIO_000068: interpro

IPR006076
type: InterPro
SIO_000068: interpro

Q4GZA5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:313980-315833:1:exon

TB927.1.1130
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1130
old locus tag: Tb927.1.1130
note: Signal peptide predicted for Tb927.1.1130 by SignalP 2.0 HMM (Signal peptide probabilty 0.914, signal anchor probability 0.082) with cleavage site probability 0.415 between residues 24 and 25
SIO_010081: TB927.1.1130
subclass of: SO_0000673
so part of: TB927.1.1130
location: 313980..314049
location: region:313980-314049:1
so has part: feature:313980-314049:1:exon

position:314049:1
position: 314049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313980-314049:1:exon

TB927.1.1130
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1130
old locus tag: Tb927.1.1130
note: 1 probable transmembrane helix predicted for Tb927.1.1130 by TMHMM2.0 at aa 12-31
SIO_010081: TB927.1.1130
subclass of: SO_0000673
so part of: TB927.1.1130
location: 314013..314072
location: region:314013-314072:1
so has part: feature:314013-314072:1:exon

position:314013:1
position: 314013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:314072:1
position: 314072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314013-314072:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call G, One WCS read calls C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 315911
location: region:315911-315911:1
so has part: feature:315911-315911:1:region

position:315911:1
position: 315911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315911-315911:1:region

TB927.1.1140
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1140
old locus tag: Tb927.1.1140
so part of: sequence
location: <316190..>317263
location: region:316190-317263:1
so has part: feature:316190-317263:1:exon
subclass of: SO_0000010

4357190
type: Gene
SIO_000068: ncbigene

position:316190:1
position: 316190
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:317263:1
position: 317263
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316190-317263:1:exon

TB927.1.1140
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1140
old locus tag: Tb927.1.1140
product: hypothetical protein, conserved
transcript id: XM_001218816.1
SIO_010081: TB927.1.1140
subclass of: SO_0000673
so part of: TB927.1.1140
location: <316190..>317263
location: region:316190-317263:1
so has part: feature:316190-317263:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:316190-317263:1:exon

TB927.1.1140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1140
old locus tag: Tb927.1.1140
codon start: 1
product: hypothetical protein, conserved
translation: MATIYHEGFKVRYVTRGIGSWVLYFLSLAALFILPFVIATSMGGIWLTNSHFTQHPRLKFSGRCLLRYTTVRGKEKLWTCSDAFNEKLLYGHAELDTLPFFTIYEEDRDSDGSVDCVTIVLGLPVNSLGSRVENSFPPPDEMDAIERVEFIPEFIYEIIHPSIHLNMTAAPLIVFQRPGGGHASASGTGGAHTGGPVCASTSGDILFHTTEPLYSWSNVHYAHTYADSPLDAVESIDDVLNVPRFAQKYASRNQSLLFRRYAESAGGASLLPDITYDRVLGEDMDTVGDFTWKLTLRVQDANVPYVSSIPELIKWAWIQYFTIAYVIQWVLWKLRGMLLKSGMIGSTAIFHRGYAPR
SIO_010081: TB927.1.1140
subclass of: SO_0000673
so part of: TB927.1.1140
location: 316190..317263
location: region:316190-317263:1
so has part: feature:316190-317263:1:exon

XP_001218817.1
type: Protein
SIO_000068: ncbiprotein

IPR019306
type: InterPro
SIO_000068: interpro

Q4GZA4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:316190-317263:1:exon

TB927.1.1140
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1140
old locus tag: Tb927.1.1140
note: Signal anchor predicted for Tb927.1.1140 by SignalP 2.0 HMM (Signal peptide probabilty 0.268, signal anchor probability 0.727) with cleavage site probability 0.195 between residues 39 and 40
SIO_010081: TB927.1.1140
subclass of: SO_0000673
so part of: TB927.1.1140
location: 316190..316304
location: region:316190-316304:1
so has part: feature:316190-316304:1:exon

position:316304:1
position: 316304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316190-316304:1:exon

TB927.1.1140
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1140
old locus tag: Tb927.1.1140
note: 1 probable transmembrane helix predicted for Tb927.1.1140 by TMHMM2.0 at aa 21-43
SIO_010081: TB927.1.1140
subclass of: SO_0000673
so part of: TB927.1.1140
location: 316250..316318
location: region:316250-316318:1
so has part: feature:316250-316318:1:exon

position:316250:1
position: 316250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316318:1
position: 316318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316250-316318:1:exon

TB927.1.1150
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1150
old locus tag: Tb927.1.1150
so part of: sequence
location: <317829..>319271
location: region:317829-319271:1
so has part: feature:317829-319271:1:exon
subclass of: SO_0000010

4357191
type: Gene
SIO_000068: ncbigene

position:317829:1
position: 317829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:319271:1
position: 319271
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317829-319271:1:exon

TB927.1.1150
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1150
old locus tag: Tb927.1.1150
product: zeta tubulin
transcript id: XM_001218817.1
SIO_010081: TB927.1.1150
subclass of: SO_0000673
so part of: TB927.1.1150
location: <317829..>319271
location: region:317829-319271:1
so has part: feature:317829-319271:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:317829-319271:1:exon

TB927.1.1150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1150
old locus tag: Tb927.1.1150
codon start: 1
product: zeta tubulin
translation: MAIVVVQVGQCGNQLGEELWRQLSIATDKGAVRSPFFTSNRKARCVMVDSEPKVVQTVYNRYADIMRAENVVCGHSGRGNHWALGYYGLNNPKSSRCAEKAAASRPFQVTKDQRRGDNFVVRDALRAIYAETRRTDDTEEFEAILVLHSLAGGTGSGMASLLLEKIRYYFIEPTEDELANADEKAEADMMWNDGLDGMLMHKRRALFLISIAVAPQSIGEISTQSLNAALTLHALRIVDAVLLLRNDDCLRARDDRAAGPRGAGGKETISSSSSLSLLKPCATFTEVNEVFVTLLMPVLLYGVGESPICNLVLSCSPSHRKMNNILTIVPTPQRHYLRFKESSILSRFYCITGAKSHLPSVCPTVPVELLHTSRSLQSTDPVHSREEVKIPKPLYLSFVQPGSKKRSPAATLLTEIEGVLVMNQARELNAQLLFPLLRTAAVKVKAGAFMSTFLDSGVAAERIQLAIKSVALKLADAEED
SIO_010081: TB927.1.1150
subclass of: SO_0000673
so part of: TB927.1.1150
location: 317829..319271
location: region:317829-319271:1
so has part: feature:317829-319271:1:exon

XP_001218818.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA3
type: GOA
SIO_000068: goa

IPR000217
type: InterPro
SIO_000068: interpro

IPR003008
type: InterPro
SIO_000068: interpro

IPR004058
type: InterPro
SIO_000068: interpro

IPR017975
type: InterPro
SIO_000068: interpro

Q4GZA3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:317829-319271:1:exon

TB927.1.1150
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1150
old locus tag: Tb927.1.1150
note: Deletion of TCT in two WCS reads and TP27E7; type 3 (insertion/deletion of 3 nucleotides)
SIO_010081: TB927.1.1150
subclass of: SO_0000673
so part of: TB927.1.1150
location: 318639..318641
location: region:318639-318641:1
so has part: feature:318639-318641:1:exon

position:318639:1
position: 318639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318641:1
position: 318641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318639-318641:1:exon

TB927.1.1160
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1160
old locus tag: Tb927.1.1160
so part of: sequence
location: <319653..>321248
location: region:319653-321248:1
so has part: feature:319653-321248:1:exon
subclass of: SO_0000010

4357192
type: Gene
SIO_000068: ncbigene

position:319653:1
position: 319653
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:321248:1
position: 321248
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319653-321248:1:exon

TB927.1.1160
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1160
old locus tag: Tb927.1.1160
product: hypothetical protein, conserved
transcript id: XM_001218818.1
SIO_010081: TB927.1.1160
subclass of: SO_0000673
so part of: TB927.1.1160
location: <319653..>321248
location: region:319653-321248:1
so has part: feature:319653-321248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:319653-321248:1:exon

TB927.1.1160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1160
old locus tag: Tb927.1.1160
codon start: 1
product: hypothetical protein, conserved
translation: MRPLRCSFGRRHRVTSAAFGVSQFPSSSSTFSASCRWVVIPPVEPITSASASASSSSSSSRKGECRTSYRFAVKDEERGLYDHGVTPDARTLAAEAEAQYRASSEFLHAPAGGLPAPELHMEVDGTSVSCIAAPFGEEYVPSSKERFAHRGHVGDLSRQRTSDRKYLLDARSHLNIRKERQLSELLSAPMPLLQKSNEIQQMLLSDFYPQNLVVSSRNVEAVIALWAQCSLEQCIAGLNSQRPENLLAPSADTTCHEVDAVDSVPFLNHMKRLYFHSRQTHVAPTPLVLEYVMTALGNVTTADSRVFHLANRLLLDADKYVILPTRTTYAAFFTICSLHNAMPFALSRFKDAVVNLHVAVDATMASAILEGLVQNGLVEEAVLLLARLQHVPMDVQLLNTALEVLLLSKQPQSCFSAFEAVRHSGVEPTADTYTLLLLACERSGLWGNTTAILADMQMRRVKGDGRTLNLLLKGLLTERLHGYSRQLYETMVNKNVEVWPALESHMKSRTAGGEQLKRGSTIKTSKSSQPS
SIO_010081: TB927.1.1160
subclass of: SO_0000673
so part of: TB927.1.1160
location: 319653..321248
location: region:319653-321248:1
so has part: feature:319653-321248:1:exon

XP_001218819.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA2
type: GOA
SIO_000068: goa

Q4GZA2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:319653-321248:1:exon

TB927.1.1160
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1160
old locus tag: Tb927.1.1160
note: Signal peptide predicted for Tb927.1.1160 by SignalP 2.0 HMM (Signal peptide probabilty 0.874, signal anchor probability 0.006) with cleavage site probability 0.263 between residues 32 and 33
SIO_010081: TB927.1.1160
subclass of: SO_0000673
so part of: TB927.1.1160
location: 319653..319746
location: region:319653-319746:1
so has part: feature:319653-319746:1:exon

position:319746:1
position: 319746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319653-319746:1:exon

TB927.1.1170
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1170
old locus tag: Tb927.1.1170
so part of: sequence
location: <321388..>321873
location: region:321388-321873:1
so has part: feature:321388-321873:1:exon
subclass of: SO_0000010

4357193
type: Gene
SIO_000068: ncbigene

position:321388:1
position: 321388
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:321873:1
position: 321873
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321388-321873:1:exon

TB927.1.1170
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1170
old locus tag: Tb927.1.1170
product: hypothetical protein, conserved
transcript id: XM_001218819.1
SIO_010081: TB927.1.1170
subclass of: SO_0000673
so part of: TB927.1.1170
location: <321388..>321873
location: region:321388-321873:1
so has part: feature:321388-321873:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321388-321873:1:exon

TB927.1.1170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1170
old locus tag: Tb927.1.1170
codon start: 1
product: hypothetical protein, conserved
translation: MRQLIPLKYCCVADSIYRVCFVSLCFSPSPNFHCSPLFPPFFLLLATKYRVRVCSRHGFHFWVVFNRRRTSIFDPQARSMLSYTVKEEVKDEKLPGANNFADVGGSLEDEEPMTLYTCANCTRVVALCPSSQLMCTHCVHRTGSSTVFYKVRQQPTTYDTI
SIO_010081: TB927.1.1170
subclass of: SO_0000673
so part of: TB927.1.1170
location: 321388..321873
location: region:321388-321873:1
so has part: feature:321388-321873:1:exon

XP_001218820.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA1
type: GOA
SIO_000068: goa

Q4GZA1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:321388-321873:1:exon

TB927.1.1180
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1180
old locus tag: Tb927.1.1180
so part of: sequence
location: <322693..>323139
location: region:322693-323139:1
so has part: feature:322693-323139:1:exon
subclass of: SO_0000010

4357194
type: Gene
SIO_000068: ncbigene

position:322693:1
position: 322693
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:323139:1
position: 323139
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322693-323139:1:exon

TB927.1.1180
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1180
old locus tag: Tb927.1.1180
product: hypothetical protein, unlikely
transcript id: XM_001218820.1
SIO_010081: TB927.1.1180
subclass of: SO_0000673
so part of: TB927.1.1180
location: <322693..>323139
location: region:322693-323139:1
so has part: feature:322693-323139:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:322693-323139:1:exon

TB927.1.1180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1180
old locus tag: Tb927.1.1180
codon start: 1
product: hypothetical protein, unlikely
translation: MRGAHIFNSFTLCPWWLIVPNSFSCIPYLERSAARLYVIWAHSCLFLCYRVKSEIDCKALQPVKRQNGVCYRFLLLTTKTYFSFLKFSSINRKSVGCGPLGCASVNLFIVQRRRSLHAQTSACLGGGGGRLRDFCVLPLRKHKRPNKV
SIO_010081: TB927.1.1180
subclass of: SO_0000673
so part of: TB927.1.1180
location: 322693..323139
location: region:322693-323139:1
so has part: feature:322693-323139:1:exon

XP_001218821.1
type: Protein
SIO_000068: ncbiprotein

Q4GZA0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:322693-323139:1:exon

TB927.1.1180
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1180
old locus tag: Tb927.1.1180
note: Signal peptide predicted for Tb927.1.1180 by SignalP 2.0 HMM (Signal peptide probabilty 0.619, signal anchor probability 0.236) with cleavage site probability 0.464 between residues 24 and 25
SIO_010081: TB927.1.1180
subclass of: SO_0000673
so part of: TB927.1.1180
location: 322693..322762
location: region:322693-322762:1
so has part: feature:322693-322762:1:exon

position:322762:1
position: 322762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322693-322762:1:exon

TB927.1.1200
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1200
old locus tag: Tb927.1.1200
so part of: sequence
location: <323197..>324486
location: region:323197-324486:1
so has part: feature:323197-324486:1:exon
subclass of: SO_0000010

4357195
type: Gene
SIO_000068: ncbigene

position:323197:1
position: 323197
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:324486:1
position: 324486
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323197-324486:1:exon

TB927.1.1200
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1200
old locus tag: Tb927.1.1200
product: hypothetical protein, conserved
transcript id: XM_001218821.1
SIO_010081: TB927.1.1200
subclass of: SO_0000673
so part of: TB927.1.1200
location: <323197..>324486
location: region:323197-324486:1
so has part: feature:323197-324486:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:323197-324486:1:exon

TB927.1.1200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1200
old locus tag: Tb927.1.1200
codon start: 1
product: hypothetical protein, conserved
translation: MFVRSFCFLRKYGSKSKTPDLKTSFTKTTNFRKAEKISITTTDGEIVKGRGKIRRRTHSALKEAIGAMEHPAIWLWYPWRMNPEPPTPHMPQRRALKNVHGAVFNDLTPVQKKRQEQMLYGVNIPETRQMKFEEQHPLLAGALRKLEGQPKGFPFWYRKYPTRRHAYEYRFSIPVEMLDGYNDDVKKALSKGMMSIQEKQFAQEAMYMERYAEHDFDTTSPAVLAVKRALKCRVLRNHLLTNPHNNIIKTVLANTERKLNHALRRLRKVDFKKYWEIIRDHDVQDILQPPNLVTYRQGSYWKYDWNAGLAISTNLADVMDPRGLNGCVETGRSRSEVARDLGLSYTRPLHENEKKQLSHQAVYYERLAKFKMEQPEAARAMERERFVRKFSGMFVKMDIRSGAPDFPSTYRRLLGTKVVRWASKRHGPN
SIO_010081: TB927.1.1200
subclass of: SO_0000673
so part of: TB927.1.1200
location: 323197..324486
location: region:323197-324486:1
so has part: feature:323197-324486:1:exon

XP_001218822.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ99
type: GOA
SIO_000068: goa

IPR009068
type: InterPro
SIO_000068: interpro

Q4GZ99
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:323197-324486:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call 10 T, Two WCS reads call 11 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 324679..324688
location: region:324679-324688:1
so has part: feature:324679-324688:1:region

position:324679:1
position: 324679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324688:1
position: 324688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324679-324688:1:region

TB927.1.1210
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1210
old locus tag: Tb927.1.1210
so part of: sequence
location: <325554..>325988
location: region:325554-325988:1
so has part: feature:325554-325988:1:exon
subclass of: SO_0000010

4357196
type: Gene
SIO_000068: ncbigene

position:325554:1
position: 325554
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:325988:1
position: 325988
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:325554-325988:1:exon

TB927.1.1210
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1210
old locus tag: Tb927.1.1210
product: hypothetical protein, conserved
transcript id: XM_001218822.1
SIO_010081: TB927.1.1210
subclass of: SO_0000673
so part of: TB927.1.1210
location: <325554..>325988
location: region:325554-325988:1
so has part: feature:325554-325988:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:325554-325988:1:exon

TB927.1.1210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1210
old locus tag: Tb927.1.1210
codon start: 1
product: hypothetical protein, conserved
translation: MGYTRERTNRHFFVARANAFFSRLPIARVQRSLAMEAVREGRMRPWKYTKEQILGAPVTCNFEYNPRPVRLIGTVMDAHTEETSIKGGLKVYARNEETNMMLWIPPGNPKLRHEVTSTKGSFQHYLDERDKWDEAWITGRARMK
SIO_010081: TB927.1.1210
subclass of: SO_0000673
so part of: TB927.1.1210
location: 325554..325988
location: region:325554-325988:1
so has part: feature:325554-325988:1:exon

XP_001218823.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ98
type: GOA
SIO_000068: goa

Q4GZ98
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:325554-325988:1:exon

TB927.1.1220
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1220
old locus tag: Tb927.1.1220
so part of: sequence
location: <326712..>327395
location: region:326712-327395:1
so has part: feature:326712-327395:1:exon
subclass of: SO_0000010

4357197
type: Gene
SIO_000068: ncbigene

position:326712:1
position: 326712
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:327395:1
position: 327395
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326712-327395:1:exon

TB927.1.1220
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1220
old locus tag: Tb927.1.1220
product: hypothetical protein, conserved
transcript id: XM_001218823.1
SIO_010081: TB927.1.1220
subclass of: SO_0000673
so part of: TB927.1.1220
location: <326712..>327395
location: region:326712-327395:1
so has part: feature:326712-327395:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:326712-327395:1:exon

TB927.1.1220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1220
old locus tag: Tb927.1.1220
codon start: 1
product: hypothetical protein, conserved
translation: MPATEMQQMEMDMVQGMYDSFTLCSEDPPTYSVVLSATEDEPPELRVTVVYESDDYPETMAPTVRLEHFAKNRRMPTAPLLKEIMELCEEQIGMHSIISVLQKAQEYLTEFAEGDEKAELQKRGEALGNAAGTAVVQDPTIRIGNAVTRELFEEWSQKRRAERLREREANEKKVSGKLTGRQLWDAALRNTEWDLFCGSDTEQDVDLDAFEPVDEDDLDEQEFDLDE
SIO_010081: TB927.1.1220
subclass of: SO_0000673
so part of: TB927.1.1220
location: 326712..327395
location: region:326712-327395:1
so has part: feature:326712-327395:1:exon

XP_001218824.1
type: Protein
SIO_000068: ncbiprotein

IPR006575
type: InterPro
SIO_000068: interpro

IPR016135
type: InterPro
SIO_000068: interpro

Q4GZ97
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:326712-327395:1:exon

TB927.1.1230
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1230
old locus tag: Tb927.1.1230
so part of: sequence
location: <327663..>329105
location: region:327663-329105:1
so has part: feature:327663-329105:1:exon
subclass of: SO_0000010

4357198
type: Gene
SIO_000068: ncbigene

position:327663:1
position: 327663
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:329105:1
position: 329105
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327663-329105:1:exon

TB927.1.1230
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1230
old locus tag: Tb927.1.1230
product: chaperone protein DNAJ, putative
transcript id: XM_001218824.1
SIO_010081: TB927.1.1230
subclass of: SO_0000673
so part of: TB927.1.1230
location: <327663..>329105
location: region:327663-329105:1
so has part: feature:327663-329105:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:327663-329105:1:exon

TB927.1.1230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1230
old locus tag: Tb927.1.1230
codon start: 1
product: chaperone protein DNAJ, putative
translation: MRGITLALAPPSLLFVPKIQRRCFNVIQRGNDREVDSLFALLGFAGDNEAHRIRRTRAELRQGFMREAMKLKDPQNDKSDAAKLEKLREAYQLLSNDRFRVQYAAHHYASPDASLHLLVDGGQVAANFNPEHQSFNFVDHAISRAAMSPSSRSSSDKQRSFSDFTGQYNSVIGNTGCSTDARPYNAPEARAAINGAGINFMLRISFDESVLGCTKTAVYEKNVSCQRCSGNGRMVLKRPRKCPQCRGRGSTHLPSATYHIERSCTYCNGDGVTPPPKCSGCRGAGVVPGHTVQVPVDIRPGTTNMTACRLRGMGHDGVRGGVAGDLIVTVLVQEHRVFHRDGLDLHMVLPITLSTALLGGMVSVPLLHGPFCTRVPPCVRNGQQIRLSGRGVTLDGSGVLTNAEEGIDTDSSASKQEQQQRGDLYIHLLVVIPKGEELTGAQRSALEQFVVEQDGNGAEGVDDITPTALKRRFRHWLPGT
SIO_010081: TB927.1.1230
subclass of: SO_0000673
so part of: TB927.1.1230
location: 327663..329105
location: region:327663-329105:1
so has part: feature:327663-329105:1:exon

XP_001218825.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ96
type: GOA
SIO_000068: goa

IPR001305
type: InterPro
SIO_000068: interpro

IPR001623
type: InterPro
SIO_000068: interpro

IPR002939
type: InterPro
SIO_000068: interpro

IPR008971
type: InterPro
SIO_000068: interpro

Q4GZ96
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:327663-329105:1:exon

TB927.1.1230
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1230
old locus tag: Tb927.1.1230
note: Signal peptide predicted for Tb927.1.1230 by SignalP 2.0 HMM (Signal peptide probabilty 0.673, signal anchor probability 0.001) with cleavage site probability 0.489 between residues 21 and 22
SIO_010081: TB927.1.1230
subclass of: SO_0000673
so part of: TB927.1.1230
location: 327663..327723
location: region:327663-327723:1
so has part: feature:327663-327723:1:exon

position:327723:1
position: 327723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327663-327723:1:exon

TB927.1.1230
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1230
old locus tag: Tb927.1.1230
note: Majority of WCS and TP1J10 call G, One WCS read calls A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1230
subclass of: SO_0000673
so part of: TB927.1.1230
location: 328913
location: region:328913-328913:1
so has part: feature:328913-328913:1:exon

position:328913:1
position: 328913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:328913-328913:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call G, One WCS read and TP27E7 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 329756
location: region:329756-329756:1
so has part: feature:329756-329756:1:region

position:329756:1
position: 329756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329756-329756:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS call T, Two WCS reads and TP27E7 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 329964
location: region:329964-329964:1
so has part: feature:329964-329964:1:region

position:329964:1
position: 329964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329964-329964:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS call T, Two WCS reads and TP27E7 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 329965
location: region:329965-329965:1
so has part: feature:329965-329965:1:region

position:329965:1
position: 329965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329965-329965:1:region

TB927.1.1240
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1240
old locus tag: Tb927.1.1240
so part of: sequence
location: <330289..>332058
location: region:330289-332058:1
so has part: feature:330289-332058:1:exon
subclass of: SO_0000010

4357199
type: Gene
SIO_000068: ncbigene

position:330289:1
position: 330289
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:332058:1
position: 332058
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330289-332058:1:exon

TB927.1.1240
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1240
old locus tag: Tb927.1.1240
product: cytidine triphosphate synthase, putative
transcript id: XM_001218825.1
SIO_010081: TB927.1.1240
subclass of: SO_0000673
so part of: TB927.1.1240
location: <330289..>332058
location: region:330289-332058:1
so has part: feature:330289-332058:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:330289-332058:1:exon

TB927.1.1240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1240
old locus tag: Tb927.1.1240
EC number: 6.3.4.2
codon start: 1
product: cytidine triphosphate synthase, putative
translation: MEGSATAKAYMLPSPELRPVSGTGACKYIVVTGGVCSSLGKGVTTSATGALLRAEGYQVCSIKIDPYINMDAGLMSPYEHGEVYVLDDGGEVDLDLGNYERWMSVQLRREHNITTGKVYQKLINKERQGGFLGKTVQLVPHFTNDVVESIFRVSQSPVDESGAQPEICMIELGGTVGDMESQPFVEALRRLRCLVGPDEFCLMHTTYLPVFGGSQKTKPTQHSTRTLLSMGLQPDILICRSENRLTPDAKEKLSNLCGVRSGDIVSAPNVSCLYEVPVVFTKDGLVDRLVEKLRLVKRTPATDVPRIDTYKTYVKILRNMSNPTVRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVCLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVHIVEKSSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYVWPQKCSQRRLKQA
SIO_010081: TB927.1.1240
subclass of: SO_0000673
so part of: TB927.1.1240
location: 330289..332058
location: region:330289-332058:1
so has part: feature:330289-332058:1:exon

XP_001218826.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ95
type: GOA
SIO_000068: goa

IPR004468
type: InterPro
SIO_000068: interpro

IPR017456
type: InterPro
SIO_000068: interpro

IPR017926
type: InterPro
SIO_000068: interpro

IPR029062
type: InterPro
SIO_000068: interpro

2W7T
type: PDB
SIO_000068: pdb

Q4GZ95
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:330289-332058:1:exon

TB927.1.1250
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1250
old locus tag: Tb927.1.1250
so part of: sequence
location: <332202..>332513
location: region:332202-332513:1
so has part: feature:332202-332513:1:exon
subclass of: SO_0000010

4357200
type: Gene
SIO_000068: ncbigene

position:332202:1
position: 332202
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:332513:1
position: 332513
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332202-332513:1:exon

TB927.1.1250
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1250
old locus tag: Tb927.1.1250
product: hypothetical protein, unlikely
transcript id: XM_001218826.1
SIO_010081: TB927.1.1250
subclass of: SO_0000673
so part of: TB927.1.1250
location: <332202..>332513
location: region:332202-332513:1
so has part: feature:332202-332513:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:332202-332513:1:exon

TB927.1.1250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1250
old locus tag: Tb927.1.1250
note: GPI-Anchor Signal predicted for Tb927.1.1250 by DGPI v2.04 with cleavage site probability 0.25800002 near 83
codon start: 1
product: hypothetical protein, unlikely
translation: MKTSLVYICVCMCVCVTSDTLRIHARNEVSGGEQINRDGHDFLLNVNINRLIQFVRPMKKEKKKEKKRKKKKEKRKKHFRCHSRAIGLVEVVEELRYGMCCSL
SIO_010081: TB927.1.1250
subclass of: SO_0000673
so part of: TB927.1.1250
location: 332202..332513
location: region:332202-332513:1
so has part: feature:332202-332513:1:exon

XP_001218827.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ94
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:332202-332513:1:exon

TB927.1.1250
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1250
old locus tag: Tb927.1.1250
note: Signal peptide predicted for Tb927.1.1250 by SignalP 2.0 HMM (Signal peptide probabilty 0.973, signal anchor probability 0.002) with cleavage site probability 0.467 between residues 18 and 19
SIO_010081: TB927.1.1250
subclass of: SO_0000673
so part of: TB927.1.1250
location: 332202..332253
location: region:332202-332253:1
so has part: feature:332202-332253:1:exon

position:332253:1
position: 332253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332202-332253:1:exon

TB927.1.1250
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1250
old locus tag: Tb927.1.1250
note: GPI-Anchor Signal predicted for Tb927.1.1250 by DGPI v2.04 with cleavage site probability 0.25800002 near 83
SIO_010081: TB927.1.1250
subclass of: SO_0000673
so part of: TB927.1.1250
location: 332448..332453
location: region:332448-332453:1
so has part: feature:332448-332453:1:exon

position:332448:1
position: 332448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332453:1
position: 332453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332448-332453:1:exon

TB927.1.1260
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1260
old locus tag: Tb927.1.1260
so part of: sequence
location: complement(<333686..>334180)
location: region:333686-334180:-1
so has part: feature:333686-334180:-1:exon
subclass of: SO_0000010

4357201
type: Gene
SIO_000068: ncbigene

position:333686:-1
position: 333686
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:334180:-1
position: 334180
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:333686-334180:-1:exon

TB927.1.1260
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1260
old locus tag: Tb927.1.1260
product: hypothetical protein, unlikely
transcript id: XM_001218827.1
SIO_010081: TB927.1.1260
subclass of: SO_0000673
so part of: TB927.1.1260
location: complement(<333686..>334180)
location: region:333686-334180:-1
so has part: feature:333686-334180:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:333686-334180:-1:exon

TB927.1.1260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1260
old locus tag: Tb927.1.1260
note: unlikely gene, opposite strand to gene cluster
codon start: 1
product: hypothetical protein, unlikely
translation: MVSLRCFAFFDKCYGMYRISSFFENKKKFYSSLMDFIFIFYFFFVALSTINTIPHPPLSLTPKIIKKRKKKRKKGGTYARVCCGKRDEEWRGKGGKEGKIIKKGKKKKRKTEEKNRQKAADRNVTSLHIHSPLFLLLFFFFLSFNNIYFLLKRSFPSAHPHLGH
SIO_010081: TB927.1.1260
subclass of: SO_0000673
so part of: TB927.1.1260
location: complement(333686..334180)
location: region:333686-334180:-1
so has part: feature:333686-334180:-1:exon

XP_001218828.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ93
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:333686-334180:-1:exon

TB927.1.1260
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1260
old locus tag: Tb927.1.1260
note: 2 probable transmembrane helices predicted for Tb927.1.1260 by TMHMM2.0 at aa 37-59 and 129-151
SIO_010081: TB927.1.1260
subclass of: SO_0000673
so part of: TB927.1.1260
location: complement(join(333728..333796,334004..334072))
location: region:333728-334072:-1
so has part: feature:334004-334072:-1:exon
so has part: feature:333728-333796:-1:exon

position:333728:-1
position: 333728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:334072:-1
position: 334072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334004-334072:-1:exon

position:334004:-1
position: 334004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:333728-333796:-1:exon

position:333796:-1
position: 333796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.1260
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1260
old locus tag: Tb927.1.1260
note: Signal anchor predicted for Tb927.1.1260 by SignalP 2.0 HMM (Signal peptide probabilty 0.001, signal anchor probability 0.967) with cleavage site probability 0.001 between residues 52 and 53
SIO_010081: TB927.1.1260
subclass of: SO_0000673
so part of: TB927.1.1260
location: complement(334021..334180)
location: region:334021-334180:-1
so has part: feature:334021-334180:-1:exon

position:334021:-1
position: 334021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334021-334180:-1:exon

TB927.1.1270
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1270
old locus tag: Tb927.1.1270
so part of: sequence
location: <334687..>335988
location: region:334687-335988:1
so has part: feature:334687-335988:1:exon
subclass of: SO_0000010

4357202
type: Gene
SIO_000068: ncbigene

position:334687:1
position: 334687
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:335988:1
position: 335988
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:334687-335988:1:exon

TB927.1.1270
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1270
old locus tag: Tb927.1.1270
product: homocysteine S-methyltransferase, putative
transcript id: XM_001218828.1
SIO_010081: TB927.1.1270
subclass of: SO_0000673
so part of: TB927.1.1270
location: <334687..>335988
location: region:334687-335988:1
so has part: feature:334687-335988:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:334687-335988:1:exon

TB927.1.1270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1270
old locus tag: Tb927.1.1270
EC number: 2.1.1.10
codon start: 1
product: homocysteine S-methyltransferase, putative
translation: MKDISCPTGETGSIFEKSKKFQHFFTMDGAVGTLVERCGLDPSKMGSMWSTSALITDEEIVRYVHKSYLDVGADVILTNTYQMHAAGCAQAGVTMNEVVNTAVRVLCDGITPERAAATKEAKVWAQHVMNNKRSEFVNVFAPLFYGPRDDASKCPVLVGGSLGSYGASLGNAQEYRGEYEVNEDIIRDYYVGRFMAFVNHVDEKEAHLKVDFIMIETIPLLNEAIEIFTWLKYQKEDETLRSAPVCLSFISCLREPRPDVTVDDATLNEWWLAAESNIRLIDGNTFEKAFNSLMELQLPQLVGFGTNCCSPLEASVVASAFLKKKKHKVTDPSLALFLYSNSGENFKEGEWHWGGQLPRGSHSPTSSPKETLPFTTLQRLMLCCEADVRTAAFFAYQLLLQRPEADDWLFDIIICGGCCRSTPEDIAMIRSLV
SIO_010081: TB927.1.1270
subclass of: SO_0000673
so part of: TB927.1.1270
location: 334687..335988
location: region:334687-335988:1
so has part: feature:334687-335988:1:exon

XP_001218829.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ92
type: GOA
SIO_000068: goa

IPR003726
type: InterPro
SIO_000068: interpro

Q4GZ92
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:334687-335988:1:exon

TB927.1.1280
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1280
old locus tag: Tb927.1.1280
so part of: sequence
location: <336062..>336493
location: region:336062-336493:1
so has part: feature:336062-336493:1:exon
subclass of: SO_0000010

4357203
type: Gene
SIO_000068: ncbigene

position:336062:1
position: 336062
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:336493:1
position: 336493
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336062-336493:1:exon

TB927.1.1280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1280
old locus tag: Tb927.1.1280
product: hypothetical protein, unlikely
transcript id: XM_001218829.1
SIO_010081: TB927.1.1280
subclass of: SO_0000673
so part of: TB927.1.1280
location: <336062..>336493
location: region:336062-336493:1
so has part: feature:336062-336493:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:336062-336493:1:exon

TB927.1.1280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1280
old locus tag: Tb927.1.1280
codon start: 1
product: hypothetical protein, unlikely
translation: MELRFFFLFFPFQILFFLYCSFFFFVSFLIFLFFFWGGAMIFMTSDRAPIHFPSFFFFLFSFFPFFSIPFLSSTKKEESENVVSELTKIQKKKQQRKKNKRKRGYNNRSNQTNKQRNKHINTRIQARIETTKRNDVEVKAATF
SIO_010081: TB927.1.1280
subclass of: SO_0000673
so part of: TB927.1.1280
location: 336062..336493
location: region:336062-336493:1
so has part: feature:336062-336493:1:exon

XP_001218830.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ91
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:336062-336493:1:exon

TB927.1.1280
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1280
old locus tag: Tb927.1.1280
note: Signal anchor predicted for Tb927.1.1280 by SignalP 2.0 HMM (Signal peptide probabilty 0.001, signal anchor probability 0.999) with cleavage site probability 0.000 between residues 47 and 48
SIO_010081: TB927.1.1280
subclass of: SO_0000673
so part of: TB927.1.1280
location: 336062..336200
location: region:336062-336200:1
so has part: feature:336062-336200:1:exon

position:336200:1
position: 336200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336062-336200:1:exon

TB927.1.1280
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1280
old locus tag: Tb927.1.1280
note: 2 probable transmembrane helices predicted for Tb927.1.1280 by TMHMM2.0 at aa 15-37 and 50-72
SIO_010081: TB927.1.1280
subclass of: SO_0000673
so part of: TB927.1.1280
location: join(336104..336172,336209..336277)
location: region:336104-336277:1
so has part: feature:336104-336172:1:exon
so has part: feature:336209-336277:1:exon

position:336104:1
position: 336104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336277:1
position: 336277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336104-336172:1:exon

position:336172:1
position: 336172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:336209-336277:1:exon

position:336209:1
position: 336209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TB927.1.1290
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1290
old locus tag: Tb927.1.1290
so part of: sequence
location: <337453..>337776
location: region:337453-337776:1
so has part: feature:337453-337776:1:exon
subclass of: SO_0000010

4357204
type: Gene
SIO_000068: ncbigene

position:337453:1
position: 337453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:337776:1
position: 337776
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337453-337776:1:exon

TB927.1.1290
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1290
old locus tag: Tb927.1.1290
product: hypothetical protein, unlikely
transcript id: XM_001218830.1
SIO_010081: TB927.1.1290
subclass of: SO_0000673
so part of: TB927.1.1290
location: <337453..>337776
location: region:337453-337776:1
so has part: feature:337453-337776:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:337453-337776:1:exon

TB927.1.1290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1290
old locus tag: Tb927.1.1290
codon start: 1
product: hypothetical protein, unlikely
translation: MKMLATLGGVKKKKKKKKKEKKKRGFVGIFISKAIKRRTQMSLCGNIGESTAVVLMICFNFFSPFTFGFSINNSSLFYTLFPLSLSFFLLSFYVLQVSDDTYESCLH
SIO_010081: TB927.1.1290
subclass of: SO_0000673
so part of: TB927.1.1290
location: 337453..337776
location: region:337453-337776:1
so has part: feature:337453-337776:1:exon

XP_001218831.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ90
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:337453-337776:1:exon

TB927.1.1290
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1290
old locus tag: Tb927.1.1290
note: 2 probable transmembrane helices predicted for Tb927.1.1290 by TMHMM2.0 at aa 43-65 and 75-97
SIO_010081: TB927.1.1290
subclass of: SO_0000673
so part of: TB927.1.1290
location: join(337579..337647,337675..337743)
location: region:337579-337743:1
so has part: feature:337579-337647:1:exon
so has part: feature:337675-337743:1:exon

position:337579:1
position: 337579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337743:1
position: 337743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337579-337647:1:exon

position:337647:1
position: 337647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:337675-337743:1:exon

position:337675:1
position: 337675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TB927.1.1300
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1300
old locus tag: Tb927.1.1300
so part of: sequence
location: <338098..>339021
location: region:338098-339021:1
so has part: feature:338098-339021:1:exon
subclass of: SO_0000010

4357205
type: Gene
SIO_000068: ncbigene

position:338098:1
position: 338098
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:339021:1
position: 339021
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338098-339021:1:exon

TB927.1.1300
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1300
old locus tag: Tb927.1.1300
product: hypothetical protein, conserved
transcript id: XM_001218831.1
SIO_010081: TB927.1.1300
subclass of: SO_0000673
so part of: TB927.1.1300
location: <338098..>339021
location: region:338098-339021:1
so has part: feature:338098-339021:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:338098-339021:1:exon

TB927.1.1300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1300
old locus tag: Tb927.1.1300
codon start: 1
product: hypothetical protein, conserved
translation: MTEIVSDNYFPPNDKLGETPSVPNEATPPLESPSSTTENATSLKREENTSALHSNSLLDTSSSICAFEFNFVIEQDETVRGAIETINALMQAGDINGAVAVAEASQLTIDMLALNGTQLATAMNMTLKYAVRPICGAFLFLFDTAFGVWAMVPSLEGILRKTAHKVENNNTTATSYVATREKPFLWGITGGMDVTNRVYAEVTMLVVCVILCLLIFSIRRLFRHYSASIDTLEAWKQKSWHVQANGAYSPAPLLPLAVNHTHVETLAWEDGLQFANKSKSLHNISPTSSGANLVEDNMSPISLSRTM
SIO_010081: TB927.1.1300
subclass of: SO_0000673
so part of: TB927.1.1300
location: 338098..339021
location: region:338098-339021:1
so has part: feature:338098-339021:1:exon

XP_001218832.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ89
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:338098-339021:1:exon

TB927.1.1300
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1300
old locus tag: Tb927.1.1300
note: 2 probable transmembrane helices predicted for Tb927.1.1300 by TMHMM2.0 at aa 130-152 and 199-218
SIO_010081: TB927.1.1300
subclass of: SO_0000673
so part of: TB927.1.1300
location: join(338485..338553,338692..338751)
location: region:338485-338751:1
so has part: feature:338485-338553:1:exon
so has part: feature:338692-338751:1:exon

position:338485:1
position: 338485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:338751:1
position: 338751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338485-338553:1:exon

position:338553:1
position: 338553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:338692-338751:1:exon

position:338692:1
position: 338692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TB927.1.1310
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1310
old locus tag: Tb927.1.1310
so part of: sequence
location: <339557..>340849
location: region:339557-340849:1
so has part: feature:339557-340849:1:exon
subclass of: SO_0000010

4357206
type: Gene
SIO_000068: ncbigene

position:339557:1
position: 339557
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:340849:1
position: 340849
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339557-340849:1:exon

TB927.1.1310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1310
old locus tag: Tb927.1.1310
product: hypothetical protein, conserved
transcript id: XM_001218832.1
SIO_010081: TB927.1.1310
subclass of: SO_0000673
so part of: TB927.1.1310
location: <339557..>340849
location: region:339557-340849:1
so has part: feature:339557-340849:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:339557-340849:1:exon

TB927.1.1310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1310
old locus tag: Tb927.1.1310
codon start: 1
product: hypothetical protein, conserved
translation: MSLLVALVRVIGFVLFFTALLRVKKTRVRHLPSRRTRVSRHQGETCIWLERLTSAVFDIFYSAMREGNEPDTREQRGQSQNNSCEGDFAANSARREDKSCGGGGGVGGDAWRFVRLIEEHVEALLEDRGIAACATFNIHSLGDKPPIIRAIRVINRTGMESVPPGSAAPATGSGSPGSGDKDTATPSTVVVPPALNANTSTSINATGVKPVVSHKTKLRPSQLTLYPTGDGTEKWHNEMHPDEAVAAAPSAANPILSCLPPLPATAIELEAEVEYAGDIDVRLQADICLARGRRLPVFIRVSDVEYIKAHVRLHATLKHENATMDTQRKPYLQCTLWLESEPTFSFKMSTVFSFHGIRDFFAVPVVAKFLFLRLVNYRMLYPRGAGLSFNIPLPEDVVDGGVYPWFSPMDDVGTVATPSLNSFMMGRGAL
SIO_010081: TB927.1.1310
subclass of: SO_0000673
so part of: TB927.1.1310
location: 339557..340849
location: region:339557-340849:1
so has part: feature:339557-340849:1:exon

XP_001218833.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ88
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:339557-340849:1:exon

TB927.1.1310
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1310
old locus tag: Tb927.1.1310
note: Signal peptide predicted for Tb927.1.1310 by SignalP 2.0 HMM (Signal peptide probabilty 0.832, signal anchor probability 0.149) with cleavage site probability 0.215 between residues 22 and 23
SIO_010081: TB927.1.1310
subclass of: SO_0000673
so part of: TB927.1.1310
location: 339557..339620
location: region:339557-339620:1
so has part: feature:339557-339620:1:exon

position:339620:1
position: 339620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339557-339620:1:exon

TB927.1.1310
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1310
old locus tag: Tb927.1.1310
note: 1 probable transmembrane helix predicted for Tb927.1.1310 by TMHMM2.0 at aa 2-21
SIO_010081: TB927.1.1310
subclass of: SO_0000673
so part of: TB927.1.1310
location: 339560..339619
location: region:339560-339619:1
so has part: feature:339560-339619:1:exon

position:339560:1
position: 339560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339619:1
position: 339619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:339560-339619:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of TA in 1 WCS read; type 5
so part of: sequence
location: 340873..340874
location: region:340873-340874:1
so has part: feature:340873-340874:1:region

position:340873:1
position: 340873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340874:1
position: 340874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340873-340874:1:region

TB927.1.1320
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
so part of: sequence
location: <340881..>341111
location: region:340881-341111:1
so has part: feature:340881-341111:1:exon
subclass of: SO_0000010

4357207
type: Gene
SIO_000068: ncbigene

position:340881:1
position: 340881
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:341111:1
position: 341111
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340881-341111:1:exon

TB927.1.1320
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
product: hypothetical protein, unlikely
transcript id: XM_001218833.1
SIO_010081: TB927.1.1320
subclass of: SO_0000673
so part of: TB927.1.1320
location: <340881..>341111
location: region:340881-341111:1
so has part: feature:340881-341111:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340881-341111:1:exon

TB927.1.1320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MCVCVCVFYIFSLCLGLYDGGAGVILNWRSEICLSFKVVFTGERNEEIQSRGEGKCGDIYVECVCLCAASLCICPQ
SIO_010081: TB927.1.1320
subclass of: SO_0000673
so part of: TB927.1.1320
location: 340881..341111
location: region:340881-341111:1
so has part: feature:340881-341111:1:exon

XP_001218834.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ87
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:340881-341111:1:exon

TB927.1.1320
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
note: Signal peptide predicted for Tb927.1.1320 by SignalP 2.0 HMM (Signal peptide probabilty 0.969, signal anchor probability 0.010) with cleavage site probability 0.670 between residues 16 and 17
SIO_010081: TB927.1.1320
subclass of: SO_0000673
so part of: TB927.1.1320
location: 340881..340926
location: region:340881-340926:1
so has part: feature:340881-340926:1:exon

position:340926:1
position: 340926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340881-340926:1:exon

TB927.1.1320
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
note: Majority of WCS, TP29E6 and TP1J10 call G, One WCS read calls A; type 1 (single nucleotide substitutions); mis-sense mutation at 1 in Tb927.1.1320 M -> I
SIO_010081: TB927.1.1320
subclass of: SO_0000673
so part of: TB927.1.1320
location: 340883
location: region:340883-340883:1
so has part: feature:340883-340883:1:exon

position:340883:1
position: 340883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340883-340883:1:exon

TB927.1.1320
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
note: 1 probable transmembrane helix predicted for Tb927.1.1320 by TMHMM2.0 at aa 5-27
SIO_010081: TB927.1.1320
subclass of: SO_0000673
so part of: TB927.1.1320
location: 340893..340961
location: region:340893-340961:1
so has part: feature:340893-340961:1:exon

position:340893:1
position: 340893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340961:1
position: 340961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340893-340961:1:exon

TB927.1.1320
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1320
old locus tag: Tb927.1.1320
note: GPI-Anchor Signal predicted for Tb927.1.1320 by DGPI v2.04 with cleavage site probability 0.1462 near 50
SIO_010081: TB927.1.1320
subclass of: SO_0000673
so part of: TB927.1.1320
location: 341028..341033
location: region:341028-341033:1
so has part: feature:341028-341033:1:exon

position:341028:1
position: 341028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341033:1
position: 341033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341028-341033:1:exon

TB927.1.1330
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1330
old locus tag: Tb927.1.1330
so part of: sequence
location: <341299..>342519
location: region:341299-342519:1
so has part: feature:341299-342519:1:exon
subclass of: SO_0000010

4357208
type: Gene
SIO_000068: ncbigene

position:341299:1
position: 341299
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:342519:1
position: 342519
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341299-342519:1:exon

TB927.1.1330
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1330
old locus tag: Tb927.1.1330
product: hypothetical protein, conserved
transcript id: XM_001218834.1
SIO_010081: TB927.1.1330
subclass of: SO_0000673
so part of: TB927.1.1330
location: <341299..>342519
location: region:341299-342519:1
so has part: feature:341299-342519:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:341299-342519:1:exon

TB927.1.1330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1330
old locus tag: Tb927.1.1330
codon start: 1
product: hypothetical protein, conserved
translation: MNVAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFRESDTVPRFQGFEGVGTRDHRVKTFRPQ
SIO_010081: TB927.1.1330
subclass of: SO_0000673
so part of: TB927.1.1330
location: 341299..342519
location: region:341299-342519:1
so has part: feature:341299-342519:1:exon

XP_001218835.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ86
type: GOA
SIO_000068: goa

3HIY
type: PDB
SIO_000068: pdb

3HJ1
type: PDB
SIO_000068: pdb

3HJ4
type: PDB
SIO_000068: pdb

Q4GZ86
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:341299-342519:1:exon

TB927.1.1330
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1330
old locus tag: Tb927.1.1330
note: Majority of WCS and TP1J10 call C, One WCS read and TP27E7 call T; type 1 (single nucleotide substitutions); mis-sense mutation at 165 in Tb927.1.1330 A -> V
SIO_010081: TB927.1.1330
subclass of: SO_0000673
so part of: TB927.1.1330
location: 341792
location: region:341792-341792:1
so has part: feature:341792-341792:1:exon

position:341792:1
position: 341792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341792-341792:1:exon

TB927.1.1340
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
so part of: sequence
location: <342978..>345206
location: region:342978-345206:1
so has part: feature:342978-345206:1:exon
subclass of: SO_0000010

4357209
type: Gene
SIO_000068: ncbigene

position:342978:1
position: 342978
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:345206:1
position: 345206
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342978-345206:1:exon

TB927.1.1340
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
product: FG-GAP repeat protein; intergrin alpha chain protein
transcript id: XM_001218835.1
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: <342978..>345206
location: region:342978-345206:1
so has part: feature:342978-345206:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:342978-345206:1:exon

TB927.1.1340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
codon start: 1
product: FG-GAP repeat protein; intergrin alpha chain protein
translation: MACSTKRDASDIRDGRTERRLPAIPLDAWAFRRMAPQGSITPSGLITADVDGDGVEEVIIGTTEGQLLLLKMGYRTPVYSRTIPATISVVLYSAKTLRLLLVTLEGQCEVIEGFITGSKTIACSSRGGSTTSSRKRDEDATAGVMGSEMCSGGSHSGVYSECLDKEYQPCGASYIFSIPPNCICGDIGVDEKSGEGNIVFLGSYDGHVYVYSVSPLGERLGLLFLHSHVSSIKSFIVPANGTALPPSRDDHLTCAESSSTTTASFTMETWRRCSLLLVCCSQRIVLLGASREEIMHWQGHHQPRTVSMVGYVCEGCAATSACMRPTDAVGSLTIGMETPLSDSSTSLNKTAPLEPKWQFPLYHLSKSNVHLPTEEGGRQVAPQEESTAELHAPWLLPWKYSQHQGSSNATVTTLEIQQCRHSYQRQHDSVASTSTTHDHGESSPKVNDADVIIRSPAAVDVATAPHAAQFAVATEDGRWFIFEMLLAGSSIGTASPGRIGDGPVEGSTSSFRGTVVCLMSGCVQDAGFVERVRVVNVGNDGFQAIFLSMDGTCYALDAHKNTVVTSRVKAGALSFTVMGCASENGEAGSPAGNTAAAAMRQNEALSSLAPCGFSLVSVAVDEVVVLSIGGESHEWTPPTGADGLVRDRGSSALQTRISTNEGGRGIHEGSEQSNRKLLDQTENDAPDEDAVMLKLGALLLKGSHNPGDVERFSEEYRRFVARKFCAFGLTQKEWRMLQQLGE
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 342978..345206
location: region:342978-345206:1
so has part: feature:342978-345206:1:exon

XP_001218836.1
type: Protein
SIO_000068: ncbiprotein

IPR011047
type: InterPro
SIO_000068: interpro

Q4GZ85
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:342978-345206:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS and TP1J20 call A, One WCS read and TP27E7 call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 343286
location: region:343286-343286:1
so has part: feature:343286-343286:1:exon

position:343286:1
position: 343286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343286-343286:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS, TP29E6 and TP1J20 call G, Two WCS reads and TP27E7 call A; type 1 (single nucleotide substitutions); mis-sense mutation at 193 in Tb927.1.1340 S -> N
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 343555
location: region:343555-343555:1
so has part: feature:343555-343555:1:exon

position:343555:1
position: 343555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343555-343555:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS, TP29E6 call G, One WCS read and TP27E7 call C; type 1 (single nucleotide substitutions); mis-sense mutation at 248 in Tb927.1.1340 R -> T
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 343720
location: region:343720-343720:1
so has part: feature:343720-343720:1:exon

position:343720:1
position: 343720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343720-343720:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS, TP29E6 call T, One WCS read and TP27E7 call G; type 1 (single nucleotide substitutions); mis-sense mutation at 249 in Tb927.1.1340 D -> E
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 343724
location: region:343724-343724:1
so has part: feature:343724-343724:1:exon

position:343724:1
position: 343724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343724-343724:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS and TP29E6 call G, One WCS read calls C; type 1 (single nucleotide substitutions); mis-sense mutation at 384 in Tb927.1.1340 E -> D
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 344129
location: region:344129-344129:1
so has part: feature:344129-344129:1:exon

position:344129:1
position: 344129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344129-344129:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS and TP29E6 call A, One WCS read calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 406 in Tb927.1.1340 S -> G
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 344193
location: region:344193-344193:1
so has part: feature:344193-344193:1:exon

position:344193:1
position: 344193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344193-344193:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS call C, Two WCS reads call T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 344615
location: region:344615-344615:1
so has part: feature:344615-344615:1:exon

position:344615:1
position: 344615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344615-344615:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS call G, Two WCS reads call A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 344630
location: region:344630-344630:1
so has part: feature:344630-344630:1:exon

position:344630:1
position: 344630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344630-344630:1:exon

TB927.1.1340
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1340
old locus tag: Tb927.1.1340
note: Majority of WCS calls A, Two WCS reads call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1340
subclass of: SO_0000673
so part of: TB927.1.1340
location: 344708
location: region:344708-344708:1
so has part: feature:344708-344708:1:exon

position:344708:1
position: 344708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344708-344708:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS, TP29E6 and TP1J20 call 14 A, One WCS read and TP27E7 call 13 A; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 345486..345499
location: region:345486-345499:1
so has part: feature:345486-345499:1:region

position:345486:1
position: 345486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345499:1
position: 345499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:345486-345499:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call T, Two WCS reads call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 345742
location: region:345742-345742:1
so has part: feature:345742-345742:1:region

position:345742:1
position: 345742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:345742-345742:1:region

TB927.1.1350
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1350
old locus tag: Tb927.1.1350
so part of: sequence
location: <345785..>348445
location: region:345785-348445:1
so has part: feature:345785-348445:1:exon
subclass of: SO_0000010

4357210
type: Gene
SIO_000068: ncbigene

position:345785:1
position: 345785
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:348445:1
position: 348445
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:345785-348445:1:exon

TB927.1.1350
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1350
old locus tag: Tb927.1.1350
product: kinesin heavy chain, putative
transcript id: XM_001218836.1
SIO_010081: TB927.1.1350
subclass of: SO_0000673
so part of: TB927.1.1350
location: <345785..>348445
location: region:345785-348445:1
so has part: feature:345785-348445:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:345785-348445:1:exon

TB927.1.1350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1350
old locus tag: Tb927.1.1350
codon start: 1
product: kinesin heavy chain, putative
translation: MQTSRPSADNVHVSCRFRPLSSGERNGGLCVHLEGSNHVVCRVQSCQRLGRSNGAPRQQPIPCNSVGGDGFNRFPSADTAVDQYRFSFARVYPPEVGQDEIYNEVARPIVKDVMKGYNGTLLVYGQTGSGKTHTMFGAGEAVGRERSGTISTALYGTAGDDRGPVRAQGGRANVNAGIIPRAVNQIFDMIHSADEALEFEIRAMFVEVYMERVRDLLDHGNLNLQVREGPSGFYVENCKLPYVSSAEEMMQLINSGVCRRVTAATACNEASSRSHCVLNITVKSVNHTKHVATVGKLFLVDLAGSEKVAKTHVDGMQLEEAKMINKSLTTLGHVIMSLADKQAHVPYRDSKLTRILKDSLGGNSRTALVVCCSPSQFNDQETLSTLRFGARAQNVCNVAIVNKQLTAEELKGMLDLARVEIKRLRKLLHDMGVTVPSSGNHGGEEISDCFSGVAESSCGGETFATRVASPCDTAVPGPHSEASAVGHLEETDAVINADGVVDESSVNEGDVVRRGIYDELSGEGISPEVSHLHDNPCVSQGTTEAIRNQLAEQAALIKLLREENAVWEEEHMIAVRELYGYRRYAEHCREVLGEVSITGDVVSRRISSYRERVLAIVAKLCSHSDTTEDNLATQSNEYPNQIKEGRSLVELGATRETCSSVSNNLSQPLLSSHISSRTTMCSLPALGDGTAGNNNTITGSMELACASVESPNGDTLQIRKKYEELQGRLARAMDEIERLQSTNSVLSLDLQLAEKRLQIRHERIESLKFGLRQESASNQELQQSLERQMSAHRTQLQAARNDALYWRQRYDDLLNHCHTSSSSRKPRATHISPIRRRSLTPTLEGVLVARSPSARAPPSSVATSPGRGVIVKPIRGGGSKLEHAFA
SIO_010081: TB927.1.1350
subclass of: SO_0000673
so part of: TB927.1.1350
location: 345785..348445
location: region:345785-348445:1
so has part: feature:345785-348445:1:exon

XP_001218837.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ84
type: GOA
SIO_000068: goa

IPR001752
type: InterPro
SIO_000068: interpro

IPR019821
type: InterPro
SIO_000068: interpro

IPR027640
type: InterPro
SIO_000068: interpro

Q4GZ84
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:345785-348445:1:exon

TB927.1.1350
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1350
old locus tag: Tb927.1.1350
note: Majority of WCS, TP29E6 and TP1J20 call G, Three WCS reads call A; type 1 (single nucleotide substitutions); mis-sense mutation at 21 in Tb927.1.1350 S -> N
SIO_010081: TB927.1.1350
subclass of: SO_0000673
so part of: TB927.1.1350
location: 345846
location: region:345846-345846:1
so has part: feature:345846-345846:1:exon

position:345846:1
position: 345846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:345846-345846:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 348555..348560
location: region:348555-348560:1
so has part: feature:348555-348560:1:region

position:348555:1
position: 348555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348560:1
position: 348560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348555-348560:1:region

TB927.1.1360
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1360
old locus tag: Tb927.1.1360
so part of: sequence
location: <348721..>349077
location: region:348721-349077:1
so has part: feature:348721-349077:1:exon
subclass of: SO_0000010

4357211
type: Gene
SIO_000068: ncbigene

position:348721:1
position: 348721
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:349077:1
position: 349077
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348721-349077:1:exon

TB927.1.1360
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1360
old locus tag: Tb927.1.1360
product: hypothetical protein, unlikely
transcript id: XM_001218837.1
SIO_010081: TB927.1.1360
subclass of: SO_0000673
so part of: TB927.1.1360
location: <348721..>349077
location: region:348721-349077:1
so has part: feature:348721-349077:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:348721-349077:1:exon

TB927.1.1360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1360
old locus tag: Tb927.1.1360
note: GPI-Anchor Signal predicted for Tb927.1.1360 by DGPI v2.04 with cleavage site probability 0.696 near 83
codon start: 1
product: hypothetical protein, unlikely
translation: MFQPLCFFFTFFFFSSVVKFVCWTRGKNKVRYPSVSLFPSGFVFLIAIFTLFLLLFLQTHYFLHTYQKKKKDGEERNETEKGSSRNLLHCLSVCCTPSLKFKSSFALACEWNVMGGGV
SIO_010081: TB927.1.1360
subclass of: SO_0000673
so part of: TB927.1.1360
location: 348721..349077
location: region:348721-349077:1
so has part: feature:348721-349077:1:exon

XP_001218838.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ83
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:348721-349077:1:exon

TB927.1.1360
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1360
old locus tag: Tb927.1.1360
note: Signal anchor predicted for Tb927.1.1360 by SignalP 2.0 HMM (Signal peptide probabilty 0.012, signal anchor probability 0.988) with cleavage site probability 0.004 between residues 19 and 20
SIO_010081: TB927.1.1360
subclass of: SO_0000673
so part of: TB927.1.1360
location: 348721..348775
location: region:348721-348775:1
so has part: feature:348721-348775:1:exon

position:348775:1
position: 348775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348721-348775:1:exon

TB927.1.1360
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1360
old locus tag: Tb927.1.1360
note: 2 probable transmembrane helices predicted for Tb927.1.1360 by TMHMM2.0 at aa 7-26 and 41-63
SIO_010081: TB927.1.1360
subclass of: SO_0000673
so part of: TB927.1.1360
location: join(348739..348798,348841..348909)
location: region:348739-348909:1
so has part: feature:348739-348798:1:exon
so has part: feature:348841-348909:1:exon

position:348739:1
position: 348739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348909:1
position: 348909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348739-348798:1:exon

position:348798:1
position: 348798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:348841-348909:1:exon

position:348841:1
position: 348841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TB927.1.1360
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1360
old locus tag: Tb927.1.1360
note: GPI-Anchor Signal predicted for Tb927.1.1360 by DGPI v2.04 with cleavage site probability 0.696 near 83
SIO_010081: TB927.1.1360
subclass of: SO_0000673
so part of: TB927.1.1360
location: 348964..348969
location: region:348964-348969:1
so has part: feature:348964-348969:1:exon

position:348964:1
position: 348964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348969:1
position: 348969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348964-348969:1:exon

TB927.1.1370
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1370
old locus tag: Tb927.1.1370
so part of: sequence
location: <350095..>352134
location: region:350095-352134:1
so has part: feature:350095-352134:1:exon
subclass of: SO_0000010

4357212
type: Gene
SIO_000068: ncbigene

position:350095:1
position: 350095
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:352134:1
position: 352134
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:350095-352134:1:exon

TB927.1.1370
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1370
old locus tag: Tb927.1.1370
product: rRNA biogenesis protein, putative
transcript id: XM_001218838.1
SIO_010081: TB927.1.1370
subclass of: SO_0000673
so part of: TB927.1.1370
location: <350095..>352134
location: region:350095-352134:1
so has part: feature:350095-352134:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:350095-352134:1:exon

TB927.1.1370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1370
old locus tag: Tb927.1.1370
codon start: 1
product: rRNA biogenesis protein, putative
translation: MQYREYRVHHAAPDGILVQLPGNGGFGKLTVETLGGDALAAALLKRFATNDHIRAVARPTRDVHHYRLLSVQLLELWSGAATYPAPVLSLLLQLFRKHALIGLGTTAMARVVKSSPEKGVVLSLPGGIPAVAVLENVSEEAGAVEVRLLNYDVQVDVVNVTVQYDVVERTPSDVDALQKLLTSVTAGSVVSATVLVSCTDDNCAIVEVPCGDECSVIGYYIYNWPGLSAAGDEKPVVGSCLQLTVEFVPEEPALQDVLPFFVLSRRQHFAGLPAVRCAILPNTSTPHATVGLVGRFPWRDKKRDRRPEVEDINDPDDDDSDDDENTNVNRSKIRKRKLEETIDAYERSMETAVPSSSEEFQRLLLASPNNSYLWVQWMTHHVSLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGTAESLASVFKRALRHALDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRVLKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELGLLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARSYVEAKISASVGSVDPTVKTGGVSVKKGATKDFNATSASAKGSSVSDEATDKHYDGEAEE
SIO_010081: TB927.1.1370
subclass of: SO_0000673
so part of: TB927.1.1370
location: 350095..352134
location: region:350095-352134:1
so has part: feature:350095-352134:1:exon

XP_001218839.1
type: Protein
SIO_000068: ncbiprotein

IPR011990
type: InterPro
SIO_000068: interpro

Q4GZ82
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:350095-352134:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS calls A, TP27E7 calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 352398
location: region:352398-352398:1
so has part: feature:352398-352398:1:region

position:352398:1
position: 352398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352398-352398:1:region

TB927.1.1380
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1380
old locus tag: Tb927.1.1380
so part of: sequence
location: <353241..>354962
location: region:353241-354962:1
so has part: feature:353241-354962:1:exon
subclass of: SO_0000010

4357213
type: Gene
SIO_000068: ncbigene

position:353241:1
position: 353241
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:354962:1
position: 354962
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353241-354962:1:exon

TB927.1.1380
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1380
old locus tag: Tb927.1.1380
product: serine/threonine protein phosphatase 2a regulatory subunit, putative
transcript id: XM_001218839.1
SIO_010081: TB927.1.1380
subclass of: SO_0000673
so part of: TB927.1.1380
location: <353241..>354962
location: region:353241-354962:1
so has part: feature:353241-354962:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:353241-354962:1:exon

TB927.1.1380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1380
old locus tag: Tb927.1.1380
codon start: 1
product: serine/threonine protein phosphatase 2a regulatory subunit, putative
translation: MSEHFKNVKSMIANLRSEDPEARLNSMRGIHVIASTLGPERTREELLPYLTDYLDENDEVLRVFANALGTMLHEVGGPAHVQSILGPLELLCSLDEVTVRDEAVSSLQTVGKALFCETGEAAVQARRDFVGLVMRLGQSTPQCRSSVTYVIATAYPHVAASVKTQLFNLFITLCGDEEIMVRRSACISLGKHMAGVPDTRSSELLNALTKFSRDASDGVRLQAVEAAAALLTVLPPETHSNIVGAVKTLVGDVSWRVRYMAADRLGKLAGVLAPPHVKQIMPFFRLLTQDSEAEIRASAVFNMAGVLAACHDATSKREVLAGGCRLVSDDNSHVRMCLASALLKSVEHVPVEMWSSTVVPTCTQLLTDTEADVRLALVSGFSSMGNTAEARELAPKLIPVVVALAEDPKWRIREVVISQIPHLITSLGRSADEVVEICVQHLVDRVAAIRDAAVQSCCSLVSESGLAWSRDTLFPRLSLMVTANNYLHRVALAHFYESLSEVQQLDRTTVSQLVLPMLRVLARDNVPNVRLRCARAIVAFKRKKILLESDAEPLLSRLVKDTDVDVRFAATEN
SIO_010081: TB927.1.1380
subclass of: SO_0000673
so part of: TB927.1.1380
location: 353241..354962
location: region:353241-354962:1
so has part: feature:353241-354962:1:exon

XP_001218840.1
type: Protein
SIO_000068: ncbiprotein

IPR011989
type: InterPro
SIO_000068: interpro

IPR016024
type: InterPro
SIO_000068: interpro

IPR021133
type: InterPro
SIO_000068: interpro

Q4GZ81
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:353241-354962:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, One WCS read and TP27E7 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 356428
location: region:356428-356428:1
so has part: feature:356428-356428:1:region

position:356428:1
position: 356428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356428-356428:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call 9 T, One WCS read and TP27E7 call 10 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 356460..356468
location: region:356460-356468:1
so has part: feature:356460-356468:1:region

position:356460:1
position: 356460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:356468:1
position: 356468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356460-356468:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of ATACAT in TP27E7; type 5 (insertion/deletion of more than 3 nucleotides in microsatellites)
so part of: sequence
location: 356633..356634
location: region:356633-356634:1
so has part: feature:356633-356634:1:region

position:356633:1
position: 356633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:356634:1
position: 356634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356633-356634:1:region

TB927.1.1390
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1390
old locus tag: Tb927.1.1390
so part of: sequence
location: <356937..>357674
location: region:356937-357674:1
so has part: feature:356937-357674:1:exon
subclass of: SO_0000010

4357214
type: Gene
SIO_000068: ncbigene

position:356937:1
position: 356937
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:357674:1
position: 357674
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356937-357674:1:exon

TB927.1.1390
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1390
old locus tag: Tb927.1.1390
product: hypothetical protein, conserved
transcript id: XM_001218840.1
SIO_010081: TB927.1.1390
subclass of: SO_0000673
so part of: TB927.1.1390
location: <356937..>357674
location: region:356937-357674:1
so has part: feature:356937-357674:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356937-357674:1:exon

TB927.1.1390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1390
old locus tag: Tb927.1.1390
codon start: 1
product: hypothetical protein, conserved
translation: MLVRTWMLLNRPKGPQGLRPGKEYRLTVPYRSEVTMLRLANHKAINSNIRELFKKPLVMNNIKAIPRDLGEIPRDYVLRLLFFHQPIRLVDLWTICKEHDDVPLDSAKHLRLVLKIAKLQRWVYAEKNQTNNLYYYYVHQSRIQEVQQMVRASEVRKKEQESLREIEAEKLRMEEQERRKVALDENIVALQNALVSNIAQIQEFDPGFARSKPYVTESGAVNVGWGLNDGGSAACSSDLDGQQVA
SIO_010081: TB927.1.1390
subclass of: SO_0000673
so part of: TB927.1.1390
location: 356937..357674
location: region:356937-357674:1
so has part: feature:356937-357674:1:exon

XP_001218841.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ80
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:356937-357674:1:exon

TB927.1.1390
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1390
old locus tag: Tb927.1.1390
note: WCS calls G, TP28N5 and TP27E7 call A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1390
subclass of: SO_0000673
so part of: TB927.1.1390
location: 357326
location: region:357326-357326:1
so has part: feature:357326-357326:1:exon

position:357326:1
position: 357326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357326-357326:1:exon

TB927.1.1390
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1390
old locus tag: Tb927.1.1390
note: WCS calls A, TP28N5 and TP27E7 call G; type 1 (single nucleotide substitutions); mis-sense mutation at 143 in Tb927.1.1390 I -> M
SIO_010081: TB927.1.1390
subclass of: SO_0000673
so part of: TB927.1.1390
location: 357365
location: region:357365-357365:1
so has part: feature:357365-357365:1:exon

position:357365:1
position: 357365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357365-357365:1:exon

TB927.1.1390
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1390
old locus tag: Tb927.1.1390
note: WCS calls A, TP27E7 calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1390
subclass of: SO_0000673
so part of: TB927.1.1390
location: 357572
location: region:357572-357572:1
so has part: feature:357572-357572:1:exon

position:357572:1
position: 357572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357572-357572:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call A, One WCS read and TP27E7 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 357715
location: region:357715-357715:1
so has part: feature:357715-357715:1:region

position:357715:1
position: 357715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357715-357715:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of ATATATATAT in one WCS read and TP27E7; type 5
so part of: sequence
location: 357733..357742
location: region:357733-357742:1
so has part: feature:357733-357742:1:region

position:357733:1
position: 357733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357742:1
position: 357742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357733-357742:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call 9 A, One WCS read and TP27E7 call 8 A; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 357745..357753
location: region:357745-357753:1
so has part: feature:357745-357753:1:region

position:357745:1
position: 357745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357753:1
position: 357753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357745-357753:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of GT in three WCS reads; type 5
so part of: sequence
location: 357940..357941
location: region:357940-357941:1
so has part: feature:357940-357941:1:region

position:357940:1
position: 357940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357941:1
position: 357941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357940-357941:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads and TP1J20 call 13 A, Three WCS reads call 15 A; type 6 (insertion/deletion of 2 nucleotides)
so part of: sequence
location: 358198..358210
location: region:358198-358210:1
so has part: feature:358198-358210:1:region

position:358198:1
position: 358198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358210:1
position: 358210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358198-358210:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads and TP1J20 call 8 T, One WCS read calls 9 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 358277..358284
location: region:358277-358284:1
so has part: feature:358277-358284:1:region

position:358277:1
position: 358277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358284:1
position: 358284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358277-358284:1:region

TB927.1.1400
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1400
old locus tag: Tb927.1.1400
so part of: sequence
location: <358355..>358936
location: region:358355-358936:1
so has part: feature:358355-358936:1:exon
subclass of: SO_0000010

4357215
type: Gene
SIO_000068: ncbigene

position:358355:1
position: 358355
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:358936:1
position: 358936
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358355-358936:1:exon

TB927.1.1400
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1400
old locus tag: Tb927.1.1400
product: hypothetical protein, conserved
transcript id: XM_001218841.1
SIO_010081: TB927.1.1400
subclass of: SO_0000673
so part of: TB927.1.1400
location: <358355..>358936
location: region:358355-358936:1
so has part: feature:358355-358936:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:358355-358936:1:exon

TB927.1.1400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1400
old locus tag: Tb927.1.1400
codon start: 1
product: hypothetical protein, conserved
translation: MCDTGVQPPLAVVVPGSPVITQFQCIVEGTNWIVPLGFAPESIVVFLTFPTLLNPGTALGIYLAREDDRAFAYVGHLSNTAPSAILRVPSTFINIDSPVRVLLGVSTEREVDIANLDDATKQQQEQDRAATKLALSERLAEDLYNFVTSYGRVVPAEQNDGKSEEAVFLPMSFVDRWRERVMKRMRKELAFWS
SIO_010081: TB927.1.1400
subclass of: SO_0000673
so part of: TB927.1.1400
location: 358355..358936
location: region:358355-358936:1
so has part: feature:358355-358936:1:exon

XP_001218842.1
type: Protein
SIO_000068: ncbiprotein

IPR008493
type: InterPro
SIO_000068: interpro

Q4GZ79
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:358355-358936:1:exon

TB927.1.1400
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1400
old locus tag: Tb927.1.1400
note: 1 probable transmembrane helix predicted for Tb927.1.1400 by TMHMM2.0 at aa 42-64
SIO_010081: TB927.1.1400
subclass of: SO_0000673
so part of: TB927.1.1400
location: 358478..358546
location: region:358478-358546:1
so has part: feature:358478-358546:1:exon

position:358478:1
position: 358478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358546:1
position: 358546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358478-358546:1:exon

TB927.1.1410
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1410
old locus tag: Tb927.1.1410
so part of: sequence
location: complement(<359665..>360099)
location: region:359665-360099:-1
so has part: feature:359665-360099:-1:exon
subclass of: SO_0000010

4357216
type: Gene
SIO_000068: ncbigene

position:359665:-1
position: 359665
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:360099:-1
position: 360099
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359665-360099:-1:exon

TB927.1.1410
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1410
old locus tag: Tb927.1.1410
product: hypothetical protein, unlikely
transcript id: XM_001218842.1
SIO_010081: TB927.1.1410
subclass of: SO_0000673
so part of: TB927.1.1410
location: complement(<359665..>360099)
location: region:359665-360099:-1
so has part: feature:359665-360099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:359665-360099:-1:exon

TB927.1.1410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1410
old locus tag: Tb927.1.1410
codon start: 1
product: hypothetical protein, unlikely
translation: MPRWQTHTFRLHENTAARPPGKLYVTFFFLFVKFSTFRTALLSFSLTFRSCSLFVFLTLILFPLPQSTVDWLCFIFYFLFSPLPLFYLINLLHSYFLFFVFGVVFVVAALIHPSFPFFFNIYIFPLWVSKKRKKLTSTTSERSD
SIO_010081: TB927.1.1410
subclass of: SO_0000673
so part of: TB927.1.1410
location: complement(359665..360099)
location: region:359665-360099:-1
so has part: feature:359665-360099:-1:exon

XP_001218843.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ78
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:359665-360099:-1:exon

TB927.1.1410
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1410
old locus tag: Tb927.1.1410
note: 3 probable transmembrane helices predicted for Tb927.1.1410 by TMHMM2.0 at aa 40-62, 67-89 and 96-118
SIO_010081: TB927.1.1410
subclass of: SO_0000673
so part of: TB927.1.1410
location: complement(join(359746..359814,359833..359901,359914..359982))
location: region:359746-359982:-1
so has part: feature:359914-359982:-1:exon
so has part: feature:359833-359901:-1:exon
so has part: feature:359746-359814:-1:exon

position:359746:-1
position: 359746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359982:-1
position: 359982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359914-359982:-1:exon

position:359914:-1
position: 359914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:359833-359901:-1:exon

position:359833:-1
position: 359833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359901:-1
position: 359901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:359746-359814:-1:exon

position:359814:-1
position: 359814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.1410
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1410
old locus tag: Tb927.1.1410
note: Signal anchor predicted for Tb927.1.1410 by SignalP 2.0 HMM (Signal peptide probabilty 0.006, signal anchor probability 0.989) with cleavage site probability 0.001 between residues 63 and 64
SIO_010081: TB927.1.1410
subclass of: SO_0000673
so part of: TB927.1.1410
location: complement(359907..360099)
location: region:359907-360099:-1
so has part: feature:359907-360099:-1:exon

position:359907:-1
position: 359907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359907-360099:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 360212..360217
location: region:360212-360217:1
so has part: feature:360212-360217:1:region

position:360212:1
position: 360212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:360217:1
position: 360217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360212-360217:1:region

TB927.1.1420
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1420
old locus tag: Tb927.1.1420
so part of: sequence
location: <360261..>362252
location: region:360261-362252:1
so has part: feature:360261-362252:1:exon
subclass of: SO_0000010

4357217
type: Gene
SIO_000068: ncbigene

position:360261:1
position: 360261
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:362252:1
position: 362252
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360261-362252:1:exon

TB927.1.1420
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1420
old locus tag: Tb927.1.1420
product: hypothetical protein, conserved
transcript id: XM_001218843.1
SIO_010081: TB927.1.1420
subclass of: SO_0000673
so part of: TB927.1.1420
location: <360261..>362252
location: region:360261-362252:1
so has part: feature:360261-362252:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360261-362252:1:exon

TB927.1.1420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1420
old locus tag: Tb927.1.1420
codon start: 1
product: hypothetical protein, conserved
translation: MGAFPSHDAPELIYSMLVLRPSTNSQVEVCLVPLLPRFFNDGHKKAKKKLNELLASKGAHQSSLAASLAPRAPATIAPGKVPDQGIGHALVDYFISSTEGSFFVTTKDAVVSKVAIQAEQGQRERSDISTTGGRSAPGTASTGETQPSNAPSHTAHHSSSHQAMSNSVRPVPFAVCIVDSDVSTGTPGTTGGSAQAAAAKHHHVHANNVVLIKGRRLQLVGFIACCMDRPVRHMTTANPVKPHGASGGAGATSGEGKKQGIPVCLDVIFDDTEAHGFLTESVVLLASFAFRKQFLNCCALHFRAGDPDVESSFGRHMDPLQLRLVMRHDNYRILRLFHSRYPLLDMVKELRVSGGSSAPQFSLYENDGNEVGLEVTFGMNFLTRWMRFVEKMMHVETVVGNHIRCGTTAIMSERDKLIQERRDSGAFLEEEEDDERIFGGAVYAVSLRRWTAAEKQAVQQQQQVPLSGASPMYVYPTTAAPGQYWPQMSVMMGQPPGWPTSVVPLSAAAAAPTAVAPVIGQQQPFVIQASGTRPQLYYASPQPTVSGNATFVTQSGIPIVQQAATASPFGVAATQPASGQQIVYVMQGAQATSASVAAPTVSAMAPGMTPQAFYYPQTTAYAVPYSPYGFQQQPQQQLVTQATHIGTQQQQQQVTSAGQVAQQ
SIO_010081: TB927.1.1420
subclass of: SO_0000673
so part of: TB927.1.1420
location: 360261..362252
location: region:360261-362252:1
so has part: feature:360261-362252:1:exon

XP_001218844.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ77
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:360261-362252:1:exon

TB927.1.1420
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1420
old locus tag: Tb927.1.1420
note: Majority of WCS reads and TP29E6 call A, One WCS read calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1420
subclass of: SO_0000673
so part of: TB927.1.1420
location: 361502
location: region:361502-361502:1
so has part: feature:361502-361502:1:exon

position:361502:1
position: 361502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361502-361502:1:exon

TB927.1.1430
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
so part of: sequence
location: complement(<362667..>363119)
location: region:362667-363119:-1
so has part: feature:362667-363119:-1:exon
subclass of: SO_0000010

4357218
type: Gene
SIO_000068: ncbigene

position:362667:-1
position: 362667
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:363119:-1
position: 363119
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362667-363119:-1:exon

TB927.1.1430
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
product: hypothetical protein, unlikely
transcript id: XM_001218844.1
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: complement(<362667..>363119)
location: region:362667-363119:-1
so has part: feature:362667-363119:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:362667-363119:-1:exon

TB927.1.1430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
codon start: 1
product: hypothetical protein, unlikely
translation: MPMQKYYRHISPLSYFFFLFFFFLISLLLLLLLFLFLFLFLPLIIYFICLPSTRFCTTGHSLFAPFTSLLTTMLAKIYISLFVCLFWREGEGGKRGMYTNTNTNTYTRSTRTYLHRTYILMYILFFPPPQIYIYIYICISFFFLASFFSF
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: complement(362667..363119)
location: region:362667-363119:-1
so has part: feature:362667-363119:-1:exon

XP_001218845.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ76
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:362667-363119:-1:exon

TB927.1.1430
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: 3 probable transmembrane helices predicted for Tb927.1.1430 by TMHMM2.0 at aa 13-45, 65-87 and 122-144
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: complement(join(362688..362756,362859..362927,362985..363083))
location: region:362688-363083:-1
so has part: feature:362985-363083:-1:exon
so has part: feature:362859-362927:-1:exon
so has part: feature:362688-362756:-1:exon

position:362688:-1
position: 362688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363083:-1
position: 363083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362985-363083:-1:exon

position:362985:-1
position: 362985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:362859-362927:-1:exon

position:362859:-1
position: 362859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:362927:-1
position: 362927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:362688-362756:-1:exon

position:362756:-1
position: 362756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.1430
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: WCS, TP29E6 and TP1J10 call 11 A, TP27E7 calls 10 A; type 2 (single nucleotide insertions/deletions)
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: 362689..362699
location: region:362689-362699:1
so has part: feature:362689-362699:1:exon

position:362689:1
position: 362689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362699:1
position: 362699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362689-362699:1:exon

TB927.1.1430
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: Insertion of ATAT in TP27E7; type 5
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: 362729..362730
location: region:362729-362730:1
so has part: feature:362729-362730:1:exon

position:362729:1
position: 362729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362730:1
position: 362730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362729-362730:1:exon

TB927.1.1430
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: Deletion of TTGTGT in TP27E7; type 5
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: 362810..362815
location: region:362810-362815:1
so has part: feature:362810-362815:1:exon

position:362810:1
position: 362810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362815:1
position: 362815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362810-362815:1:exon

TB927.1.1430
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: Deletion of CCCTCCCTCC in TP27E7; type 5
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: 362851..362860
location: region:362851-362860:1
so has part: feature:362851-362860:1:exon

position:362851:1
position: 362851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362860:1
position: 362860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362851-362860:1:exon

TB927.1.1430
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: WCS and TP26E6 call A, TP27E7 calls G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: 362895
location: region:362895-362895:1
so has part: feature:362895-362895:1:exon

position:362895:1
position: 362895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362895-362895:1:exon

TB927.1.1430
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1430
old locus tag: Tb927.1.1430
note: Signal anchor predicted for Tb927.1.1430 by SignalP 2.0 HMM (Signal peptide probabilty 0.000, signal anchor probability 1.000) with cleavage site probability 0.000 between residues 47 and 48
SIO_010081: TB927.1.1430
subclass of: SO_0000673
so part of: TB927.1.1430
location: complement(362975..363119)
location: region:362975-363119:-1
so has part: feature:362975-363119:-1:exon

position:362975:-1
position: 362975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362975-363119:-1:exon

TB927.1.1440
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1440
old locus tag: Tb927.1.1440
so part of: sequence
location: complement(<363327..>363521)
location: region:363327-363521:-1
so has part: feature:363327-363521:-1:exon
subclass of: SO_0000010

4357219
type: Gene
SIO_000068: ncbigene

position:363327:-1
position: 363327
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:363521:-1
position: 363521
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363327-363521:-1:exon

TB927.1.1440
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1440
old locus tag: Tb927.1.1440
product: hypothetical protein, unlikely
transcript id: XM_001218845.1
SIO_010081: TB927.1.1440
subclass of: SO_0000673
so part of: TB927.1.1440
location: complement(<363327..>363521)
location: region:363327-363521:-1
so has part: feature:363327-363521:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:363327-363521:-1:exon

TB927.1.1440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1440
old locus tag: Tb927.1.1440
note: gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MMIAATATAMATAVLIYAPLKREEITQLRVKTAAITNEGVTKNGDNVANENGNDNDDDGEISIS
SIO_010081: TB927.1.1440
subclass of: SO_0000673
so part of: TB927.1.1440
location: complement(363327..363521)
location: region:363327-363521:-1
so has part: feature:363327-363521:-1:exon

XP_001218846.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ75
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:363327-363521:-1:exon

TB927.1.1440
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1440
old locus tag: Tb927.1.1440
note: Signal peptide predicted for Tb927.1.1440 by SignalP 2.0 HMM (Signal peptide probabilty 0.725, signal anchor probability 0.013) with cleavage site probability 0.370 between residues 22 and 23
SIO_010081: TB927.1.1440
subclass of: SO_0000673
so part of: TB927.1.1440
location: complement(363452..363521)
location: region:363452-363521:-1
so has part: feature:363452-363521:-1:exon

position:363452:-1
position: 363452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363452-363521:-1:exon

TB927.1.1450
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1450
old locus tag: Tb927.1.1450
so part of: sequence
location: complement(<364207..>364428)
location: region:364207-364428:-1
so has part: feature:364207-364428:-1:exon
subclass of: SO_0000010

4357220
type: Gene
SIO_000068: ncbigene

position:364207:-1
position: 364207
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:364428:-1
position: 364428
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364207-364428:-1:exon

TB927.1.1450
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1450
old locus tag: Tb927.1.1450
product: hypothetical protein, unlikely
transcript id: XM_001218846.1
SIO_010081: TB927.1.1450
subclass of: SO_0000673
so part of: TB927.1.1450
location: complement(<364207..>364428)
location: region:364207-364428:-1
so has part: feature:364207-364428:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:364207-364428:-1:exon

TB927.1.1450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1450
old locus tag: Tb927.1.1450
note: unlikely gene predicted by glimmer
codon start: 1
product: hypothetical protein, unlikely
translation: MLRIFMCMFVCACGKEGERKGKERKHKHIIMRKCFMYACTNNNNNNDNCTRLCIEYKRTYSRIYHPRTKAASM
SIO_010081: TB927.1.1450
subclass of: SO_0000673
so part of: TB927.1.1450
location: complement(364207..364428)
location: region:364207-364428:-1
so has part: feature:364207-364428:-1:exon

XP_001218847.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ74
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:364207-364428:-1:exon

TB927.1.1450
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1450
old locus tag: Tb927.1.1450
note: Signal peptide predicted for Tb927.1.1450 by SignalP 2.0 HMM (Signal peptide probabilty 0.823, signal anchor probability 0.000) with cleavage site probability 0.527 between residues 17 and 18
SIO_010081: TB927.1.1450
subclass of: SO_0000673
so part of: TB927.1.1450
location: complement(364374..364428)
location: region:364374-364428:-1
so has part: feature:364374-364428:-1:exon

position:364374:-1
position: 364374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364374-364428:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call T, Two WCS reads and TP28N5 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 365903
location: region:365903-365903:1
so has part: feature:365903-365903:1:region

position:365903:1
position: 365903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365903-365903:1:region

TB927.1.1460
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1460
old locus tag: Tb927.1.1460
so part of: sequence
location: <366324..>366866
location: region:366324-366866:1
so has part: feature:366324-366866:1:exon
subclass of: SO_0000010

4357221
type: Gene
SIO_000068: ncbigene

position:366324:1
position: 366324
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:366866:1
position: 366866
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366324-366866:1:exon

TB927.1.1460
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1460
old locus tag: Tb927.1.1460
product: hypothetical protein, unlikely
transcript id: XM_001218847.1
SIO_010081: TB927.1.1460
subclass of: SO_0000673
so part of: TB927.1.1460
location: <366324..>366866
location: region:366324-366866:1
so has part: feature:366324-366866:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366324-366866:1:exon

TB927.1.1460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1460
old locus tag: Tb927.1.1460
codon start: 1
product: hypothetical protein, unlikely
translation: MSLSLSPSLFVSLFYVHFFNSFLLSLSLFFFVKKLCPFRLTTQFSVVFHCIAFTFDGVSRKGSETHKKTKEKGKVKQKKRVKGSYLFIFILSSVRICRPRDIRRLFLCARFWLLVSYPVGSVQWRGCAKKFKEEEEEEGKEKEEKKNKRSKNKNKKEKEEERKGERGAAHLHFYSIAFAL
SIO_010081: TB927.1.1460
subclass of: SO_0000673
so part of: TB927.1.1460
location: 366324..366866
location: region:366324-366866:1
so has part: feature:366324-366866:1:exon

XP_001218848.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ73
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:366324-366866:1:exon

TB927.1.1460
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1460
old locus tag: Tb927.1.1460
note: 1 probable transmembrane helix predicted for Tb927.1.1460 by TMHMM2.0 at aa 10-32
SIO_010081: TB927.1.1460
subclass of: SO_0000673
so part of: TB927.1.1460
location: 366351..366419
location: region:366351-366419:1
so has part: feature:366351-366419:1:exon

position:366351:1
position: 366351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366419:1
position: 366419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366351-366419:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 367515..367520
location: region:367515-367520:1
so has part: feature:367515-367520:1:region

position:367515:1
position: 367515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367520:1
position: 367520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367515-367520:1:region

TB927.1.1470
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1470
old locus tag: Tb927.1.1470
so part of: sequence
location: <367865..>369622
location: region:367865-369622:1
so has part: feature:367865-369622:1:exon
subclass of: SO_0000010

4357222
type: Gene
SIO_000068: ncbigene

position:367865:1
position: 367865
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:369622:1
position: 369622
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367865-369622:1:exon

TB927.1.1470
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1470
old locus tag: Tb927.1.1470
product: hypothetical protein, conserved
transcript id: XM_001218848.1
SIO_010081: TB927.1.1470
subclass of: SO_0000673
so part of: TB927.1.1470
location: <367865..>369622
location: region:367865-369622:1
so has part: feature:367865-369622:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367865-369622:1:exon

TB927.1.1470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1470
old locus tag: Tb927.1.1470
codon start: 1
product: hypothetical protein, conserved
translation: MGGIPSRDAPTTLFCLRYGTHEVGLIPLVYRYFHSDNKELREQFVRVRNDPSIRYSFMRSPEYRMDEIPKKVYTEKTLDKFLDVIDESLYDSTSAMLADEDAPFRPVPCAVCFVYVNGREGSDCFSFYGRRINIIGHFGCYESEDRVSEGPCLHARKTILKAAGDRTLERVVTLAAMMLKGEFFRAVQTVCPTRDPLAMLKRRLNPLILVASTPWNSYPTLKFVYDTAVIAWAYGKEVVEADPPRLSMYEIEQSGEGGLCMRVSGSVLLWAVMRVCETLTLSAVRGSWEQYVLDDFEMQQKEKIVSQWLSTSPHVNSFLGSETFTDLVQKRLATLLREVVRARETPTEDTTLWGESQEYSHDGKLYRIFNSPTCGPFLATVKKKVPKRGSSANTGNASITSATGGDSASDRRSSGVHLTDSPSSGGENKSRSSGQGNPRSKNNGNQPSGFPAHNNAGQPPQYKDAVNSVLQSQFATAAQRVVYQMPPPVGKTSQGQVSVSPQMSPQFVPMFQTAPPPPMQQFSVPYVVMAPPESQPQPQPQPQPQPQPQMGMVFPSTVANYVLLPDGRVGMINAPAPPTMGFWGQ
SIO_010081: TB927.1.1470
subclass of: SO_0000673
so part of: TB927.1.1470
location: 367865..369622
location: region:367865-369622:1
so has part: feature:367865-369622:1:exon

XP_001218849.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ72
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:367865-369622:1:exon

TB927.1.1480
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1480
old locus tag: Tb927.1.1480
so part of: sequence
location: <369800..>370105
location: region:369800-370105:1
so has part: feature:369800-370105:1:exon
subclass of: SO_0000010

4357223
type: Gene
SIO_000068: ncbigene

position:369800:1
position: 369800
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:370105:1
position: 370105
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369800-370105:1:exon

TB927.1.1480
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1480
old locus tag: Tb927.1.1480
product: hypothetical protein, unlikely
transcript id: XM_001218849.1
SIO_010081: TB927.1.1480
subclass of: SO_0000673
so part of: TB927.1.1480
location: <369800..>370105
location: region:369800-370105:1
so has part: feature:369800-370105:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:369800-370105:1:exon

TB927.1.1480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1480
old locus tag: Tb927.1.1480
codon start: 1
product: hypothetical protein, unlikely
translation: MYSLCYPHSSTSRRAKRKRNKRRNVTLCFGFYLPPPLPVSSLCLSSPAYTCAIVLRAKMVSFVCLFICSVLKSFHCFIICSCGGASFFLFLVCAYIYIYIY
SIO_010081: TB927.1.1480
subclass of: SO_0000673
so part of: TB927.1.1480
location: 369800..370105
location: region:369800-370105:1
so has part: feature:369800-370105:1:exon

XP_001218850.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ70
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:369800-370105:1:exon

TB927.1.1480
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1480
old locus tag: Tb927.1.1480
note: 3 probable transmembrane helices predicted for Tb927.1.1480 by TMHMM2.0 at aa 25-42, 52-71 and 78-100
SIO_010081: TB927.1.1480
subclass of: SO_0000673
so part of: TB927.1.1480
location: join(369872..369925,369953..370012,370031..370099)
location: region:369872-370099:1
so has part: feature:369872-369925:1:exon
so has part: feature:369953-370012:1:exon
so has part: feature:370031-370099:1:exon

position:369872:1
position: 369872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370099:1
position: 370099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369872-369925:1:exon

position:369925:1
position: 369925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:369953-370012:1:exon

position:369953:1
position: 369953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370012:1
position: 370012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:370031-370099:1:exon

position:370031:1
position: 370031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call 10 A, One WCS read calls 21 A; type 6 (insertion/deletion of 6 or more nucleotides)
so part of: sequence
location: 372145..372154
location: region:372145-372154:1
so has part: feature:372145-372154:1:region

position:372145:1
position: 372145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:372154:1
position: 372154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:372145-372154:1:region

TB927.1.1490
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1490
old locus tag: Tb927.1.1490
so part of: sequence
location: complement(<373646..>374032)
location: region:373646-374032:-1
so has part: feature:373646-374032:-1:exon
subclass of: SO_0000010

4357224
type: Gene
SIO_000068: ncbigene

position:373646:-1
position: 373646
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:374032:-1
position: 374032
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:373646-374032:-1:exon

TB927.1.1490
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1490
old locus tag: Tb927.1.1490
product: hypothetical protein, unlikely
transcript id: XM_001218850.1
SIO_010081: TB927.1.1490
subclass of: SO_0000673
so part of: TB927.1.1490
location: complement(<373646..>374032)
location: region:373646-374032:-1
so has part: feature:373646-374032:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:373646-374032:-1:exon

TB927.1.1490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1490
old locus tag: Tb927.1.1490
codon start: 1
product: hypothetical protein, unlikely
translation: MELSRTRSATKGIGQGGMQLTNISNGNYLSMSHPTLPFTYVTHACKQTQIHKIRSYAYLRNFMHDNISHFHYLPPLSLFYCWFNNNNIYIYSHPLRFAFYFCLSFKCTQTHSLFPSRSIALLHTNTHM
SIO_010081: TB927.1.1490
subclass of: SO_0000673
so part of: TB927.1.1490
location: complement(373646..374032)
location: region:373646-374032:-1
so has part: feature:373646-374032:-1:exon

XP_001218851.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ69
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:373646-374032:-1:exon

TB927.1.1500
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1500
old locus tag: Tb927.1.1500
so part of: sequence
location: <374878..>376872
location: region:374878-376872:1
so has part: feature:374878-376872:1:exon
subclass of: SO_0000010

4357225
type: Gene
SIO_000068: ncbigene

position:374878:1
position: 374878
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:376872:1
position: 376872
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374878-376872:1:exon

TB927.1.1500
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1500
old locus tag: Tb927.1.1500
product: hypothetical protein, conserved
transcript id: XM_001218851.1
SIO_010081: TB927.1.1500
subclass of: SO_0000673
so part of: TB927.1.1500
location: <374878..>376872
location: region:374878-376872:1
so has part: feature:374878-376872:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:374878-376872:1:exon

TB927.1.1500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1500
old locus tag: Tb927.1.1500
note: GPI-Anchor Signal predicted for Tb927.1.1500 by DGPI v2.04 with cleavage site probability 0.442 near 649
codon start: 1
product: hypothetical protein, conserved
translation: MGGAPSREATVVYSYLRGTYEIGLIPLTSAFFGRPSGRGEHEGENVLRGHFLQMREDLFAACTLPTRNKVLSWTEIVPNRFTGEDLDAFLEIVDKRLYPTNAAMVADKNSPLLPVPCAVCLVCKDGRERRGSFRWRGRNIVIIGYFGCMDEKLDAAFKTEKRTPRQGMYSITAAVFPSIGDRTFDRVLALAPVMLRGQFVGSVLQLRRGGGEFATPLSERGEMVDVSSEAPSLGAGIGGVVGQSDGLIHEDSAVDSAFEMFVERVSQMSVFVEVVSDNYSSLKSLVENVAFIQIHTQAEPKQCTLDLPPIVQNAFNRTTTASSCEKKADAEGHHAEKSPPQRSSAMEQGSSCCTVQGVSCSLERDDLTDLSSVEPEGSSHLSKVPTEDGGSFHFCTEIVRVHFNERYVSLAIQWLSSFFRKPTLLENGYWVHYCLKKEEEVIRRILCHRDTIVSGWRTSHPELANQYMGDGTDKLLEHVRILQHELQQARKAAEEPTLRKKASTPPTLPCPNTTSMAVLAPPPPPHVMPYAVPPLPSPVYFVQQQPVGNPMFVSLLPFQQVQQVPQVQQIPQFQQVPQIQPLQQISHVQQIPQLQQTQPVQSISHVQQISHVQPIHQVQQISHVQPMPLYHLQPPELQQPSVCYLPFGDGGALPPSYVIPSSLS
SIO_010081: TB927.1.1500
subclass of: SO_0000673
so part of: TB927.1.1500
location: 374878..376872
location: region:374878-376872:1
so has part: feature:374878-376872:1:exon

XP_001218852.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ71
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:374878-376872:1:exon

TB927.1.1500
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1500
old locus tag: Tb927.1.1500
note: GPI-Anchor Signal predicted for Tb927.1.1500 by DGPI v2.04 with cleavage site probability 0.442 near 649
SIO_010081: TB927.1.1500
subclass of: SO_0000673
so part of: TB927.1.1500
location: 376822..376827
location: region:376822-376827:1
so has part: feature:376822-376827:1:exon

position:376822:1
position: 376822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:376827:1
position: 376827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376822-376827:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP1J20 call 10 T, One WCS read calls 8 T; type 6 (insertion/deletion of 2 nucleotides)
so part of: sequence
location: 377292..377301
location: region:377292-377301:1
so has part: feature:377292-377301:1:region

position:377292:1
position: 377292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:377301:1
position: 377301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377292-377301:1:region

TB927.1.1510
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1510
old locus tag: Tb927.1.1510
so part of: sequence
location: complement(<378094..>378501)
location: region:378094-378501:-1
so has part: feature:378094-378501:-1:exon
subclass of: SO_0000010

4357226
type: Gene
SIO_000068: ncbigene

position:378094:-1
position: 378094
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:378501:-1
position: 378501
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378094-378501:-1:exon

TB927.1.1510
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1510
old locus tag: Tb927.1.1510
product: hypothetical protein, unlikely
transcript id: XM_001218852.1
SIO_010081: TB927.1.1510
subclass of: SO_0000673
so part of: TB927.1.1510
location: complement(<378094..>378501)
location: region:378094-378501:-1
so has part: feature:378094-378501:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:378094-378501:-1:exon

TB927.1.1510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1510
old locus tag: Tb927.1.1510
codon start: 1
product: hypothetical protein, unlikely
translation: MSVCFVVSNPISISISITFYFYFCFVSNSTKHSIFNKPQNKRMQTCVFMCTFFICFFLSFLFLLCFFLPSFLISFFSFSLPLLFLFFLFFTLLPEQAHTISDTTIYIYIYIYNYLYISYIYIYINVLSLPATQGI
SIO_010081: TB927.1.1510
subclass of: SO_0000673
so part of: TB927.1.1510
location: complement(378094..378501)
location: region:378094-378501:-1
so has part: feature:378094-378501:-1:exon

XP_001218853.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ68
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:378094-378501:-1:exon

TB927.1.1510
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1510
old locus tag: Tb927.1.1510
note: 4 probable transmembrane helices predicted for Tb927.1.1510 by TMHMM2.0 at aa 4-26, 45-67, 71-93 and 105-127
SIO_010081: TB927.1.1510
subclass of: SO_0000673
so part of: TB927.1.1510
location: complement(join(378121..378189,378223..378291,378301..378369,378424..378492))
location: region:378121-378492:-1
so has part: feature:378424-378492:-1:exon
so has part: feature:378301-378369:-1:exon
so has part: feature:378223-378291:-1:exon
so has part: feature:378121-378189:-1:exon

position:378121:-1
position: 378121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378492:-1
position: 378492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378424-378492:-1:exon

position:378424:-1
position: 378424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:378301-378369:-1:exon

position:378301:-1
position: 378301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378369:-1
position: 378369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:378223-378291:-1:exon

position:378223:-1
position: 378223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378291:-1
position: 378291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:378121-378189:-1:exon

position:378189:-1
position: 378189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TB927.1.1510
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1510
old locus tag: Tb927.1.1510
note: Deletion of ATAT in TP27E7; type 5
SIO_010081: TB927.1.1510
subclass of: SO_0000673
so part of: TB927.1.1510
location: 378145..378148
location: region:378145-378148:1
so has part: feature:378145-378148:1:exon

position:378145:1
position: 378145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378148:1
position: 378148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378145-378148:1:exon

TB927.1.1510
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1510
old locus tag: Tb927.1.1510
note: Signal anchor predicted for Tb927.1.1510 by SignalP 2.0 HMM (Signal peptide probabilty 0.000, signal anchor probability 0.996) with cleavage site probability 0.000 between residues 16 and 17
SIO_010081: TB927.1.1510
subclass of: SO_0000673
so part of: TB927.1.1510
location: complement(378450..378501)
location: region:378450-378501:-1
so has part: feature:378450-378501:-1:exon

position:378450:-1
position: 378450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378450-378501:-1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS, TP1J10 and TP29E6 call G, One WCS read calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 379097
location: region:379097-379097:1
so has part: feature:379097-379097:1:region

position:379097:1
position: 379097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379097-379097:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of GAAAAA in one WCS read; type 5
so part of: sequence
location: 379116..379117
location: region:379116-379117:1
so has part: feature:379116-379117:1:region

position:379116:1
position: 379116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379117:1
position: 379117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379116-379117:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of A in one WCS read; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 379221
location: region:379221-379221:1
so has part: feature:379221-379221:1:region

position:379221:1
position: 379221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379221-379221:1:region

TB927.1.1520
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1520
old locus tag: Tb927.1.1520
so part of: sequence
location: <379597..>379935
location: region:379597-379935:1
so has part: feature:379597-379935:1:exon
subclass of: SO_0000010

4357227
type: Gene
SIO_000068: ncbigene

position:379597:1
position: 379597
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:379935:1
position: 379935
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379597-379935:1:exon

TB927.1.1520
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1520
old locus tag: Tb927.1.1520
product: hypothetical protein, unlikely
transcript id: XM_001218853.1
SIO_010081: TB927.1.1520
subclass of: SO_0000673
so part of: TB927.1.1520
location: <379597..>379935
location: region:379597-379935:1
so has part: feature:379597-379935:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:379597-379935:1:exon

TB927.1.1520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1520
old locus tag: Tb927.1.1520
codon start: 1
product: hypothetical protein, unlikely
translation: MMEGNDVKRETRAFFLCACLYVFPCFSFCFDLSRCGVTGVCKGTFSPSLLLLLLLLLSIVISIPIPISIPTTAIIIIIIHTIPIATTMIIIIITIIIIVIVTIITPRLYLYS
SIO_010081: TB927.1.1520
subclass of: SO_0000673
so part of: TB927.1.1520
location: 379597..379935
location: region:379597-379935:1
so has part: feature:379597-379935:1:exon

XP_001218854.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ67
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:379597-379935:1:exon

TB927.1.1520
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1520
old locus tag: Tb927.1.1520
note: Signal anchor predicted for Tb927.1.1520 by SignalP 2.0 HMM (Signal peptide probabilty 0.013, signal anchor probability 0.985) with cleavage site probability 0.005 between residues 29 and 30
SIO_010081: TB927.1.1520
subclass of: SO_0000673
so part of: TB927.1.1520
location: 379597..379681
location: region:379597-379681:1
so has part: feature:379597-379681:1:exon

position:379681:1
position: 379681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379597-379681:1:exon

TB927.1.1520
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1520
old locus tag: Tb927.1.1520
note: 3 probable transmembrane helices predicted for Tb927.1.1520 by TMHMM2.0 at aa 13-32, 47-69 and 82-104
SIO_010081: TB927.1.1520
subclass of: SO_0000673
so part of: TB927.1.1520
location: join(379633..379692,379735..379803,379840..379908)
location: region:379633-379908:1
so has part: feature:379633-379692:1:exon
so has part: feature:379735-379803:1:exon
so has part: feature:379840-379908:1:exon

position:379633:1
position: 379633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379908:1
position: 379908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379633-379692:1:exon

position:379692:1
position: 379692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:379735-379803:1:exon

position:379735:1
position: 379735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379803:1
position: 379803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:379840-379908:1:exon

position:379840:1
position: 379840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of ATATATATATATAT in one WCS read; type 5
so part of: sequence
location: 382380..382393
location: region:382380-382393:1
so has part: feature:382380-382393:1:region

position:382380:1
position: 382380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382393:1
position: 382393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382380-382393:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, Two WCS reads and TP27E7 call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 382606
location: region:382606-382606:1
so has part: feature:382606-382606:1:region

position:382606:1
position: 382606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382606-382606:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call C, Two WCS reads and TP27E7 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 382876
location: region:382876-382876:1
so has part: feature:382876-382876:1:region

position:382876:1
position: 382876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382876-382876:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call T, One WCS read and TP27E7 call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 383109
location: region:383109-383109:1
so has part: feature:383109-383109:1:region

position:383109:1
position: 383109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383109-383109:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS reads call 6 A, One WCS read calls 7 A; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 383394..383399
location: region:383394-383399:1
so has part: feature:383394-383399:1:region

position:383394:1
position: 383394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383399:1
position: 383399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383394-383399:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 384189..384194
location: region:384189-384194:1
so has part: feature:384189-384194:1:region

position:384189:1
position: 384189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:384194:1
position: 384194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:384189-384194:1:region

TB927.1.1530
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1530
old locus tag: Tb927.1.1530
so part of: sequence
location: <385710..>390938
location: region:385710-390938:1
so has part: feature:385710-390938:1:exon
subclass of: SO_0000010

4357228
type: Gene
SIO_000068: ncbigene

position:385710:1
position: 385710
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:390938:1
position: 390938
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:385710-390938:1:exon

TB927.1.1530
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1530
old locus tag: Tb927.1.1530
product: protein kinase, putative
transcript id: XM_001218854.1
SIO_010081: TB927.1.1530
subclass of: SO_0000673
so part of: TB927.1.1530
location: <385710..>390938
location: region:385710-390938:1
so has part: feature:385710-390938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:385710-390938:1:exon

TB927.1.1530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1530
old locus tag: Tb927.1.1530
codon start: 1
product: protein kinase, putative
translation: MVSKEENANIKKGEESDAYLQERGINNIIENLLHDITKCRPDDHLEFMKEWLATRETGKKEFSDGNEAKQMIESPLEREATVGETSEFISETVPEFAFFQPVKKPSTVSWALGARGVDSSRALFTSSRKSPQPIDSVNTTSSSSGSSALQNNLSVAAQGVSMWVPSAAPLKASPAIPSNPLPLSPTTSEGLVSCGELPSSVKKIIEGVRGLSPADHTAVIAFIDGLANRAATTRLGRRKLSNTRGSFGVNFNVDSCGPTMSEGAVPPCISLLVDDDGNVGGERKLSSVQLQQLVGDALTTSMIATGEIFMEEERAGQLSASTTQGASTLGRRVKKGSNLQLARFTDCFSMSDQILPGSNGGVGSGSGPNDGATDLSQMFSSVDEFAAVPVSFIQQYMQHSRLSSTVSRVDSEYSSGATVSSEDEVSVLRKAFRACKRFSDYSETEIEVLARNAQRLELLAGHTCNFKDSIFYVHSGLLRVENNEGVLRELPAGTFLDAQSCEQLNDAREPLEVRAVSDALVLMLKDEALGTIQENEKKLKKRMFVRCLQKSPLFATVPLKLLKNIANYMHVRTVVQGKVLLRKGEHVDWLSVVISGTVSRVVAGGNGNHEVLPQNKQKGGPSSCAAPYILPPESQSGFEFGELELLFNSPMLTDVVATTPVTLARVCTAFVHSLLPHQIINDMKYAVATNPSAGPLLTIAPDAVRHSVKMFMEHYCQSKRLGGSRLRKRISVSSTGTNSTRGFADSVRCGVLASGAKASGGANNLKVSSAGEIVYAGKCNYYRFPIAALGLGNTVVVAVVSDGTIIRWNDSAERITGFSRQQVLGHSVFSSLTTDSARRSMREQLKLVRNVAGNWNQYVSAGLSSPQVYRFRQASGTHSVGLLLSVIPSSAGSNEDVLLLVGREADNNAMTSYVEDTTRWLNDVLRPQLSAFRKRVCEYEERKWNITLEEGAKLHGYVEACNQLMDRYMRLANLNKHSVDALWKPVRMQNVLRQFLQEVTPHVQRAGNKLTTDVVAGPKGEVFLHVEYVLDVLRGMVLDANKNRPNYHMHIVVEAVLPTTMHQDSTTMPCQGEKSTSCDLAFHSVLDQSRVSLDTPHCTTSQITASEDSIRQRSAHSPRQLSKWPSYMQLIRFIFTISESESGLSMANDNTSGGAATTPSGEVPRSSKIHHSFYAGKECGDLVAAMGGEVFSEQRGMNGSGHCVTVELPLLPTPWEEEDDEDEAPTSSTTGPPFAVILADKNEKERNSVCKLLWARRHPVFSVSSLSEVMMRIESPDIGLLIIDPCHLDMTEGESKTFAKAPYPFNMEHGGNHFVVLIYTEDFDDWRVQKMKKCSHVIELPKPATTSLLHSTLYEAERMVIRVREYEERVAQMRSAFREFQAERYEMGKVLGRGSYGEVYEVVDRLTGGKLAVKRMTLSDGLLAADVAEEFLSVTSMRHKNMIHYFYCEQESETVLRLYMELASGGTLKDKIRQHGGPLPLPTVVQYLEDLCDGLAYIHSNLFVHGDIKTANALVDQYGRVKIGDFGTAKRLKRKSEKLYKFVGTPRFMAPELINADATQGHGYDQKGDIWSLGCVALELATGKPPFWHIEEAQGIGIFNFLINLKETPDLSIIEHSDPDFYAFVRRCLHVDPKERPTAQELLTSNLFQRAGTSVRDMRLAQQIQAATKLHEYAALKEDNSDDENDDDDDDEDDDDDDMFVECDFPLVFSGVGTFPNGDQNVATSNRGNIDNEKKGTAKLSG
SIO_010081: TB927.1.1530
subclass of: SO_0000673
so part of: TB927.1.1530
location: 385710..390938
location: region:385710-390938:1
so has part: feature:385710-390938:1:exon

XP_001218855.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ66
type: GOA
SIO_000068: goa

IPR000014
type: InterPro
SIO_000068: interpro

IPR000595
type: InterPro
SIO_000068: interpro

IPR000719
type: InterPro
SIO_000068: interpro

IPR002290
type: InterPro
SIO_000068: interpro

IPR011009
type: InterPro
SIO_000068: interpro

IPR013767
type: InterPro
SIO_000068: interpro

IPR014710
type: InterPro
SIO_000068: interpro

IPR017441
type: InterPro
SIO_000068: interpro

IPR018490
type: InterPro
SIO_000068: interpro

Q4GZ66
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:385710-390938:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 391036..391041
location: region:391036-391041:1
so has part: feature:391036-391041:1:region

position:391036:1
position: 391036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:391041:1
position: 391041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391036-391041:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of T in TP28N5 and TP27E7; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 392946
location: region:392946-392946:1
so has part: feature:392946-392946:1:region

position:392946:1
position: 392946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392946-392946:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS and TP1J20 call T, TP28N5 and TP27E7 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 392947
location: region:392947-392947:1
so has part: feature:392947-392947:1:region

position:392947:1
position: 392947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392947-392947:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS call 9 T, TP27E7 calls 10 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 393300..393308
location: region:393300-393308:1
so has part: feature:393300-393308:1:region

position:393300:1
position: 393300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:393308:1
position: 393308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393300-393308:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Insertion of TC in TP27E7; type 5
so part of: sequence
location: 393745..393746
location: region:393745-393746:1
so has part: feature:393745-393746:1:region

position:393745:1
position: 393745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:393746:1
position: 393746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393745-393746:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS calls A, TP27E7 calls G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 393955
location: region:393955-393955:1
so has part: feature:393955-393955:1:region

position:393955:1
position: 393955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393955-393955:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS and TP29E6 call T, TP27E7 calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 394054
location: region:394054-394054:1
so has part: feature:394054-394054:1:region

position:394054:1
position: 394054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394054-394054:1:region

TB927.1.1540
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1540
old locus tag: Tb927.1.1540
so part of: sequence
location: <394806..>396761
location: region:394806-396761:1
so has part: feature:394806-396761:1:exon
subclass of: SO_0000010

4357229
type: Gene
SIO_000068: ncbigene

position:394806:1
position: 394806
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:396761:1
position: 396761
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394806-396761:1:exon

TB927.1.1540
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1540
old locus tag: Tb927.1.1540
product: hypothetical protein, conserved
transcript id: XM_001218855.1
SIO_010081: TB927.1.1540
subclass of: SO_0000673
so part of: TB927.1.1540
location: <394806..>396761
location: region:394806-396761:1
so has part: feature:394806-396761:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:394806-396761:1:exon

TB927.1.1540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1540
old locus tag: Tb927.1.1540
codon start: 1
product: hypothetical protein, conserved
translation: MTERELVTLALGNYATLVAAQWANGTTSYDVAHNTLYTERHLRAVCGGAVDNNRSELQSGTDGLIRVPRLVLLDAPHATRLRCKPSLNAAAAVQNEESEGEHEQNETRIYDDDDDDDDDDESESEKDAGGDDAESRYYTRGEVGTGVFLQGDSLAMNSETHETGAFDAQRSTSETAVSSFQKSQPSLKAIKRRLFREKDDLIPWWQYICSGVASDAVHVLHPLHRIGGIPTAGGNDIPLLHNFGFGMSHLRSSVSSNVADVVESLRRQLEDADLLQGLQCFVDGDSAFGGAACNIMEEFWEDAGSKVPATFFCCFQTLPEEVAAAHSDVDFADRRKDEQCLNRLLATAKLSSHDSAVYVPMELAQWRTSFASSSSLNGSTHLAPKAAAWLQDDTATAQVVASFADTTLYGTRDEGKLNTGGCGGPAFYMQDWQAAVRPTRCLRVASALTSMPMPVHDVRLPRGDLWDFLQRNPLLQTSCGEGGGYFAPLTHAVSSGPEKESGRVLGHAVTLRGAGQLHDLTYPRQEALLRYALPLRSGNYLPLITDNSYPISSTFPRDFVLPNELVSSGALQGIDMGSHIVSTYDSAPMLQSIVAQAQKVVRRSRHLHEASYEMDGDEWKEVLEDVMVIRDDYYHPADEDYADNGDDISMN
SIO_010081: TB927.1.1540
subclass of: SO_0000673
so part of: TB927.1.1540
location: 394806..396761
location: region:394806-396761:1
so has part: feature:394806-396761:1:exon

XP_001218856.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ65
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:394806-396761:1:exon

TB927.1.1540
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1540
old locus tag: Tb927.1.1540
note: Signal peptide predicted for Tb927.1.1540 by SignalP 2.0 HMM (Signal peptide probabilty 0.736, signal anchor probability 0.009) with cleavage site probability 0.360 between residues 20 and 21
SIO_010081: TB927.1.1540
subclass of: SO_0000673
so part of: TB927.1.1540
location: 394806..394863
location: region:394806-394863:1
so has part: feature:394806-394863:1:exon

position:394863:1
position: 394863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394806-394863:1:exon

TB927.1.1540
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1540
old locus tag: Tb927.1.1540
note: Majority of WCS and TP1J20 call C, One WCS read and TP27E7 call T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1540
subclass of: SO_0000673
so part of: TB927.1.1540
location: 395162
location: region:395162-395162:1
so has part: feature:395162-395162:1:exon

position:395162:1
position: 395162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395162-395162:1:exon

TB927.1.1540
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1540
old locus tag: Tb927.1.1540
note: WCS and TP1J20 call T, TP27E7 calls C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1540
subclass of: SO_0000673
so part of: TB927.1.1540
location: 395463
location: region:395463-395463:1
so has part: feature:395463-395463:1:exon

position:395463:1
position: 395463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395463-395463:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS, TP29E6 and TP1J20 call G, TP10C4 calls A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 396871
location: region:396871-396871:1
so has part: feature:396871-396871:1:region

position:396871:1
position: 396871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396871-396871:1:region

TB927.1.1550
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
so part of: sequence
location: <397190..>399262
location: region:397190-399262:1
so has part: feature:397190-399262:1:exon
subclass of: SO_0000010

4357230
type: Gene
SIO_000068: ncbigene

position:397190:1
position: 397190
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:399262:1
position: 399262
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397190-399262:1:exon

TB927.1.1550
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
product: tubulin-tyrosine ligase, putative
transcript id: XM_001218856.1
SIO_010081: TB927.1.1550
subclass of: SO_0000673
so part of: TB927.1.1550
location: <397190..>399262
location: region:397190-399262:1
so has part: feature:397190-399262:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:397190-399262:1:exon

TB927.1.1550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
codon start: 1
product: tubulin-tyrosine ligase, putative
translation: MTDGVTLHGETDVTVQRQQQERNKRIGGGAFHPTTPSVYRFESRDDCTVWETTSAPHTQKRSAAADEYVTVCLSPFHGRRPTILFKPFDRPCDDDLLGADKHIYIEPSPLPRLQSDATEERSQEEGVFIKCQRTEQIARTGPYGTLSFTMPAPAVRFSAVMCALERAGFVEDTSLLSKSWLLKWCKRPVRSDFSKLRLFQRINHFPGTWRLGKKDELHRHLVAARVRWNAQIASDSGGYGERHRSSTNSNGDCCEGGNSEHMNFFPEAWVLPDEQEELNRVLCAKEERGNVFIAKPTTAACGRGIQLLVAGEPSHSSLMRRLNGVHNNSDSTQRGRGENNTPNFQCSNGADIRRSSNRMIVQRYVSDPLLVEGYKFDLRLYVVVTSYVPLRAYLYTEGLVRFATSPYPNDPAGVRAEAVMGERTLTAHLTNFTINKKSEDFFSPAGVHTNDADVEDTASVNSASKWTLSALESHFNKHGLDWDGTMKQIHDILVKVLLSVQPHVKAEMDSIASGGSGSRVRDSCFEVYGVDVLLRRPPSSKVIPIPVLMEVNIMPSLSTHYSLLDQCVKGNFVADMLTLVGLTAGSSPVSAGGTRCKGNGDGNMSPSEIYGHAFLDSLNDVTEREACVRAEEEQLRSRNFIRICPTSESYNRYCALFSEPEGVGNRCRSLDEVLSAWEQARRDNPPSWAS
SIO_010081: TB927.1.1550
subclass of: SO_0000673
so part of: TB927.1.1550
location: 397190..399262
location: region:397190-399262:1
so has part: feature:397190-399262:1:exon

XP_001218857.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ64
type: GOA
SIO_000068: goa

IPR004344
type: InterPro
SIO_000068: interpro

Q4GZ64
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:397190-399262:1:exon

TB927.1.1550
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
note: Majority of WCS, TP29E6 and TP1J20 call A, One WCS read and TP10C4 call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1550
subclass of: SO_0000673
so part of: TB927.1.1550
location: 397747
location: region:397747-397747:1
so has part: feature:397747-397747:1:exon

position:397747:1
position: 397747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397747-397747:1:exon

TB927.1.1550
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
note: Majority of WCS, TP29E6 and TP1J20 call T, One WCS read and TP10C4 call C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1550
subclass of: SO_0000673
so part of: TB927.1.1550
location: 397765
location: region:397765-397765:1
so has part: feature:397765-397765:1:exon

position:397765:1
position: 397765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397765-397765:1:exon

TB927.1.1550
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
note: WCS and TP1J20 call A, TP10C4 calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 331 in Tb927.1.1550 S -> G
SIO_010081: TB927.1.1550
subclass of: SO_0000673
so part of: TB927.1.1550
location: 398180
location: region:398180-398180:1
so has part: feature:398180-398180:1:exon

position:398180:1
position: 398180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398180-398180:1:exon

TB927.1.1550
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1550
old locus tag: Tb927.1.1550
note: Majority of WCS and TP29E6 call T, One WCS read and TP10C4 call C; type 1 (single nucleotide substitutions); mis-sense mutation at 539 in Tb927.1.1550 S -> P
SIO_010081: TB927.1.1550
subclass of: SO_0000673
so part of: TB927.1.1550
location: 398804
location: region:398804-398804:1
so has part: feature:398804-398804:1:exon

position:398804:1
position: 398804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398804-398804:1:exon

TB927.1.1560
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1560
old locus tag: Tb927.1.1560
so part of: sequence
location: <399676..>401853
location: region:399676-401853:1
so has part: feature:399676-401853:1:exon
subclass of: SO_0000010

4357231
type: Gene
SIO_000068: ncbigene

position:399676:1
position: 399676
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:401853:1
position: 401853
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399676-401853:1:exon

TB927.1.1560
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1560
old locus tag: Tb927.1.1560
product: vesicular-fusion protein NsF; N-ethylmaleimide sensitive factor (NsF)
transcript id: XM_001218857.1
SIO_010081: TB927.1.1560
subclass of: SO_0000673
so part of: TB927.1.1560
location: <399676..>401853
location: region:399676-401853:1
so has part: feature:399676-401853:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:399676-401853:1:exon

TB927.1.1560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1560
old locus tag: Tb927.1.1560
codon start: 1
product: vesicular-fusion protein NsF; N-ethylmaleimide sensitive factor (NsF)
translation: MGKSFVVRSVLTDEDSYANRIYLNPADKALYKHPDGVVMIKNYPFTIDVRGPIERGEVAMNSIQRRLVGVTTTAGSVVELEDYVGSVSCITTMHVLVEHVAASKRGGTLDCDLFIKTFRRQYNFQCFRDKQALAVKVADMKLLVTITKLVVENDGTVGQVSENMGLIVRVGEKSEITLNNLPDDQIDAQQPQILQTFNLEGLGIGGLSSEFAQIFRRAFASRLFPQSFVKKVGVKHVKGVLLYGPPGTGKTLIARKIGEILNCRPPKIVNGPEVFSKYVGATEENVRKLFADAEAEAAAKGDQSQLHLIIFDEFDSICKQRGATRDSTGVNDNVVNQLLSKIDGVNSLNNVLLIGMTNRIDLIDEAILRPGRFEVHVEIGLPNEKGRVEILRIHTRGMQENKVLGKDVDIEKLAALTKNYSGAELEGVVRSASSNAFNRHINLEDPSEIINPQDVFVTQNDFLTAIEELKPAFGQAKEECNNLKRGGIINYGKEWVGVEDRCRQYVDQLKSEGKRINTLTVLIDGRPGSGKSAVAAHLADMAGFPYVRVISNEDMVGYGEAQKVNIIRKAFDDAGKSPFSTVILDDVERIIEFSYMGGRYSNAILQALLVLIKRPPPNERKLLVVATTSMSEVMDTLELTSCFSVKMHVPCAPQSALEKIAQEMGLQWMDEQTKVTCKTAITEPMPIKQMMLLLEMSAEKCGTGQLTIMAQTFSQALDSIAGRSE
SIO_010081: TB927.1.1560
subclass of: SO_0000673
so part of: TB927.1.1560
location: 399676..401853
location: region:399676-401853:1
so has part: feature:399676-401853:1:exon

XP_001218858.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ63
type: GOA
SIO_000068: goa

IPR003959
type: InterPro
SIO_000068: interpro

IPR003960
type: InterPro
SIO_000068: interpro

IPR009010
type: InterPro
SIO_000068: interpro

IPR029067
type: InterPro
SIO_000068: interpro

Q4GZ63
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:399676-401853:1:exon

TB927.1.1560
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1560
old locus tag: Tb927.1.1560
note: Majority of WCS reads call G, One WCS read, TP10C4 and TP28N5 call A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1560
subclass of: SO_0000673
so part of: TB927.1.1560
location: 401085
location: region:401085-401085:1
so has part: feature:401085-401085:1:exon

position:401085:1
position: 401085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:401085-401085:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS calls 10T, Two WCS reads, TP10C4, TP27E7 and TP28N5 call 9 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 402215..402224
location: region:402215-402224:1
so has part: feature:402215-402224:1:region

position:402215:1
position: 402215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402224:1
position: 402224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402215-402224:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP1J20 call A, One WCS read, TP10C4 and TP28N5 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 402663
location: region:402663-402663:1
so has part: feature:402663-402663:1:region

position:402663:1
position: 402663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402663-402663:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS calls 10 T, One WCS read and TP10C4 call 9 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 402870..402879
location: region:402870-402879:1
so has part: feature:402870-402879:1:region

position:402870:1
position: 402870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402879:1
position: 402879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402870-402879:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS calls C, One WCS read and TP10C4 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 402987
location: region:402987-402987:1
so has part: feature:402987-402987:1:region

position:402987:1
position: 402987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402987-402987:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call C, Three WCS reads and TP10C4 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 403226
location: region:403226-403226:1
so has part: feature:403226-403226:1:region

position:403226:1
position: 403226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403226-403226:1:region

TB927.1.1570
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1570
old locus tag: Tb927.1.1570
so part of: sequence
location: <403250..>403615
location: region:403250-403615:1
so has part: feature:403250-403615:1:exon
subclass of: SO_0000010

4357232
type: Gene
SIO_000068: ncbigene

position:403250:1
position: 403250
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:403615:1
position: 403615
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403250-403615:1:exon

TB927.1.1570
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1570
old locus tag: Tb927.1.1570
product: hypothetical protein, unlikely
transcript id: XM_001218858.1
SIO_010081: TB927.1.1570
subclass of: SO_0000673
so part of: TB927.1.1570
location: <403250..>403615
location: region:403250-403615:1
so has part: feature:403250-403615:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:403250-403615:1:exon

TB927.1.1570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1570
old locus tag: Tb927.1.1570
codon start: 1
product: hypothetical protein, unlikely
translation: MFLRLSCSFFFVVKGEKFSFHCECKCAWETDCPKCRINGNRENSPTCALKCYFFFKSKYAKVTLFSRWGVNIFGQILTYIYTHIRGDIDVCMKGRKDYFLHCYHEIQAILVQKPALFPLKK
SIO_010081: TB927.1.1570
subclass of: SO_0000673
so part of: TB927.1.1570
location: 403250..403615
location: region:403250-403615:1
so has part: feature:403250-403615:1:exon

XP_001218859.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ62
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:403250-403615:1:exon

TB927.1.1570
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1570
old locus tag: Tb927.1.1570
note: Majority of WCS and TP29E6 call 10 T, Three WCS reads and TP10C4 call 11 T; type 2 (single nucleotide insertions/deletions)
SIO_010081: TB927.1.1570
subclass of: SO_0000673
so part of: TB927.1.1570
location: 403273..403282
location: region:403273-403282:1
so has part: feature:403273-403282:1:exon

position:403273:1
position: 403273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403282:1
position: 403282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403273-403282:1:exon

TB927.1.1570
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1570
old locus tag: Tb927.1.1570
note: Majority of WCS and TP29E6 call A, Three WCS reads and TP10C4 call G; type 1 (single nucleotide substitutions); mis-sense mutation at 89 in Tb927.1.1570 D -> G
SIO_010081: TB927.1.1570
subclass of: SO_0000673
so part of: TB927.1.1570
location: 403515
location: region:403515-403515:1
so has part: feature:403515-403515:1:exon

position:403515:1
position: 403515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403515-403515:1:exon

TB927.1.1580
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1580
old locus tag: Tb927.1.1580
so part of: sequence
location: <403775..>404680
location: region:403775-404680:1
so has part: feature:403775-404680:1:exon
subclass of: SO_0000010

4357233
type: Gene
SIO_000068: ncbigene

position:403775:1
position: 403775
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:404680:1
position: 404680
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403775-404680:1:exon

TB927.1.1580
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1580
old locus tag: Tb927.1.1580
product: cytochrome c oxidase assembly factor; electron transport protein SCO1/2
transcript id: XM_001218859.1
SIO_010081: TB927.1.1580
subclass of: SO_0000673
so part of: TB927.1.1580
location: <403775..>404680
location: region:403775-404680:1
so has part: feature:403775-404680:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:403775-404680:1:exon

TB927.1.1580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1580
old locus tag: Tb927.1.1580
codon start: 1
product: cytochrome c oxidase assembly factor; electron transport protein SCO1/2
translation: MSLRRHVITRSISVHNRFISSSGEQKTGGSRGGFFSVLRYGPRNRAELFGLCLGCAMCPLSIYLINWCEGCSNRNNNTQPELVLGNETFVTHGVAAPDKGSKYPLGGPFRLRESRTGNYITDKELFQDHWTLLYFGFSKCAEVCPSTLRFITDVMKACDEKLAGDKNLSTEAARLQAVFLSVDSRRDTPEVLEGFVSKYDPRVRGLTGTSKEIEQAARAWRVYYSSIDETDEEKSAREAKGVPMVGADDDTYQLDHSSAIYLVGVDGKLKDFFFKEMGVADAVGRLEVHLQDVYGFKDTRG
SIO_010081: TB927.1.1580
subclass of: SO_0000673
so part of: TB927.1.1580
location: 403775..404680
location: region:403775-404680:1
so has part: feature:403775-404680:1:exon

XP_001218860.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ61
type: GOA
SIO_000068: goa

IPR003782
type: InterPro
SIO_000068: interpro

IPR012336
type: InterPro
SIO_000068: interpro

Q4GZ61
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:403775-404680:1:exon

TB927.1.1580
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1580
old locus tag: Tb927.1.1580
note: Signal anchor predicted for Tb927.1.1580 by SignalP 2.0 HMM (Signal peptide probabilty 0.001, signal anchor probability 0.865) with cleavage site probability 0.000 between residues 64 and 65
SIO_010081: TB927.1.1580
subclass of: SO_0000673
so part of: TB927.1.1580
location: 403775..403964
location: region:403775-403964:1
so has part: feature:403775-403964:1:exon

position:403964:1
position: 403964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:403775-403964:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: telomeric repeat hexamer TTAGGG
so part of: sequence
location: 404744..404749
location: region:404744-404749:1
so has part: feature:404744-404749:1:region

position:404744:1
position: 404744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404749:1
position: 404749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404744-404749:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP1J20 call 10 T, Two WCS reads and TP10C4 call 11 T; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 404795..404804
location: region:404795-404804:1
so has part: feature:404795-404804:1:region

position:404795:1
position: 404795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404804:1
position: 404804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404795-404804:1:region

TB927.1.1590
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1590
old locus tag: Tb927.1.1590
so part of: sequence
location: <404939..>405205
location: region:404939-405205:1
so has part: feature:404939-405205:1:exon
subclass of: SO_0000010

4357234
type: Gene
SIO_000068: ncbigene

position:404939:1
position: 404939
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:405205:1
position: 405205
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404939-405205:1:exon

TB927.1.1590
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1590
old locus tag: Tb927.1.1590
product: hypothetical protein, unlikely
transcript id: XM_001218860.1
SIO_010081: TB927.1.1590
subclass of: SO_0000673
so part of: TB927.1.1590
location: <404939..>405205
location: region:404939-405205:1
so has part: feature:404939-405205:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:404939-405205:1:exon

TB927.1.1590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1590
old locus tag: Tb927.1.1590
note: GPI-Anchor Signal predicted for Tb927.1.1590 by DGPI v2.04, no cleavage site predicted
codon start: 1
product: hypothetical protein, unlikely
translation: MKFLFFSLSFPLFFCMCCFCFSSYYIFCPCVVCEIPLDLEGDSDLLRRCYGWDGRVNGIHDESIMKKEATEGCFFSLFFLICLFSPLE
SIO_010081: TB927.1.1590
subclass of: SO_0000673
so part of: TB927.1.1590
location: 404939..405205
location: region:404939-405205:1
so has part: feature:404939-405205:1:exon

XP_001218861.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ60
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:404939-405205:1:exon

TB927.1.1590
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1590
old locus tag: Tb927.1.1590
note: Signal peptide predicted for Tb927.1.1590 by SignalP 2.0 HMM (Signal peptide probabilty 0.877, signal anchor probability 0.121) with cleavage site probability 0.264 between residues 20 and 21
SIO_010081: TB927.1.1590
subclass of: SO_0000673
so part of: TB927.1.1590
location: 404939..404996
location: region:404939-404996:1
so has part: feature:404939-404996:1:exon

position:404996:1
position: 404996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404939-404996:1:exon

TB927.1.1590
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 185431
locus tag: TB927.1.1590
old locus tag: Tb927.1.1590
note: 1 probable transmembrane helix predicted for Tb927.1.1590 by TMHMM2.0 at aa 5-27
SIO_010081: TB927.1.1590
subclass of: SO_0000673
so part of: TB927.1.1590
location: 404951..405019
location: region:404951-405019:1
so has part: feature:404951-405019:1:exon

position:404951:1
position: 404951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405019:1
position: 405019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404951-405019:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS calls 11 T, TP10C4 calls 8 T; type 3 (insertion/deletion of 3 nucleotides)
so part of: sequence
location: 405325..405335
location: region:405325-405335:1
so has part: feature:405325-405335:1:region

position:405325:1
position: 405325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405335:1
position: 405335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405325-405335:1:region

TB927.1.1600
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
so part of: sequence
location: <405678..>410249
location: region:405678-410249:1
so has part: feature:405678-410249:1:exon
subclass of: SO_0000010

4357235
type: Gene
SIO_000068: ncbigene

position:405678:1
position: 405678
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:410249:1
position: 410249
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405678-410249:1:exon

TB927.1.1600
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
product: hypothetical protein, conserved
transcript id: XM_001218861.1
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: <405678..>410249
location: region:405678-410249:1
so has part: feature:405678-410249:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:405678-410249:1:exon

TB927.1.1600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
codon start: 1
product: hypothetical protein, conserved
translation: MKKTLSCRRRLILGMSIEDAQSKFDSPESRVALRLAHERHNQGVYHELNLAQRLRNRLPSERKYHLVRHTKPSVKGFQAYIKSSPDDYVVKELWYGKKATLPKLAGDVGAAAAITSGQSVVDSSPNVIPSIIQEKGVGGPVPCDPLYNGYSNPSGVGAVVDNQTGPVCGVNSSDECARDDTSAASVEGSSMSSQASVEAYIGPQLGEEMDAYSRHRTIFMAELKRVAKTLSNEAKRQLLIRRSKGAAPSARQMSVVDRLVEEVREAEEKGYTSLSSSSHLLEPLGLSLNVCTKRDKRVLEAFRSPLLCVPAEENYISISLWVAGALIENNELATEFPYYIAKHASPDLDECDVITSPNSVPRASIDVYFSLELYKLQQSIGVDGVLALRRFIGRAMIRQHDPLPTTPSIAFNMRLKQRECGGLCSGESTQIPWLHVIKAKVASISGTVLEVSSDDSPSTTVMREAIGHVWRTWGNLVKDLHVHGDLDYLYVSVRPEVDVQVGMPLLGDSTGGVLNCSKGKVLSTSTSLGNSSQQLLQGQDGQDWKGQNGGSNGANLGRAISGKGGKNGSLWNGFNSRKTRATNVILPTDFVVVECLLEKRGLPHRLVVEDITESLTEMQRQAMEVQRLAVIDEAHQQSQQYVTENEEDESCDEGIAQFPVDVRPVLYAPTITVSHAGVIDSASHSFQRIRIRGSCLAHIEALAKALGSGEHFVEREGIHLYATKTSSQGTSLPQLPPNLHFSRTHADVNEHAATKRLIGHHASSSHAVMEQRAASGYFHPYQTLKPMQYMIADHDEREFWREHFYKLSDITLVFHDRVCAADINNSRQWSSTLKSQLLSIGRQRSGQMGLEDESDDTAVNGPKDEEGDSAGRARKKKPKKGRGKRAAQGDLEDVVSTMSPEKIFEYLCFDMEVTSASYDLRMGDNDGYDYRVKLRRIPQSHFPLVKPAMVSLQKHGFINYFGPQRFSSYTRYNMHPGLHLLKGEFHAAASIIVQQFYMDSDLAAEKRRNGHTIEKMYSSKGAGFRLPDIDRSFGGRRSVTENGSALQSVLSNALQASSLLGLNENSAEMESYSSSPKDQQIMNVTNGASVLDPCGEAFLRVVGPKACSMLVHEFLAFLWNDIVNQRLQRYGTFAILPGDLVRLNPLASPHSNEFGRVVYASKNSIEKGKYTCYDVVLPVPGAGVELPDNHTADLYVVTLKRMGILFNPESKQWDIFRSRSNFGNDGALHDGEAAFASSPYNRFSTSFALMEEELGGETSVMNFAHESQVGEEGDAGGMVTEGVLSDGRGLRRDLRHEGNMGNLLGVNIWCSYRHMLVNPSSQLRWRFQSGRTGDPYQRWAFGVRNTFMGRETNVSSLSGALLDKGTLGRSAEQPQQQLLLLGNGAPGRSGKDSRGGKRRARTLPAAPYWLPEKNNGCLELSFQLPSSVYPSMLLREVTKSDVNSPDVVDLDRPLIDTRAESWNGLTADQQQTYRRYLAKKRQKLFTEAPRAINIALLHQHIFRSGGMRRGLIPSMRGYDNVSK
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 405678..410249
location: region:405678-410249:1
so has part: feature:405678-410249:1:exon

XP_001218862.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ59
type: GOA
SIO_000068: goa

IPR001656
type: InterPro
SIO_000068: interpro

IPR011760
type: InterPro
SIO_000068: interpro

IPR020103
type: InterPro
SIO_000068: interpro

Q4GZ59
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:405678-410249:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: Majority of WCS and TP1J20 call G, Two WCS reads, TP10C4, TP27E7 and TP28N5 call A; type 1 (single nucleotide substitutions); mis-sense mutation at 187 in Tb927.1.1600 E -> K
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 406236
location: region:406236-406236:1
so has part: feature:406236-406236:1:exon

position:406236:1
position: 406236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406236-406236:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: Majority of WCS and TP1J20 call C, Two WCS reads, TP10C4 and TP27E7 call T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 406547
location: region:406547-406547:1
so has part: feature:406547-406547:1:exon

position:406547:1
position: 406547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406547-406547:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: Majority of WCS and TP29E6 call C, Two WCS reads, TP27E7 and TP10C4 call T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 407402
location: region:407402-407402:1
so has part: feature:407402-407402:1:exon

position:407402:1
position: 407402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407402-407402:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: Majority of WCS and TP29E6 call T, Two WCS reads, TP27E7 and TP10C4 call C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 407510
location: region:407510-407510:1
so has part: feature:407510-407510:1:exon

position:407510:1
position: 407510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407510-407510:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: Majority of WCS and TP29E6 call T, Two WCS reads, TP27E7 and TP10C4 call C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 407573
location: region:407573-407573:1
so has part: feature:407573-407573:1:exon

position:407573:1
position: 407573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407573-407573:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: Majority of WCS and TP29E6 call G, One WCS read, TP27E7 and TP10C4 call A; type 1 (single nucleotide substitutions); mis-sense mutation at 660 in Tb927.1.1600 V -> I
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 407655
location: region:407655-407655:1
so has part: feature:407655-407655:1:exon

position:407655:1
position: 407655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407655-407655:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP29E6 call T, TP10C4 calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 748 in Tb927.1.1600 V -> G
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 407920
location: region:407920-407920:1
so has part: feature:407920-407920:1:exon

position:407920:1
position: 407920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407920-407920:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP1J20 call T, TP10C4, TP27E7 and TP28N5 call C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 408593
location: region:408593-408593:1
so has part: feature:408593-408593:1:exon

position:408593:1
position: 408593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408593-408593:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS, TP29E6 and TP1J20 call G, TP10C4 calls A; type 1 (single nucleotide substitutions); mis-sense mutation at 1095 in Tb927.1.1600 G -> R
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 408960
location: region:408960-408960:1
so has part: feature:408960-408960:1:exon

position:408960:1
position: 408960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408960-408960:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS, TP29E6 and TP1J20 call A, TP10C4 and TP28N5 call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 409112
location: region:409112-409112:1
so has part: feature:409112-409112:1:exon

position:409112:1
position: 409112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409112-409112:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP29E6 call T, TP10C4 and TP28N5 call C; type 1 (single nucleotide substitutions); mis-sense mutation at 1303 in Tb927.1.1600 L -> P
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 409585
location: region:409585-409585:1
so has part: feature:409585-409585:1:exon

position:409585:1
position: 409585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409585-409585:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP19E6 call G, TP10C4 calls T; type 1 (single nucleotide substitutions); mis-sense mutation at 1328 in Tb927.1.1600 Q -> H
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 409661
location: region:409661-409661:1
so has part: feature:409661-409661:1:exon

position:409661:1
position: 409661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409661-409661:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP29E6 call T, TP10C4 calls C; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 409667
location: region:409667-409667:1
so has part: feature:409667-409667:1:exon

position:409667:1
position: 409667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409667-409667:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP29E6 call A, TP10C4 and TP27E7 call G; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 410141
location: region:410141-410141:1
so has part: feature:410141-410141:1:exon

position:410141:1
position: 410141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410141-410141:1:exon

TB927.1.1600
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1600
old locus tag: Tb927.1.1600
note: WCS and TP29E6 call T, TP10C4 and TP27E7 call A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1600
subclass of: SO_0000673
so part of: TB927.1.1600
location: 410150
location: region:410150-410150:1
so has part: feature:410150-410150:1:exon

position:410150:1
position: 410150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410150-410150:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call A, One WCS read, TP10C4 and TP27E7 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410294
location: region:410294-410294:1
so has part: feature:410294-410294:1:region

position:410294:1
position: 410294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410294-410294:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call T, One WCS read, TP27E7 and TP10C4 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410334
location: region:410334-410334:1
so has part: feature:410334-410334:1:region

position:410334:1
position: 410334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410334-410334:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of AG in one WCS read, TP10C4 and TP27E7; type 5
so part of: sequence
location: 410347..410348
location: region:410347-410348:1
so has part: feature:410347-410348:1:region

position:410347:1
position: 410347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410348:1
position: 410348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410347-410348:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call A, One WCS read, TP27E7 and TP10C4 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410354
location: region:410354-410354:1
so has part: feature:410354-410354:1:region

position:410354:1
position: 410354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410354-410354:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Deletion of A in one WCS read, TP27E7 and TP10C4; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 410362
location: region:410362-410362:1
so has part: feature:410362-410362:1:region

position:410362:1
position: 410362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410362-410362:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call A, One WCS read, TP27E7 and TP10C4 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410379
location: region:410379-410379:1
so has part: feature:410379-410379:1:region

position:410379:1
position: 410379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410379-410379:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call T, One WCS read, TP27E7 and TP10C4 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410401
location: region:410401-410401:1
so has part: feature:410401-410401:1:region

position:410401:1
position: 410401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410401-410401:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call G, One WCS read, TP27E7 and TP10C4 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410426
location: region:410426-410426:1
so has part: feature:410426-410426:1:region

position:410426:1
position: 410426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410426-410426:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call G, One WCS read, TP27E7 and TP10C4 call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410454
location: region:410454-410454:1
so has part: feature:410454-410454:1:region

position:410454:1
position: 410454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410454-410454:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call 8 G, One WCS read, TP27E7 and TP10C4 call 9 G; type 2 (single nucleotide insertions/deletions)
so part of: sequence
location: 410499..410506
location: region:410499-410506:1
so has part: feature:410499-410506:1:region

position:410499:1
position: 410499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410506:1
position: 410506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410499-410506:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call G, One WCS read, TP27E7 and TP10C4 call T; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410583
location: region:410583-410583:1
so has part: feature:410583-410583:1:region

position:410583:1
position: 410583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410583-410583:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call T, One WCS read, TP27E7 and TP10C4 call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410625
location: region:410625-410625:1
so has part: feature:410625-410625:1:region

position:410625:1
position: 410625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410625-410625:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call C, One WCS read, TP27E7, TP10C4 and TP28N5 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410726
location: region:410726-410726:1
so has part: feature:410726-410726:1:region

position:410726:1
position: 410726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410726-410726:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS and TP29E6 call G, One WCS read, TP27E7, TP10C4 and TP28N5 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 410759
location: region:410759-410759:1
so has part: feature:410759-410759:1:region

position:410759:1
position: 410759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410759-410759:1:region

TB927.1.1610
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1610
old locus tag: Tb927.1.1610
so part of: sequence
location: <411411..>412223
location: region:411411-412223:1
so has part: feature:411411-412223:1:exon
subclass of: SO_0000010

4357236
type: Gene
SIO_000068: ncbigene

position:411411:1
position: 411411
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:412223:1
position: 412223
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411411-412223:1:exon

TB927.1.1610
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1610
old locus tag: Tb927.1.1610
product: hypothetical protein, conserved
transcript id: XM_001218862.1
SIO_010081: TB927.1.1610
subclass of: SO_0000673
so part of: TB927.1.1610
location: <411411..>412223
location: region:411411-412223:1
so has part: feature:411411-412223:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411411-412223:1:exon

TB927.1.1610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1610
old locus tag: Tb927.1.1610
codon start: 1
product: hypothetical protein, conserved
translation: MQRDVYASLIKKRHKQMVPLLIHQVSGDITRENIFDEVFHGYKLRRIVLMTHMAATPATLPRLPRDIIVSDFDKLKAIHQPHFHYKLLPLLCTDFEAFSALQGICASANSPFTIEDRKDPQGLTHRLSNGCSERQALCEFFDPHIAPAEKLVPVFSRKLPISAVVFDGLLLKQNYPKVAALLTVHEAASEKSIIERAIMRDFFVSPLYTKVSGNSDVAQSLRLVHHCTHFMALKRAVGSDAPSRQSLMRLAAEKKLFMYEKIGDEYQFVH
SIO_010081: TB927.1.1610
subclass of: SO_0000673
so part of: TB927.1.1610
location: 411411..412223
location: region:411411-412223:1
so has part: feature:411411-412223:1:exon

XP_001218863.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ58
type: GOA
SIO_000068: goa

Q4GZ58
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:411411-412223:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS calls G, One WCS read, TP10C4 and TP27E7 call A; type 1 (single nucleotide substitutions)
so part of: sequence
location: 412761
location: region:412761-412761:1
so has part: feature:412761-412761:1:region

position:412761:1
position: 412761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412761-412761:1:region

TB927.1.1620
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1620
old locus tag: Tb927.1.1620
so part of: sequence
location: <412960..>415179
location: region:412960-415179:1
so has part: feature:412960-415179:1:exon
subclass of: SO_0000010

4357237
type: Gene
SIO_000068: ncbigene

position:412960:1
position: 412960
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:415179:1
position: 415179
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412960-415179:1:exon

TB927.1.1620
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1620
old locus tag: Tb927.1.1620
product: ATP-dependent DEAD/H RNA helicase, putative
transcript id: XM_001218863.1
SIO_010081: TB927.1.1620
subclass of: SO_0000673
so part of: TB927.1.1620
location: <412960..>415179
location: region:412960-415179:1
so has part: feature:412960-415179:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:412960-415179:1:exon

TB927.1.1620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1620
old locus tag: Tb927.1.1620
codon start: 1
product: ATP-dependent DEAD/H RNA helicase, putative
translation: MLSPWNDCVGDDHQWILKPLQNRLRYERPLPVQQAVVPTVRRALLSGLPMDVCLTAPTGSGKTLCYLLPLLQMITEAKKGTNHTRLLALVLVPTKALGQQVTHELQRLTRGTTITTVSLCDEMSVKEEAAALVRTVRLVGSGTHQTQGHYRNVPYMNIYNGDSVSLPSNAAGVAHNEDESEDGASSSDGGNGEEVGYDSMVDSSLHYYSRADIVISTPQRLLRHLDGTPGFTLLHLRLLVIDEADQVLSGNFANFVAKVVERFEEEQASRVGSTGDRRRLTQLTYSLHKFLCSATLSSHITRISEVRLRNCRHFTLDSFGTEIQREDEGEPLPLPSTDDTGSRKKNKRDQERGNANTKNKRGDDVGKGGEEDSCEDGNEEVKLPLSRQQLVRTSFALPPRLQEHVVFVEDWYRHAVLLKLVRAIVDKQKKAEALVKEHKRREEGLAAQDDESEGTGLGSNGYGTFSRENVRECESTEFRALPHRRRGASKLVGASDPSYPSCDDDAGRRIVIFCRSADEARVMGHFLLSAGVQATEFTTLATESERRRALLKSRPDSCVVASDALMRGVDVPNVGHVIMYNPPETLSQYVHRAGRTARAMRAGHLHLLLQKLGPSGTMKDGEVAMFKAISAAVSRMQPVRYERHFFMFDVAPTQLGKVAIESSPEGGNNGEGRGLVKDKARLLIEEADRYLKETQLRLTGRWVSALESARRGDAVGNKPSSATFGGSRRFISQTKRERG
SIO_010081: TB927.1.1620
subclass of: SO_0000673
so part of: TB927.1.1620
location: 412960..415179
location: region:412960-415179:1
so has part: feature:412960-415179:1:exon

XP_001218864.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ57
type: GOA
SIO_000068: goa

IPR001650
type: InterPro
SIO_000068: interpro

IPR011545
type: InterPro
SIO_000068: interpro

IPR014001
type: InterPro
SIO_000068: interpro

Q4GZ57
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:412960-415179:1:exon

TB927.1.1620
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1620
old locus tag: Tb927.1.1620
note: Majority of WCS calls G, One WCS read, TP10C4 and TP27E7 call A; type 1 (single nucleotide substitutions); mis-sense mutation at 111 in Tb927.1.1620 G -> R
SIO_010081: TB927.1.1620
subclass of: SO_0000673
so part of: TB927.1.1620
location: 413290
location: region:413290-413290:1
so has part: feature:413290-413290:1:exon

position:413290:1
position: 413290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413290-413290:1:exon

TB927.1.1620
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1620
old locus tag: Tb927.1.1620
note: WCS calls A, TP10C4 calls G; type 1 (single nucleotide substitutions); mis-sense mutation at 436 in Tb927.1.1620 K -> E
SIO_010081: TB927.1.1620
subclass of: SO_0000673
so part of: TB927.1.1620
location: 414265
location: region:414265-414265:1
so has part: feature:414265-414265:1:exon

position:414265:1
position: 414265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414265-414265:1:exon

TB927.1.1620
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1620
old locus tag: Tb927.1.1620
note: WCS calls G, TP10C4 and TP27E7 call A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1620
subclass of: SO_0000673
so part of: TB927.1.1620
location: 415128
location: region:415128-415128:1
so has part: feature:415128-415128:1:exon

position:415128:1
position: 415128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415128-415128:1:exon

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: WCS calls G, TP10C4 and TP27E7 call C; type 1 (single nucleotide substitutions)
so part of: sequence
location: 415210
location: region:415210-415210:1
so has part: feature:415210-415210:1:region

position:415210:1
position: 415210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415210-415210:1:region

variation
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
note: Majority of WCS calls T, Three WCS reads, TP10C4, TP27E7 and TP28N5 call G; type 1 (single nucleotide substitutions)
so part of: sequence
location: 415675
location: region:415675-415675:1
so has part: feature:415675-415675:1:region

position:415675:1
position: 415675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415675-415675:1:region

TB927.1.1630
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1630
old locus tag: Tb927.1.1630
so part of: sequence
location: <415685..>416167
location: region:415685-416167:1
so has part: feature:415685-416167:1:exon
subclass of: SO_0000010

4357238
type: Gene
SIO_000068: ncbigene

position:415685:1
position: 415685
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:416167:1
position: 416167
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:415685-416167:1:exon

TB927.1.1630
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1630
old locus tag: Tb927.1.1630
product: hypothetical protein, conserved
transcript id: XM_001218864.1
SIO_010081: TB927.1.1630
subclass of: SO_0000673
so part of: TB927.1.1630
location: <415685..>416167
location: region:415685-416167:1
so has part: feature:415685-416167:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:415685-416167:1:exon

TB927.1.1630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1630
old locus tag: Tb927.1.1630
codon start: 1
product: hypothetical protein, conserved
translation: MGGTKKKATVPIKKESKYKIPSHFDCPFCDAKKSIAVRLKRSDGLASVHCRVCRVGENRHYNFSPLEKPVDVFFRFREELMEKDHELLRAHNVETGAMAARTGLAQLAPKNRQQATLEEDMASAEPSDYDNFLSTVENISRSALLASDIHVDSEYDEPLF
SIO_010081: TB927.1.1630
subclass of: SO_0000673
so part of: TB927.1.1630
location: 415685..416167
location: region:415685-416167:1
so has part: feature:415685-416167:1:exon

XP_001218865.1
type: Protein
SIO_000068: ncbiprotein

IPR007808
type: InterPro
SIO_000068: interpro

Q4GZ56
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:415685-416167:1:exon

TB927.1.1640
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1640
old locus tag: Tb927.1.1640
so part of: sequence
location: <416752..>417804
location: region:416752-417804:1
so has part: feature:416752-417804:1:exon
subclass of: SO_0000010

4357239
type: Gene
SIO_000068: ncbigene

position:416752:1
position: 416752
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:417804:1
position: 417804
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416752-417804:1:exon

TB927.1.1640
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1640
old locus tag: Tb927.1.1640
product: hypothetical protein, conserved
transcript id: XM_001218865.1
SIO_010081: TB927.1.1640
subclass of: SO_0000673
so part of: TB927.1.1640
location: <416752..>417804
location: region:416752-417804:1
so has part: feature:416752-417804:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:416752-417804:1:exon

TB927.1.1640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1640
old locus tag: Tb927.1.1640
codon start: 1
product: hypothetical protein, conserved
translation: MKFLVVDGDWPVTPYTLTRSELVSHSVEEADGGSEGGQLIIHGHTLVALCQQQLHTSVVRVRAAPDLSTLGLTILHESLSDSTGNIRLVTPKSLTRQVFAVDDLLVHGRLIVFTSRWESLASAAIVGVKSDRREEHELTRRTKSRPEETKNSGRGNHDTSVSRPSVFSGRNRTALHKFTCAETYFQSIPPATVHDLDLLNNLIQAGTIRLDPRVEVYLCTVCGFLPRQTFTTSCCGAIMCGACTPLISTSSVMPSVMSERYVCIACKELPFTSHTAHVSRDAEVMKLVRELRVLHHPQLASAASATSSHGMAEKSHASLPFLLHSMGIMPAKRDVGGAAAPVLGSVFPNP
SIO_010081: TB927.1.1640
subclass of: SO_0000673
so part of: TB927.1.1640
location: 416752..417804
location: region:416752-417804:1
so has part: feature:416752-417804:1:exon

XP_001218866.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ55
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:416752-417804:1:exon

TB927.1.1640
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1640
old locus tag: Tb927.1.1640
note: Majority of WCS calls C, One WCS read, TP27E7 and TP10C4 call T; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1640
subclass of: SO_0000673
so part of: TB927.1.1640
location: 417411
location: region:417411-417411:1
so has part: feature:417411-417411:1:exon

position:417411:1
position: 417411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417411-417411:1:exon

TB927.1.1650
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1650
old locus tag: Tb927.1.1650
so part of: sequence
location: <418001..>418510
location: region:418001-418510:1
so has part: feature:418001-418510:1:exon
subclass of: SO_0000010

4357240
type: Gene
SIO_000068: ncbigene

position:418001:1
position: 418001
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:418510:1
position: 418510
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418001-418510:1:exon

TB927.1.1650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1650
old locus tag: Tb927.1.1650
product: hypothetical protein, conserved
transcript id: XM_001218866.1
SIO_010081: TB927.1.1650
subclass of: SO_0000673
so part of: TB927.1.1650
location: <418001..>418510
location: region:418001-418510:1
so has part: feature:418001-418510:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:418001-418510:1:exon

TB927.1.1650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1650
old locus tag: Tb927.1.1650
codon start: 1
product: hypothetical protein, conserved
translation: MWRVKPLVWLAARDVNTLRTVSSLHSRTRQEDVTISGNDKVTRNRERNYAAAPSGCFRFDLPTASLHSELSRGRRYDVPKGKSCSGQWASKGKICTTTNNGRAAVGTGKEPSMGPLPSSRSSGTRFPVDYRRMKESHKVEAGNAVNSTISSSDSRAPSKRINVRVIALE
SIO_010081: TB927.1.1650
subclass of: SO_0000673
so part of: TB927.1.1650
location: 418001..418510
location: region:418001-418510:1
so has part: feature:418001-418510:1:exon

XP_001218867.1
type: Protein
SIO_000068: ncbiprotein

Q4GZ54
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:418001-418510:1:exon

TB927.1.1650
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1650
old locus tag: Tb927.1.1650
note: Majority of WCS and TP1J20 call C, One WCS read and TP10C4 call G; type 1 (single nucleotide substitutions); mis-sense mutation at 53 in Tb927.1.1650 P -> A
SIO_010081: TB927.1.1650
subclass of: SO_0000673
so part of: TB927.1.1650
location: 418157
location: region:418157-418157:1
so has part: feature:418157-418157:1:exon

position:418157:1
position: 418157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418157-418157:1:exon

TB927.1.1650
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1650
old locus tag: Tb927.1.1650
note: WCS calls T, TP10C4 and TP27E7 call A; type 1 (single nucleotide substitutions)
SIO_010081: TB927.1.1650
subclass of: SO_0000673
so part of: TB927.1.1650
location: 418432
location: region:418432-418432:1
so has part: feature:418432-418432:1:exon

position:418432:1
position: 418432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418432-418432:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 185431
note: inverted telomeric repeat hexamer CCCTAA
so part of: sequence
location: 418737..418742
location: region:418737-418742:1
so has part: feature:418737-418742:1:region

position:418737:1
position: 418737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:418742:1
position: 418742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418737-418742:1:region

TB927.1.1660
type: Gene
subclass of: SO_0000704
RO_0002162: 185431
locus tag: TB927.1.1660
old locus tag: Tb927.1.1660
so part of: sequence
location: <418829..>419716
location: region:418829-419716:1
so has part: feature:418829-419716:1:exon
subclass of: SO_0000010

4357241
type: Gene
SIO_000068: ncbigene

position:418829:1
position: 418829
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:419716:1
position: 419716
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418829-419716:1:exon

TB927.1.1660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 185431
locus tag: TB927.1.1660
old locus tag: Tb927.1.1660
product: hypothetical protein, conserved
transcript id: XM_001218867.1
SIO_010081: TB927.1.1660
subclass of: SO_0000673
so part of: TB927.1.1660
location: <418829..>419716
location: region:418829-419716:1
so has part: feature:418829-419716:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:418829-419716:1:exon

TB927.1.1660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 185431
locus tag: TB927.1.1660
old locus tag: Tb927.1.1660
codon start: 1
product: hypothetical protein, conserved
translation: MHNSVPASNTCSPFREETVSKRGKRSRGTGGDDKITRGTCSQPFSVITLPPGKLLEWLVCSPCRVYDVNLPRSRNNDNNISSLQCAVLPNFFVEYGGRSYSCVAKVCKPQLRKVLLRALAAVRQEMGSVDDIPHDSLLVVAVSPINAFSSECIHDASRTAMPRAREGCKIVGLCVARELSAPHRMHCESNWSHEKSEASGVGAAVQEGLGDCWEEDATRVGGTNNVRKAFCGVQLVWVADCYRRHGVAKVLVDTARRHISYGFEVPVERVAFSEPTSLGKLFAKSYSGRPDFLIF
SIO_010081: TB927.1.1660
subclass of: SO_0000673
so part of: TB927.1.1660
location: 418829..419716
location: region:418829-419716:1
so has part: feature:418829-419716:1:exon

XP_001218868.1
type: Protein
SIO_000068: ncbiprotein

IPR028009
type: InterPro
SIO_000068: interpro

Q4GZ53
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:418829-419716:1:exon

TB927.1.1660
type: Variation
subclass of: SO_0000109
RO_0002162: 185431
locus tag: TB927.1.1660
old locus tag: Tb927.1.1660
note: Majority of WCS calls C, One WCS read and TP10C4 call G; type 1 (single nucleotide substitutions); mis-sense mutation at 182 in Tb927.1.1660 P -> A
SIO_010081: TB927.1.1660
subclass of: SO_0000673
so part of: TB927.1.1660
location: 419372
location: region:419372-419372:1
so has part: feature:419372-419372:1:exon

position:419372:1
position: 419372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition