Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae; Butyrivibrio.
Genomic architecture of three newly isolated unclassified Butyrivibrio species elucidate their potential role in the rumen ecosystem
Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Appl Environ Microbiol 86 (1), e01993-19 (2019)
Butyrivibrio hungatei MB2003 Competes Effectively for Soluble Sugars Released by Butyrivibrio proteoclasticus B316T during Growth on Xylan or Pectin
Appl Environ Microbiol 85 (3), e02056-18 (2019)
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003
Submitted (25-OCT-2016) Rumen Microbiology, Animal Nutrition and Health, AgResearch Limited, Grasslands Research Centre, Tennent Drive, Private Bag 11008, Palmerston North, Manawatu 4442, New Zealand
REFSEQ INFORMATION: The reference sequence is identical to\nCP017833.1.\nBacteria and source DNA available from AgResearch, Rumen\nMicrobiology, Animal Nutrition and Health, Grasslands Research\nCentre, Tennent Drive, Private Bag 11008, Palmerston North, New\nZealand.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. version 2.3\nGenome Coverage :: 234.0x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 01:38:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,094\nCDSs (total) :: 3,030\nGenes (coding) :: 3,015\nCDSs (with protein) :: 3,015\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 5 of 15\nPseudo Genes (incomplete) :: 10 of 15\nPseudo Genes (internal stop) :: 0 of 15\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF041497.1
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein