Butyrivibrio hungatei strain MB2003 chromosome II, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae; Butyrivibrio.
Genomic architecture of three newly isolated unclassified Butyrivibrio species elucidate their potential role in the rumen ecosystem
Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
Appl Environ Microbiol 86 (1), e01993-19 (2019)
Butyrivibrio hungatei MB2003 Competes Effectively for Soluble Sugars Released by Butyrivibrio proteoclasticus B316T during Growth on Xylan or Pectin
Appl Environ Microbiol 85 (3), e02056-18 (2019)
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003
Submitted (25-OCT-2016) Rumen Microbiology, Animal Nutrition and Health, AgResearch Limited, Grasslands Research Centre, Tennent Drive, Private Bag 11008, Palmerston North, Manawatu 4442, New Zealand
REFSEQ INFORMATION: The reference sequence is identical to\nCP017830.1.\nBacteria and source DNA available from AgResearch, Rumen\nMicrobiology, Animal Nutrition and Health, Grasslands Research\nCentre, Tennent Drive, Private Bag 11008, Palmerston North, New\nZealand.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. version 2.3\nGenome Coverage :: 234.0x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 01:38:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,094\nCDSs (total) :: 3,030\nGenes (coding) :: 3,015\nCDSs (with protein) :: 3,015\nGenes (RNA) :: 64\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 5 of 15\nPseudo Genes (incomplete) :: 10 of 15\nPseudo Genes (internal stop) :: 0 of 15\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF025636.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013282476.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013282477.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_013658665.1
COORDINATES: protein motif:HMM:NF012424.2
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013280467.1
COORDINATES: similar to AA sequence:RefSeq:WP_013280260.1
COORDINATES: similar to AA sequence:RefSeq:WP_013280458.1
COORDINATES: similar to AA sequence:RefSeq:WP_019160783.1
COORDINATES: similar to AA sequence:RefSeq:WP_013282355.1
COORDINATES: similar to AA sequence:RefSeq:WP_013282571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015519927.1
GO:0008959 - phosphate acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013282352.1
COORDINATES: similar to AA sequence:RefSeq:WP_013282350.1
COORDINATES: similar to AA sequence:RefSeq:WP_008373299.1
COORDINATES: similar to AA sequence:RefSeq:WP_015552264.1
nickel pincer cofactor biosynthesis protein LarC
COORDINATES: similar to AA sequence:RefSeq:WP_013282347.1
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_015530657.1
COORDINATES: similar to AA sequence:RefSeq:WP_013282344.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_013283081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018595022.1
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_015957622.1
GO:0018580 - nitronate monooxygenase activity [Evidence IEA]
enoyl-[acyl-carrier-protein] reductase FabK
COORDINATES: similar to AA sequence:RefSeq:WP_012740551.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013280659.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_013280660.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011098456.1
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013280662.1
COORDINATES: similar to AA sequence:RefSeq:WP_013280663.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014356291.1
acetyl-CoA carboxylase carboxyltransferase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_015522659.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_015549138.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421474.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018593963.1
COORDINATES: protein motif:HMM:TIGR04350.1
COORDINATES: similar to AA sequence:RefSeq:WP_013279701.1
COORDINATES: similar to AA sequence:RefSeq:WP_013279541.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_008401715.1
COORDINATES: similar to AA sequence:RefSeq:WP_009533683.1
COORDINATES: similar to AA sequence:RefSeq:WP_013280163.1
COORDINATES: similar to AA sequence:RefSeq:WP_013282376.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009532432.1
COORDINATES: similar to AA sequence:RefSeq:WP_009532433.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012743577.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007886740.1
COORDINATES: protein motif:HMM:NF025601.2
COORDINATES: similar to AA sequence:RefSeq:WP_013282551.1
COORDINATES: similar to AA sequence:RefSeq:WP_015566900.1
COORDINATES: protein motif:HMM:NF025150.2
COORDINATES: similar to AA sequence:RefSeq:WP_015549967.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016281737.1
COORDINATES: similar to AA sequence:RefSeq:WP_015519412.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_007867069.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013282324.1
COORDINATES: similar to AA sequence:RefSeq:WP_013281513.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024698.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: similar to AA sequence:RefSeq:WP_004603715.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013281504.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_013282470.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013282471.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013281315.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590819.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013282474.1