Companilactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence.
type: Entry
definition: Companilactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence.
sequence version: NZ_CP019324.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP019324.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04939523
keyword: RefSeq
source: Companilactobacillus allii
organism: Companilactobacillus allii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Companilactobacillus.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP019324.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. HGAP3\nGenome Coverage :: 333.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:19:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,568\nCDSs (total) :: 2,494\nGenes (coding) :: 2,469\nCDSs (with protein) :: 2,469\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 9 of 25\nPseudo Genes (incomplete) :: 12 of 25\nPseudo Genes (internal stop) :: 6 of 25\nPseudo Genes (multiple problems) :: 2 of 25\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 28011
topology: circular
so has quality: SO_0000988
location: 1..28011
location: region:1-28011:1
RO_0002162: 1847728

NZ_CP019324
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04939523
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Jung, M.Y.
author: Lee, S.H.
journal: Submitted (09-DEC-2016) microbiology and fnctionality research group, World institute of kimchi, 86 kimch-ro, Nam-gu, Gwanju 61755, republic of Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28011:1
position: 28011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28011:1:source
so part of: sequence
organism: Companilactobacillus allii
mol type: genomic DNA
strain: WiKim39
isolation source: Kimchi
type material: type strain of Lactobacillus allii
plasmid: pWIKIM01
country: South Korea: Gwangju
collection date: 2015-11

1847728
type: Taxonomy
SIO_000068: taxonomy

BTM29_RS12510
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12510
old locus tag: BTM29_12515
so part of: sequence
location: join(27399..28011,1..494)
location: region:1-28011:1
so has part: feature:27399-28011:1:exon
so has part: feature:1-494:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:27399-28011:1:exon

position:27399:1
position: 27399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-494:1:exon

position:494:1
position: 494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BTM29_RS12510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12510
old locus tag: BTM29_12515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014567979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MTKSTDFNYYDANSVYGALFFQFPKVLMYGEQYRHLSNAAKLAYMVLKDRLEYSLRNNWVDEDGNIYFVYTNAELMELFNSSEKTVIKIKKELEGLNLLRQKRMGFQPKAGKQLPNRLYLAGLDVQANDVYLRGEQSETPETLAARRTVNSTVQHDTVETLAARRTVNSTVQHDTVEKDAQTLAARRTVNSTVNLYKDSKNIDTNRYNIDTQKLDFSTAHFSPAEIQKQNQDLVHHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHQDIGVIIPLYDEELKPLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYAAKHPEEQNTDNERSWN
SIO_010081: BTM29_RS12510
subclass of: SO_0000673
so part of: BTM29_RS12510
location: join(27399..28011,1..494)
location: region:1-28011:1
so has part: feature:27399-28011:1:exon
so has part: feature:1-494:1:exon

WP_076619033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27399-28011:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-494:1:exon

BTM29_RS12515
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12515
old locus tag: BTM29_12520
so part of: sequence
location: 899..1180
location: region:899-1180:1
so has part: feature:899-1180:1:exon
subclass of: SO_0000010

position:899:1
position: 899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1180:1
position: 1180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:899-1180:1:exon

BTM29_RS12515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12515
old locus tag: BTM29_12520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVADAALPFKPALSEAERANLSLLKATKETPVTEFKDAKEVADWLNDPDED
SIO_010081: BTM29_RS12515
subclass of: SO_0000673
so part of: BTM29_RS12515
location: 899..1180
location: region:899-1180:1
so has part: feature:899-1180:1:exon

WP_010014831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:899-1180:1:exon

BTM29_RS12520
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12520
old locus tag: BTM29_12525
so part of: sequence
location: 1227..1412
location: region:1227-1412:1
so has part: feature:1227-1412:1:exon
subclass of: SO_0000010

position:1227:1
position: 1227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1412:1
position: 1412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1227-1412:1:exon

BTM29_RS12520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12520
old locus tag: BTM29_12525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
SIO_010081: BTM29_RS12520
subclass of: SO_0000673
so part of: BTM29_RS12520
location: 1227..1412
location: region:1227-1412:1
so has part: feature:1227-1412:1:exon

WP_010620892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1227-1412:1:exon

BTM29_RS12525
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12525
old locus tag: BTM29_12530
so part of: sequence
location: 1409..2089
location: region:1409-2089:1
so has part: feature:1409-2089:1:exon
subclass of: SO_0000010

position:1409:1
position: 1409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2089:1
position: 2089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1409-2089:1:exon

BTM29_RS12525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12525
old locus tag: BTM29_12530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zeta toxin family protein
translation: MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKAMKEEIKQLHYALDHQQSIHVETTLAGRGKAQLNLIDKAHKNGFEVTLLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTTVYAREKGQVFKNDLRHFPWINQNITYPEKVKKQLQNFADQNPEVKPKNDPENKNDRPSY
SIO_010081: BTM29_RS12525
subclass of: SO_0000673
so part of: BTM29_RS12525
location: 1409..2089
location: region:1409-2089:1
so has part: feature:1409-2089:1:exon

WP_076619036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1409-2089:1:exon

BTM29_RS12530
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12530
old locus tag: BTM29_12535
so part of: sequence
location: complement(2079..2357)
location: region:2079-2357:-1
so has part: feature:2079-2357:-1:exon
subclass of: SO_0000010

position:2079:-1
position: 2079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2357:-1
position: 2357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2079-2357:-1:exon

BTM29_RS12530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12530
old locus tag: BTM29_12535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQANNLSVEQTEELLKIFADYVNAHKPNKLKNDQPNN
SIO_010081: BTM29_RS12530
subclass of: SO_0000673
so part of: BTM29_RS12530
location: complement(2079..2357)
location: region:2079-2357:-1
so has part: feature:2079-2357:-1:exon

WP_068479060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2079-2357:-1:exon

BTM29_RS12535
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12535
old locus tag: BTM29_12540
so part of: sequence
location: complement(2380..2607)
location: region:2380-2607:-1
so has part: feature:2380-2607:-1:exon
subclass of: SO_0000010

position:2380:-1
position: 2380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2607:-1
position: 2607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2380-2607:-1:exon

BTM29_RS12535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12535
old locus tag: BTM29_12540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGGIVMSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
SIO_010081: BTM29_RS12535
subclass of: SO_0000673
so part of: BTM29_RS12535
location: complement(2380..2607)
location: region:2380-2607:-1
so has part: feature:2380-2607:-1:exon

WP_003555660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2380-2607:-1:exon

BTM29_RS12540
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12540
old locus tag: BTM29_12545
so part of: sequence
location: 2861..4924
location: region:2861-4924:1
so has part: feature:2861-4924:1:exon
subclass of: SO_0000010

position:2861:1
position: 2861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4924:1
position: 4924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2861-4924:1:exon

BTM29_RS12540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12540
old locus tag: BTM29_12545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWNEVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIPDRISEKSFIEEGIDDTPTQHEGINSKRHERKEFNQQVKDYRKTKASYKNNQEKVINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLLMQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYHEVLKRAFPNGDLDDLSLVKQEQAYTAVMYYDPTLKPLKVETMEQWQANPPQVFSTQEHQLGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFFGECKVDPTIKNSQIEKIQKQLKEQQDKDDQYRKANIGHYQPLNYKPVSPDYYLKTAFSNAIMTALYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL
SIO_010081: BTM29_RS12540
subclass of: SO_0000673
so part of: BTM29_RS12540
location: 2861..4924
location: region:2861-4924:1
so has part: feature:2861-4924:1:exon

WP_076619041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2861-4924:1:exon

BTM29_RS12545
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12545
old locus tag: BTM29_12550
so part of: sequence
location: 4899..6557
location: region:4899-6557:1
so has part: feature:4899-6557:1:exon
subclass of: SO_0000010

position:4899:1
position: 4899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6557:1
position: 6557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4899-6557:1:exon

BTM29_RS12545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12545
old locus tag: BTM29_12550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003600531.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IA DNA topoisomerase
translation: MKMGACTCNHKISDWLIGMNGSPLYTLLLRQNGVRGVYSIGRVQTPTLYMVYQRDQAIKNFKPEPYFELNAEILANQQKFVAKLDPYQRFKDETGLMTFMQAKHVQKGSQGGLIKDVQKQAKKRASPQLFSLSSLQSAMNKRYHASASQTLAAIQSLYEAKLLSYPRTDCAYITDEEFEYLVANLTKYLGLVSKQVAVTNTTPNKRYVNGKKVEEHYAIIMTKVVPTKEKLASLPKLQQQVYDLVLKTTLAMFADPYEYEETTIITQVGAANFKATGKVPTKQGWQALFDDHKADQQETATLPLVHQGDQVQANLQTPQKETTPPVPFTEGTLITAMKTAGKTLDDEEAQAILKDVQGIGTSATRANVLEVLKKRGYLFTEKNKLHVSEAGTTLCKAVELEPLLTSPEMTAKWEQALQQISTEERTPDNFLSQIKKFVAKLIADVPEQLTGSSAIKQQIDHQQQTQKAAEVFLETPQATVLNKQKFYIVKPKQGEDFTLPKKWSSKTLGKTAIKALVTKGETSKLKGFKNKKGKPFDAKLKLDGHKLSFDFD
SIO_010081: BTM29_RS12545
subclass of: SO_0000673
so part of: BTM29_RS12545
location: 4899..6557
location: region:4899-6557:1
so has part: feature:4899-6557:1:exon

WP_225972256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4899-6557:1:exon

BTM29_RS12550
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12550
old locus tag: BTM29_12555
so part of: sequence
location: 6680..6895
location: region:6680-6895:1
so has part: feature:6680-6895:1:exon
subclass of: SO_0000010

position:6680:1
position: 6680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6895:1
position: 6895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6680-6895:1:exon

BTM29_RS12550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12550
old locus tag: BTM29_12555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474742.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNELAVIGSELPVLQAKEPYKYLKEITGNGAYYQVAWQKLSDGYVALYGTTSIQIRSLPTLNDIFEDEEG
SIO_010081: BTM29_RS12550
subclass of: SO_0000673
so part of: BTM29_RS12550
location: 6680..6895
location: region:6680-6895:1
so has part: feature:6680-6895:1:exon

WP_027823051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6680-6895:1:exon

BTM29_RS12555
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12555
old locus tag: BTM29_12560
pseudo: true
so part of: sequence
location: 6899..>7872
location: region:6899-7872:1
so has part: feature:6899-7872:1:exon
subclass of: SO_0000010

position:6899:1
position: 6899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7872:1
position: 7872
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6899-7872:1:exon

BTM29_RS12555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12555
old locus tag: BTM29_12560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: BTM29_RS12555
subclass of: SO_0000673
so part of: BTM29_RS12555
location: 6899..>7872
location: region:6899-7872:1
so has part: feature:6899-7872:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6899-7872:1:exon

BTM29_RS12910
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12910
pseudo: true
so part of: sequence
location: <7855..8714
location: region:7855-8714:1
so has part: feature:7855-8714:1:exon
subclass of: SO_0000010

position:7855:1
position: 7855
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8714:1
position: 8714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7855-8714:1:exon

BTM29_RS12910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016366139.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: FliK family flagellar hook-length control protein
SIO_010081: BTM29_RS12910
subclass of: SO_0000673
so part of: BTM29_RS12910
location: <7855..8714
location: region:7855-8714:1
so has part: feature:7855-8714:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7855-8714:1:exon

BTM29_RS12560
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12560
old locus tag: BTM29_12565
so part of: sequence
location: complement(8875..10722)
location: region:8875-10722:-1
so has part: feature:8875-10722:-1:exon
subclass of: SO_0000010

position:8875:-1
position: 8875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10722:-1
position: 10722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8875-10722:-1:exon

BTM29_RS12560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12560
old locus tag: BTM29_12565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003585978.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MKKNWQLMMVLAVSAIALVFAFGLKQPLIAQGLITVMGSIIALIMFWGMVKTIRSGNFGVDLLAITAVVATLAVGQYWAAMIVLLMLTGGDALESYAATKASSELKQLLENAPTTAHRMVDGHVEDVEVEAVQVGETILVKPQEVVPVDGTVLAGESLVDEASLTGESKPVAKNAGSDIMSGTVNGDAALTVKVTQRAEDSQYQGIIKLVKESEARPAHFVRMADRYAVPFTLIAYVIAGLGWFFSGDPVRFAQVLVVASPCPLILAAPIAMVSGMSRNSRNGIIVKSGTTLEKLSDAKTFAFDKTGTVTRGILKVATILPQAGFSQDQLLKLAASAEGQSTHILARSLTDAVPTADRLPATDVSETTSFGVNATVDGRKVKVGKAEFAGTKATVDTTAVYVNVDGQYAGAITFSDQIRPEAKETMTKLHELNDAKLIMISGDQQSIADKVAAQVGIDQVYAEQLPQQKIEVLDNVPKDGRPVVMVGDGVNDAPSLAIADVGIAMGAHGATAASESADAVVLRDDLAKVAAATLIAKETMVIAKQAVLIGIAICTGLMLIASFGVIPTIIGAMLQEVVDTVTILYALRARNGLHRQALVDPVRATAEREQIQQIN
SIO_010081: BTM29_RS12560
subclass of: SO_0000673
so part of: BTM29_RS12560
location: complement(8875..10722)
location: region:8875-10722:-1
so has part: feature:8875-10722:-1:exon

WP_003577000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8875-10722:-1:exon

BTM29_RS12565
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12565
old locus tag: BTM29_12570
so part of: sequence
location: 11040..11300
location: region:11040-11300:1
so has part: feature:11040-11300:1:exon
subclass of: SO_0000010

position:11040:1
position: 11040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11300:1
position: 11300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11040-11300:1:exon

BTM29_RS12565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12565
old locus tag: BTM29_12570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010277795.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MSIRYSQDFKDSLVKLHQEGRSLESLAEEFGPSKDSIAIWVKQATPIMIKGQSKTLKDVKQLEKRLAILEEENEILKRAAILLAKK
SIO_010081: BTM29_RS12565
subclass of: SO_0000673
so part of: BTM29_RS12565
location: 11040..11300
location: region:11040-11300:1
so has part: feature:11040-11300:1:exon

WP_045353638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11040-11300:1:exon

BTM29_RS12570
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12570
old locus tag: BTM29_12575
so part of: sequence
location: 11357..12115
location: region:11357-12115:1
so has part: feature:11357-12115:1:exon
subclass of: SO_0000010

position:11357:1
position: 11357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12115:1
position: 12115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11357-12115:1:exon

BTM29_RS12570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12570
old locus tag: BTM29_12575
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MRILSALKIKSSTYYNWRHWQPSQQEKRRESLKPYILDVWKTFKFYGYRRIAAYSQLNNDCPKISEYMTLKLMRELGIRSRMQKRYRKPKTVVTVDQKPNLIRHLHDLSGVWQTDITYIQLTNHRWVYLATVLDPEKRKVLGYKIGDTMTAELATSALQMALDKHRKPLIIHSDMGSQYTSAEFNIKCQNYGLKHSYSLKGHPYDNGRMEAFHSILKREEVYLKAYETLTQVQAAIGWYINFYNRNRISNVA
SIO_010081: BTM29_RS12570
subclass of: SO_0000673
so part of: BTM29_RS12570
location: 11357..12115
location: region:11357-12115:1
so has part: feature:11357-12115:1:exon

WP_157886458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11357-12115:1:exon

BTM29_RS12985
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12985
pseudo: true
so part of: sequence
location: complement(<12160..>12291)
location: region:12160-12291:-1
so has part: feature:12160-12291:-1:exon
subclass of: SO_0000010

position:12160:-1
position: 12160
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:12291:-1
position: 12291
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12160-12291:-1:exon

BTM29_RS12985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003331415.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21 family transposase
SIO_010081: BTM29_RS12985
subclass of: SO_0000673
so part of: BTM29_RS12985
location: complement(<12160..>12291)
location: region:12160-12291:-1
so has part: feature:12160-12291:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12160-12291:-1:exon

BTM29_RS12990
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12990
so part of: sequence
location: 12262..12522
location: region:12262-12522:1
so has part: feature:12262-12522:1:exon
subclass of: SO_0000010

position:12262:1
position: 12262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12522:1
position: 12522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12262-12522:1:exon

BTM29_RS12990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003627867.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIAGILTELLRTCLVSAESGMTNSSVGFPQFYQIQQILDRFLGLKNKLNDLHHEISNRTQKQLKAFAKQNPEIKQPDSEPDQSLKR
SIO_010081: BTM29_RS12990
subclass of: SO_0000673
so part of: BTM29_RS12990
location: 12262..12522
location: region:12262-12522:1
so has part: feature:12262-12522:1:exon

WP_045353634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12262-12522:1:exon

BTM29_RS13005
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS13005
so part of: sequence
location: complement(12689..12742)
location: region:12689-12742:-1
so has part: feature:12689-12742:-1:exon
subclass of: SO_0000010

position:12689:-1
position: 12689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12742:-1
position: 12742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12689-12742:-1:exon

BTM29_RS13005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS13005
inference: COORDINATES: protein motif:HMM:NF028245.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNAGFRYFYRGLNRINC
SIO_010081: BTM29_RS13005
subclass of: SO_0000673
so part of: BTM29_RS13005
location: complement(12689..12742)
location: region:12689-12742:-1
so has part: feature:12689-12742:-1:exon

WP_230633414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12689-12742:-1:exon

BTM29_RS12590
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12590
old locus tag: BTM29_12595
so part of: sequence
location: 13305..14104
location: region:13305-14104:1
so has part: feature:13305-14104:1:exon
subclass of: SO_0000010

position:13305:1
position: 13305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14104:1
position: 14104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13305-14104:1:exon

BTM29_RS12590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12590
old locus tag: BTM29_12595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MQHFSHHYQSDISRQQFDLIRQDLEASRKRTHPKHIDPYDIFCAMLYVLKNGCTWRDLPADFPKWSTVYYYWMNWSKAPTPDKPALLTQVLKKLSLNRRLRQGRSARTSFVILDAQSIKNTATAENKGYDGGKKISGIKRHLAVDINGFPQAIHITRANITDRDGAIALITLNLEQFKLVRTMMVDSGYTGQNFANEISSLTSAKVIVVKRNELHQFSVIPQRWLIERSFSWLGNYHRLWRNCERKLNTSLMMVSLAFIRLLLKRY
SIO_010081: BTM29_RS12590
subclass of: SO_0000673
so part of: BTM29_RS12590
location: join(13305..13593,13593..14104)
location: region:13305-14104:1
so has part: feature:13305-13593:1:exon
so has part: feature:13593-14104:1:exon

WP_120270481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13305-13593:1:exon

position:13593:1
position: 13593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13593-14104:1:exon

BTM29_RS12595
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12595
old locus tag: BTM29_12600
so part of: sequence
location: 14238..14765
location: region:14238-14765:1
so has part: feature:14238-14765:1:exon
subclass of: SO_0000010

position:14238:1
position: 14238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14765:1
position: 14765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14238-14765:1:exon

BTM29_RS12595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12595
old locus tag: BTM29_12600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVTDKKFYLYRKLLPYIIRVKLRLCKDSNSKTTHTTRSWTYRLFLLFIDKIKSKNYKKQYEDKDLYPYLQMVNIQNGDEIAATGFIPIKSHEMRTIVIPKGRFLDAVKNRLTSNYKALKRFVNKKPVYIYFIYQTMSGTVKEFVVETDYQDSLGKDLDMEYLTKILAVQDKYKTK
SIO_010081: BTM29_RS12595
subclass of: SO_0000673
so part of: BTM29_RS12595
location: 14238..14765
location: region:14238-14765:1
so has part: feature:14238-14765:1:exon

WP_084988350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14238-14765:1:exon

BTM29_RS12600
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12600
old locus tag: BTM29_12605
so part of: sequence
location: 14874..15458
location: region:14874-15458:1
so has part: feature:14874-15458:1:exon
subclass of: SO_0000010

position:14874:1
position: 14874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15458:1
position: 15458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14874-15458:1:exon

BTM29_RS12600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12600
old locus tag: BTM29_12605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKIGYARVSSKEQHLDRQLAALKGVDKLFTDKLSGANTNRPELQKMLAYIREGDIVLVTELDRLGRNNHDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYTQDDPRLQHAFKLYQTGMSDVDVARNTGIKRTTFIRYRKKFNIQR
SIO_010081: BTM29_RS12600
subclass of: SO_0000673
so part of: BTM29_RS12600
location: 14874..15458
location: region:14874-15458:1
so has part: feature:14874-15458:1:exon

WP_076619047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14874-15458:1:exon

BTM29_RS12605
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12605
old locus tag: BTM29_12610
so part of: sequence
location: 15721..16746
location: region:15721-16746:1
so has part: feature:15721-16746:1:exon
subclass of: SO_0000010

position:15721:1
position: 15721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16746:1
position: 16746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15721-16746:1:exon

BTM29_RS12605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12605
old locus tag: BTM29_12610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012695418.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MTRIKNIISNQYHQLNLAERGRIEALRGLDWSIRRIAKALHRNPSTISRELRRGTTTQINANTRIFEQSYLAETGEAVYRKHRLNSCYRGLFDHCQTFCNALVTALKARPRMHSVDTFVHQFKTNYPGVVCPSTPTVYRYIDDQRLTIRNSDLPAKLRRRVKRPGTKHHRINKKNLGHSIEERPTVVQARQELGHWEGDLVKGKRVESEPALMTLTERVSRLEIIVKLPNYHADTCLKALQNTLYDYGTEYFKTITFDNGAEFSSLSQVAGTDIYFAHPYSPWERGTNENTNGLLREFFPKGRSLVLASLIDIQLAQDTLNNRLRRSLNYRCPADLMPELA
SIO_010081: BTM29_RS12605
subclass of: SO_0000673
so part of: BTM29_RS12605
location: 15721..16746
location: region:15721-16746:1
so has part: feature:15721-16746:1:exon

WP_043023465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15721-16746:1:exon

BTM29_RS12610
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12610
old locus tag: BTM29_12615
so part of: sequence
location: 17034..18239
location: region:17034-18239:1
so has part: feature:17034-18239:1:exon
subclass of: SO_0000010

position:17034:1
position: 17034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18239:1
position: 18239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17034-18239:1:exon

BTM29_RS12610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12610
old locus tag: BTM29_12615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825823.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSDLDQTNSYRYVIVGGGVVAGYAIKGIRQEDSEGEILIISQEADVPYERPALSKKLWLDDEFTEENIQIGAENYPNVTFKFKTTVTAINRQDKVITLADSEQIKYEQLLLATGGEPRQIQGPSDPHVLVFRQWSDYRKLRKFSGPNKRVVIIGGGYVGTELASSLTQNETEVTMIFPEKALGEGKFPESIRTEYEATFKRNGVTLMSGQFVQSYQRQGDHLALLTKDGTVIAADTIIVGLGVTPRISLAEDSCLDLADGGVKVNEYLNTSDPAIWSAGDIASYPDHILGRQRIEHVDHARLSGELVGRNMAGAHMSYQHTPYFYSMIFDISWQAIGNIDPKLQLIFDRRTHGSLVYFIDTDKLVGVLVWNVKVNLDDVRALLANAPATDDLVGSIREKKA
SIO_010081: BTM29_RS12610
subclass of: SO_0000673
so part of: BTM29_RS12610
location: 17034..18239
location: region:17034-18239:1
so has part: feature:17034-18239:1:exon

WP_020090536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17034-18239:1:exon

BTM29_RS12995
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12995
so part of: sequence
location: complement(18399..18617)
location: region:18399-18617:-1
so has part: feature:18399-18617:-1:exon
subclass of: SO_0000010

position:18399:-1
position: 18399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18617:-1
position: 18617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18399-18617:-1:exon

BTM29_RS12995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12995
inference: COORDINATES: protein motif:HMM:NF025063.2
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MSRKGNCHDNAPIESFFRLYKTECLAGFPPCKGLAELKAVSLEYVNWFNYRRISSKTKGMSPCEYREHTLAT
SIO_010081: BTM29_RS12995
subclass of: SO_0000673
so part of: BTM29_RS12995
location: complement(18399..18617)
location: region:18399-18617:-1
so has part: feature:18399-18617:-1:exon

WP_225972255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18399-18617:-1:exon

BTM29_RS12620
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12620
old locus tag: BTM29_12625
so part of: sequence
location: complement(19308..19763)
location: region:19308-19763:-1
so has part: feature:19308-19763:-1:exon
subclass of: SO_0000010

position:19308:-1
position: 19308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19763:-1
position: 19763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19308-19763:-1:exon

BTM29_RS12620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12620
old locus tag: BTM29_12625
inference: COORDINATES: protein motif:HMM:NF013677.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MNEHLSDGTSRAELARNHQLPKRQVNRWLQQYHLNGIETLKRYKTRRKFSAEFKWYVINYYQTHDESLAEVAGKYNVLACQISVWRKTLIRDGYSSLEPHPKGRSTKTKRSKKQIRQLEKQSEIERLRSEIAQKNQEFYDTKLENDILKNQ
SIO_010081: BTM29_RS12620
subclass of: SO_0000673
so part of: BTM29_RS12620
location: complement(19308..19763)
location: region:19308-19763:-1
so has part: feature:19308-19763:-1:exon

WP_236906188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19308-19763:-1:exon

BTM29_RS13010
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS13010
old locus tag: BTM29_12630
so part of: sequence
location: complement(19782..20267)
location: region:19782-20267:-1
so has part: feature:19782-20267:-1:exon
subclass of: SO_0000010

position:19782:-1
position: 19782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20267:-1
position: 20267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19782-20267:-1:exon

BTM29_RS13010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS13010
old locus tag: BTM29_12630
inference: COORDINATES: protein motif:HMM:NF033516.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQRRCSPRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSAIMDLHSRRIIGYSFSKKMDTDLVLR
SIO_010081: BTM29_RS13010
subclass of: SO_0000673
so part of: BTM29_RS13010
location: complement(19782..20267)
location: region:19782-20267:-1
so has part: feature:19782-20267:-1:exon

WP_231952027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19782-20267:-1:exon

BTM29_RS13015
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS13015
so part of: sequence
location: complement(20447..20572)
location: region:20447-20572:-1
so has part: feature:20447-20572:-1:exon
subclass of: SO_0000010

position:20447:-1
position: 20447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20572:-1
position: 20572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20447-20572:-1:exon

BTM29_RS13015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS13015
inference: COORDINATES: protein motif:HMM:NF024776.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWI
SIO_010081: BTM29_RS13015
subclass of: SO_0000673
so part of: BTM29_RS13015
location: complement(20447..20572)
location: region:20447-20572:-1
so has part: feature:20447-20572:-1:exon

WP_016374491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20447-20572:-1:exon

BTM29_RS12635
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12635
old locus tag: BTM29_12640
so part of: sequence
location: 20707..22035
location: region:20707-22035:1
so has part: feature:20707-22035:1:exon
subclass of: SO_0000010

position:20707:1
position: 20707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22035:1
position: 22035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20707-22035:1:exon

BTM29_RS12635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12635
old locus tag: BTM29_12640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003591692.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - monoatomic cation transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside-pentoside-hexuronide (GPH):cation symporter
translation: MKSTTKWVTRWPERISYGLSDAADNLVFQMMTTYLLFFYTDVYGLTPSAVAILFVVARVADVVESFVIGIMIDHTHSRFGKSRPFFLWYSLPYVIFAVLTFVTPNFSYNGKLIWAYVTYLGLGFLYTAVNLPITSILPTMSQNTRELTLLGVIRQFFGSSVQIVVAVFTLPLVAFFGHGNQQKGFLGTIIVFSLISFLLIINTFVHVRERFANPEIAHQPLTTVLKMLKHNQPWIVMSIVILMYWLVTAIKNQTTIYYFKYTVGNENLVPLANSFTLAALIGVLLIIRITEVRSKKQTMLRGILMALVGQAVIAIGVYTKILWFLFGGVLINSIGNGIIIGLVSIMIADTIRYGASMGIQAEGVLASTDDFGVNVGLGVGGLITAGLFHFSGYVANRTQNAATLTMIDLNYVWIPLVIYVGMYFVLRLYDEGRIERAIEARK
SIO_010081: BTM29_RS12635
subclass of: SO_0000673
so part of: BTM29_RS12635
location: 20707..22035
location: region:20707-22035:1
so has part: feature:20707-22035:1:exon

WP_076619063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20707-22035:1:exon

BTM29_RS12640
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12640
old locus tag: BTM29_12645
pseudo: true
so part of: sequence
location: 22175..>22603
location: region:22175-22603:1
so has part: feature:22175-22603:1:exon
subclass of: SO_0000010

position:22175:1
position: 22175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22603:1
position: 22603
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22175-22603:1:exon

BTM29_RS12640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12640
old locus tag: BTM29_12645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014569099.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: BTM29_RS12640
subclass of: SO_0000673
so part of: BTM29_RS12640
location: 22175..>22603
location: region:22175-22603:1
so has part: feature:22175-22603:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22175-22603:1:exon

BTM29_RS12645
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12645
old locus tag: BTM29_12650
so part of: sequence
location: 22694..24058
location: region:22694-24058:1
so has part: feature:22694-24058:1:exon
subclass of: SO_0000010

position:22694:1
position: 22694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24058:1
position: 24058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22694-24058:1:exon

BTM29_RS12645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12645
old locus tag: BTM29_12650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020807835.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MDKRKIVIVGASHGGHESAIELLDKYNDVDVTVYEAGDFISFMSCGMQLYLENKVTAEDDVRNFAPEDVEKKGGHVYANHEVTAIHPEHKTVTVKDLTNNSEEEVQYDKLILSSGVTPKFLPVPGNDLKNIYLMRGRDWASKLMSAVNNPAIKNVAIVGAGYIGTEASEVFAKAGKHVTLMDMIDRPLGTYLNPELLDVLEPTFKKNMDLKMGVKIEGFNGNEKVESVKTDQGDIPADLVVVSAGVTPNTDWIKGTVDLDQRGWIKTDPYLRTNVKDVYAIGDAILPLSIPAGKPMPIALATTARREAQYVVDHIFEDKPDRAFKGVIGASALSVFDYHFATAGLNKFSAAKNKLDYQTSFYEDHMRPAYVPEADNPKVYVSLTFNPYTHQILGGAVLSKYDITAQGNVLALAISHKMRLEDLAEQDFFFQPGFDRQWSLLNLAAQHALGMARF
SIO_010081: BTM29_RS12645
subclass of: SO_0000673
so part of: BTM29_RS12645
location: 22694..24058
location: region:22694-24058:1
so has part: feature:22694-24058:1:exon

WP_068281289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22694-24058:1:exon

BTM29_RS12655
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12655
old locus tag: BTM29_12660
so part of: sequence
location: complement(24289..25527)
location: region:24289-25527:-1
so has part: feature:24289-25527:-1:exon
subclass of: SO_0000010

position:24289:-1
position: 24289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25527:-1
position: 25527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24289-25527:-1:exon

BTM29_RS12655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12655
old locus tag: BTM29_12660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3 family transposase
translation: MSQLDNTLKLLGITDTNIQVFGTREEFNGRGSGRKKYLVIQAELTYTLRRCPSCGYNTLHPNGHKLTHVHISGPMDRPVILELNKQRWRCSNCHSTCTATTPVVSTNHAIGHGLATHVLKLASKSLPAKTIASLTGISTNSVQRILTANIHPHASRRLPINLCFDEFRSTHGSMSFICIDADTHKSVKVLSDRLNRTIKQFFLSQYSTAERAAVQRVIMDMNASYQAFVHELFPNAELIIDRFHIIQLMGRTMDTIRTQFLKQLDKHSREYKVLKSLWRLFHKATPDAQKSRYLFGLNEYSTEQNAIDIGTDTFPAFKTAYETYIDLHDALMGRHADELKNIITNYQPNGTPLDTAIHTLRKNLNGVINAAKSSYSNGPIEGINRKIKELKRACYGFSNQANMFTRVYQLIA
SIO_010081: BTM29_RS12655
subclass of: SO_0000673
so part of: BTM29_RS12655
location: complement(24289..25527)
location: region:24289-25527:-1
so has part: feature:24289-25527:-1:exon

WP_076619050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24289-25527:-1:exon

BTM29_RS12660
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12660
old locus tag: BTM29_12665
so part of: sequence
location: complement(25814..26029)
location: region:25814-26029:-1
so has part: feature:25814-26029:-1:exon
subclass of: SO_0000010

position:25814:-1
position: 25814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26029:-1
position: 26029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25814-26029:-1:exon

BTM29_RS12660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12660
old locus tag: BTM29_12665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003649837.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEDFLNKVSKKASEQLKNLKSPYQFETERTKTVQLRMSTYKEVKRIAFENDEKIVDVLEKIIREGLAKRK
SIO_010081: BTM29_RS12660
subclass of: SO_0000673
so part of: BTM29_RS12660
location: complement(25814..26029)
location: region:25814-26029:-1
so has part: feature:25814-26029:-1:exon

WP_003649837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25814-26029:-1:exon

BTM29_RS12665
type: Gene
subclass of: SO_0000704
RO_0002162: 1847728
locus tag: BTM29_RS12665
old locus tag: BTM29_12670
so part of: sequence
location: complement(26036..26821)
location: region:26036-26821:-1
so has part: feature:26036-26821:-1:exon
subclass of: SO_0000010

position:26036:-1
position: 26036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26821:-1
position: 26821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26036-26821:-1:exon

BTM29_RS12665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1847728
locus tag: BTM29_RS12665
old locus tag: BTM29_12670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003649838.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNGKTLLNFNFKGGVGKTTLTVMETYLLGQEGKKVLLIDFDPQGNATEIMKETYKADLKPELSLYEGLLGGNLSKSIVSVTNQIDMIPTDWTLSLWIGAVEKVSRVKRNILLPQMLSKLKQNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQSYTSSLKTATHLGELREQYNGSFQLVGAILYLMKPRAKVDTEISAQAKDFFGEGVFSNSIRTQERVKTFANEGIRNKDHWDKRAIQMYQMVLNEQILRIQQLEE
SIO_010081: BTM29_RS12665
subclass of: SO_0000673
so part of: BTM29_RS12665
location: complement(26036..26821)
location: region:26036-26821:-1
so has part: feature:26036-26821:-1:exon

WP_017866972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26036-26821:-1:exon