Paracoccus seriniphilus strain DSM 14827 plasmid p12374, complete sequence.
type: Entry
definition: Paracoccus seriniphilus strain DSM 14827 plasmid p12374, complete sequence.
sequence version: NZ_CP067133.1
sequence date: 2023-02-10
sequence: sequence
division: CON
label: NZ_CP067133.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17208906
keyword: RefSeq
source: Paracoccus seriniphilus
organism: Paracoccus seriniphilus
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP067133.1.\nBacteria and source DNA available from Prof. Dr. Thorsten\nBrinkhoff, ICMB, University Oldenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-OCT-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 206.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/09/2023 17:31:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,084\nCDSs (total) :: 4,023\nGenes (coding) :: 3,920\nCDSs (with protein) :: 3,920\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 33 of 103\nPseudo Genes (incomplete) :: 90 of 103\nPseudo Genes (internal stop) :: 19 of 103\nPseudo Genes (multiple problems) :: 35 of 103\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12374
topology: circular
so has quality: SO_0000988
location: 1..12374
location: region:1-12374:1
RO_0002162: 184748

NZ_CP067133
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17208906
type: BioSample
SIO_000068: biosample

1
title: Biogeographic distribution of Paracoccus
author: Hollensteiner, J.
author: Leineberger, J.
author: Brinkhoff, T.
author: Daniel, R.
journal: Unpublished

2
title: Direct Submission
author: Hollensteiner, J.
author: Leineberger, J.
author: Brinkhoff, T.
author: Daniel, R.
journal: Submitted (05-JAN-2021) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12374:1
position: 12374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12374:1:source
so part of: sequence
organism: Paracoccus seriniphilus
mol type: genomic DNA
strain: DSM 14827
isolation source: washing water of Bugula plumosa
type material: type strain of Paracoccus seriniphilus
plasmid: p12374
country: Germany:Helgoland

184748
type: Taxonomy
SIO_000068: taxonomy

JHW44_RS20355
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20355
old locus tag: JHW44_20290
so part of: sequence
location: 1..1035
location: region:1-1035:1
so has part: feature:1-1035:1:exon
subclass of: SO_0000010

position:1035:1
position: 1035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1035:1:exon

JHW44_RS20355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20355
old locus tag: JHW44_20290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007331490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVTENTNSLTPLLPDRHPQHDLFICDVADAVLKDVMQHMEHPFYSLSKKPETTVKRYRNGENWLEITPSVKGLATIYDKDILIYCISQIMAKLKLGEQVSPRVRINSRELLIFTNRGTSGREYQSLLDALDRLEGTRIRTNIVSGDEEQIDGFGLIDASSIRRKHGLDGRLLWCEVKLSDWVFNAIRKEEVLTLHRDYFRLRKPIERRVYEIARKHCGQQRTWRITLRKLLLKTGSQSPEKRFRQMIKQLVQHDHLPDYNVTFDETADMIIFTNRGTMAPAPMIEGRVPPLTPDTYERARQVAPGWDVHYLEREWRDWIFEPPRDADGAFVGFCRKWFEKRGRP
SIO_010081: JHW44_RS20355
subclass of: SO_0000673
so part of: JHW44_RS20355
location: 1..1035
location: region:1-1035:1
so has part: feature:1-1035:1:exon

WP_272850376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1035:1:exon

JHW44_RS20360
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20360
old locus tag: JHW44_20295
so part of: sequence
location: 1149..1817
location: region:1149-1817:1
so has part: feature:1149-1817:1:exon
subclass of: SO_0000010

position:1149:1
position: 1149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1817:1
position: 1817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1149-1817:1:exon

JHW44_RS20360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20360
old locus tag: JHW44_20295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655537.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVIVMASPKGGVGKSTCAVLLASEFARMGAEVTVLDCDPNKSLTRWASHGTPKGVTLLSDIGRSEIVPTIRSADGDGRIVIVDLEGVASQLVSRAISQADLVIVPMQPTALDAEIGSEALALIREEEEALGRKIRHAVVLTKTSAAVKSRVQKELEEQLRGAGIDVIEPSLVARAAFSEIFAYGGDLTAMMQDPEMVTGGKVDKAITNAQSFTEAVYERLK
SIO_010081: JHW44_RS20360
subclass of: SO_0000673
so part of: JHW44_RS20360
location: 1149..1817
location: region:1149-1817:1
so has part: feature:1149-1817:1:exon

WP_089346126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1149-1817:1:exon

JHW44_RS20365
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20365
old locus tag: JHW44_20300
so part of: sequence
location: complement(2151..3245)
location: region:2151-3245:-1
so has part: feature:2151-3245:-1:exon
subclass of: SO_0000010

position:2151:-1
position: 2151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3245:-1
position: 3245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2151-3245:-1:exon

JHW44_RS20365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20365
old locus tag: JHW44_20300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDTLVWEFDGRFDRLYIHFDVSDHFLKLDTFIKTAESARKVIDALDETFFNGSLEYELIVLPPAKGTFLSKLAIWISGGTTAVFGFLNTDVGSAYVEGLTGRTPAEWAQSFGEDHRARIDAFHVETETSENDETGLDVTEGPSEALPISADEACKEAAQIVVAMARGVLEKSPDEIQKVGMEVGALPDAVDARADFYAACIEDRDVKRVGFTPDDDFPIPRNSFPKRAQKPARKPKGKEPPELAVSIESIYVTSPNWDKEDQKTRQWKGKDQIRRDCYFVIEDAEFWHKVTHKALHVEVLDNLKVQWAFQNIDGRPKNRRVLRVLEFNGDKLADPLPPAAVRAILGQYSEYEASIGPRTLFDQ
SIO_010081: JHW44_RS20365
subclass of: SO_0000673
so part of: JHW44_RS20365
location: complement(2151..3245)
location: region:2151-3245:-1
so has part: feature:2151-3245:-1:exon

WP_143811516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2151-3245:-1:exon

JHW44_RS20370
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20370
old locus tag: JHW44_20305
so part of: sequence
location: 3613..4182
location: region:3613-4182:1
so has part: feature:3613-4182:1:exon
subclass of: SO_0000010

position:3613:1
position: 3613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4182:1
position: 4182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3613-4182:1:exon

JHW44_RS20370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20370
old locus tag: JHW44_20305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009827349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTRTGDILGYARVSTADQDLSGQKDRLLQHGAIRVFEDVISGKTFNRPGLAALLDQARPNDTLAVIRLDRLGRSLKELLEIVDDLKAREINLISLEERIDTTSAAGELVFHVFGAIAHFERRLISERTKDGLINARKHGRTPGRPSLQPETISALQDLVSTGKSVAQAAKHLGIGRSTAYKVIRNSNPP
SIO_010081: JHW44_RS20370
subclass of: SO_0000673
so part of: JHW44_RS20370
location: 3613..4182
location: region:3613-4182:1
so has part: feature:3613-4182:1:exon

WP_089346129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3613-4182:1:exon

JHW44_RS20375
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20375
old locus tag: JHW44_20310
so part of: sequence
location: complement(4300..4662)
location: region:4300-4662:-1
so has part: feature:4300-4662:-1:exon
subclass of: SO_0000010

position:4300:-1
position: 4300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4662:-1
position: 4662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4300-4662:-1:exon

JHW44_RS20375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20375
old locus tag: JHW44_20310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDFVASVQYNDFKGTVAADRSDTESMADYLVGAGLATDDERVIGYRISFNGNHGKEYEPGVLVYLQKGRYDDPEKVVRAIDIEMTGSKFFSFFKRFSLVLMQDGLDLSNITVDGPHYDD
SIO_010081: JHW44_RS20375
subclass of: SO_0000673
so part of: JHW44_RS20375
location: complement(4300..4662)
location: region:4300-4662:-1
so has part: feature:4300-4662:-1:exon

WP_089346130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4300-4662:-1:exon

JHW44_RS20380
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20380
old locus tag: JHW44_20315
so part of: sequence
location: complement(4776..4979)
location: region:4776-4979:-1
so has part: feature:4776-4979:-1:exon
subclass of: SO_0000010

position:4776:-1
position: 4776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4979:-1
position: 4979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4776-4979:-1:exon

JHW44_RS20380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20380
old locus tag: JHW44_20315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPTHLQMSMKTQPEIDGTFLVSHNSRRALRVGMETFALITCEAKGDGERLLEDQIREQVAQRDRSL
SIO_010081: JHW44_RS20380
subclass of: SO_0000673
so part of: JHW44_RS20380
location: complement(4776..4979)
location: region:4776-4979:-1
so has part: feature:4776-4979:-1:exon

WP_179217816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4776-4979:-1:exon

JHW44_RS20385
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20385
old locus tag: JHW44_20320
so part of: sequence
location: complement(5478..6266)
location: region:5478-6266:-1
so has part: feature:5478-6266:-1:exon
subclass of: SO_0000010

position:5478:-1
position: 5478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6266:-1
position: 6266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5478-6266:-1:exon

JHW44_RS20385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20385
old locus tag: JHW44_20320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009056960.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: endonuclease
translation: MAKEPNRYGALIEKIFFDRYEEGAAALEFTREDIEDAAAALNIRLPKNLGDVLYSFRFRVALPEPIVATQDEGREWVIELAGRAQYRFRLVKANRIVPRDDLVTISIPDATPELIRAYALDDEQALLAIVRYNRLIDTFLGLTTYSLQNHLRTTVRGIGQIEIDELYVGLDKRGCHYVIPVQAKGGKDQIGIVQTTQDIRFVEQRFPDMQCRAISAQFMSDQVVALFELTLQDDEIRVVEERHYKLVPASDLDPNAIRAYRT
SIO_010081: JHW44_RS20385
subclass of: SO_0000673
so part of: JHW44_RS20385
location: complement(5478..6266)
location: region:5478-6266:-1
so has part: feature:5478-6266:-1:exon

WP_089346131.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5478-6266:-1:exon

JHW44_RS20390
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20390
old locus tag: JHW44_20325
so part of: sequence
location: complement(6259..7584)
location: region:6259-7584:-1
so has part: feature:6259-7584:-1:exon
subclass of: SO_0000010

position:6259:-1
position: 6259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7584:-1
position: 7584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6259-7584:-1:exon

JHW44_RS20390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20390
old locus tag: JHW44_20325
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013831785.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MRPVGIDLFAGAGGLSLGFEQAGFDVRAAVEIDPVHCAVHEFNFPNTAVLPHSVEHLNGDDIRRAAGLGDAKVDCVFGGAPCQGFSLIGHRVLDDPRNRLVLDFVRIVRELDATMFVFENVKGLTVGKHRKFLQELETAFNTAGYDVRLPWKVLNAAHYGVPQSRERFILMGAKKGHPLPDYPAPQTNISGKPVKFPELPFGPSCEEAIGDLPDADSYRTLHASDAVPTSRFGEPSAYAAEMRCLGNDSWHYGHVRDWDPAVLTSSARTEHTDISRRRFAATEPGTVEPISRFFKLAPGGVSNTLRAGTDGARGAFTSPRPIHYRYQRCITVREMARLHGFPDWFRFHVTKWHGARQIGNAVPPPLARAIAEQIIAALGVKPTRPSAPIALGDTALLTGDMTDAAAYFGVPAPSGRRDRKSGARKRRQEDIEAELQQAANG
SIO_010081: JHW44_RS20390
subclass of: SO_0000673
so part of: JHW44_RS20390
location: complement(6259..7584)
location: region:6259-7584:-1
so has part: feature:6259-7584:-1:exon

WP_089346132.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6259-7584:-1:exon

JHW44_RS20395
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20395
old locus tag: JHW44_20330
so part of: sequence
location: complement(7605..8063)
location: region:7605-8063:-1
so has part: feature:7605-8063:-1:exon
subclass of: SO_0000010

position:7605:-1
position: 7605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8063:-1
position: 8063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7605-8063:-1:exon

JHW44_RS20395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20395
old locus tag: JHW44_20330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013269445.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: very short patch repair endonuclease
translation: MDTRSPQQRRRIIQSVKQKGTTSELVVRRLLHGAGYRYRLHRKGLPGRPDIVFGKRRKVILVHGCFWHAHGCSKGKAPKSKLDYWGPKLAQNVERDAKNVRDLVNAGWQVLTVWECETRDPARLLLVLRDLWVNKENDRHIETSWLECRIEN
SIO_010081: JHW44_RS20395
subclass of: SO_0000673
so part of: JHW44_RS20395
location: complement(7605..8063)
location: region:7605-8063:-1
so has part: feature:7605-8063:-1:exon

WP_089346133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7605-8063:-1:exon

JHW44_RS20400
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20400
old locus tag: JHW44_20335
so part of: sequence
location: complement(8237..8494)
location: region:8237-8494:-1
so has part: feature:8237-8494:-1:exon
subclass of: SO_0000010

position:8237:-1
position: 8237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8494:-1
position: 8494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8237-8494:-1:exon

JHW44_RS20400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20400
old locus tag: JHW44_20335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007120686.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTKTIRSTGHVALCEALIDARKAAGLTQAGMAERLKCHQSLVARIESGERRIDVVELVVLARAIGVVPSVILEQVVDATEPDHRI
SIO_010081: JHW44_RS20400
subclass of: SO_0000673
so part of: JHW44_RS20400
location: complement(8237..8494)
location: region:8237-8494:-1
so has part: feature:8237-8494:-1:exon

WP_089346134.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8237-8494:-1:exon

JHW44_RS20405
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20405
old locus tag: JHW44_20340
so part of: sequence
location: 8598..9152
location: region:8598-9152:1
so has part: feature:8598-9152:1:exon
subclass of: SO_0000010

position:8598:1
position: 8598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9152:1
position: 9152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8598-9152:1:exon

JHW44_RS20405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20405
old locus tag: JHW44_20340
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQPLQHSMILTKLTRTGQALMQLDSRGYVDIETARHLVAAGLAAPERIRVEIRHLPSREFEGIGLTSEGSAAVKNLVRQIAPISGLSDSRSFTTGPELSDSERVVTCGYLGWLGEDALSQLDRRFAWGWCPEMPREPTQVFEVPLPMLKTSRRKIARRLTAKIGPVDPDFDQKGFMDALWGDG
SIO_010081: JHW44_RS20405
subclass of: SO_0000673
so part of: JHW44_RS20405
location: 8598..9152
location: region:8598-9152:1
so has part: feature:8598-9152:1:exon

WP_089346135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8598-9152:1:exon

JHW44_RS20410
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20410
old locus tag: JHW44_20345
so part of: sequence
location: 9168..9446
location: region:9168-9446:1
so has part: feature:9168-9446:1:exon
subclass of: SO_0000010

position:9168:1
position: 9168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9446:1
position: 9446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9168-9446:1:exon

JHW44_RS20410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20410
old locus tag: JHW44_20345
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPREPTEKPKAAEASEEPKAAAPGLAEGAALQSKAARYRRPGGIAKAKAQTALPLPEGGKVDSDASLDDAVAASQMISKAHEHAMKTLKQAS
SIO_010081: JHW44_RS20410
subclass of: SO_0000673
so part of: JHW44_RS20410
location: 9168..9446
location: region:9168-9446:1
so has part: feature:9168-9446:1:exon

WP_089346136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9168-9446:1:exon

JHW44_RS20415
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20415
old locus tag: JHW44_20350
so part of: sequence
location: complement(9515..10159)
location: region:9515-10159:-1
so has part: feature:9515-10159:-1:exon
subclass of: SO_0000010

position:9515:-1
position: 9515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10159:-1
position: 10159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9515-10159:-1:exon

JHW44_RS20415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20415
old locus tag: JHW44_20350
inference: COORDINATES: protein motif:HMM:NF014045.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NYN domain-containing protein
translation: MTSPLPPVRVRIFVDFWNFQLSLNSMEAAAGRPSFQLDWNGVAGACCDTVNALIKPVSGVAYEGLHVYSSYTDGKAADMKHKNWVETWLDARPGVVATCVKRSQKKSPPKCPACHAEATNCVACGGDMRGMEEKGVDTRIVSDMMSLAWNGAYDVAVLVTADRDFIPVAQELQDRGIKVIHGKIGKSGMDLAKHCWVSFDLYAERTKFERKAKK
SIO_010081: JHW44_RS20415
subclass of: SO_0000673
so part of: JHW44_RS20415
location: complement(9515..10159)
location: region:9515-10159:-1
so has part: feature:9515-10159:-1:exon

WP_179217817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9515-10159:-1:exon

JHW44_RS20420
type: Gene
subclass of: SO_0000704
RO_0002162: 184748
locus tag: JHW44_RS20420
old locus tag: JHW44_20355
so part of: sequence
location: 10606..12150
location: region:10606-12150:1
so has part: feature:10606-12150:1:exon
subclass of: SO_0000010

position:10606:1
position: 10606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12150:1
position: 12150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10606-12150:1:exon

JHW44_RS20420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 184748
locus tag: JHW44_RS20420
old locus tag: JHW44_20355
inference: COORDINATES: protein motif:HMM:NF013258.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MSAEPHKLLDEGWSKVRGSMQGLHGEGKSFGIMRTAKIKTLGNMGASLQHSFRERETPNADPARTSDNTILVGGDNSKDVLAAWKDRAPEKIRKNAVHGLEYFIGGSPAKMKAMTREEQDTYFRDALGWIENRHGKENVLSAMIHRDETTPHMTVMTIPLDDRGKLNCRSFVGNKKALSDLQTDFAEKVSEKHGLRRGIKGSTARHERVQRVYGAYMSGEDAVALPERVRGSLLRGGKESDADWHARATEAATDALRGFQMKMREEKLDMDAKLNTAQSMIQSLQSLQQSYKTQLDAARETLSRLVSSLELADKGAEANAALEAYADLEGKILNGDLGVLKDAAGSPARIDKIVDIYDRVIPEGTAMTEEQARFDRALDLTLDAMADGRVVKRKDPVRIAIEARALPCVQKALVHLAQDRVNPPFTSRDERLAFQAEIEGALSEEQLVVLKQGDETVLEDILGDRLSQPQQLSLALAYFDHADVDIDAGVRRGVIERLSDAEDGPKYQELGLRH
SIO_010081: JHW44_RS20420
subclass of: SO_0000673
so part of: JHW44_RS20420
location: 10606..12150
location: region:10606-12150:1
so has part: feature:10606-12150:1:exon

WP_179217818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10606-12150:1:exon