Paracoccus seriniphilus strain DSM 14827 plasmid p420573, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Biogeographic distribution of Paracoccus
Submitted (05-JAN-2021) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP067132.1.\nBacteria and source DNA available from Prof. Dr. Thorsten\nBrinkhoff, ICMB, University Oldenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-OCT-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 206.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/09/2023 17:31:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,084\nCDSs (total) :: 4,023\nGenes (coding) :: 3,920\nCDSs (with protein) :: 3,920\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 33 of 103\nPseudo Genes (incomplete) :: 90 of 103\nPseudo Genes (internal stop) :: 19 of 103\nPseudo Genes (multiple problems) :: 35 of 103\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013961665.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007815281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815279.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013961662.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011811535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815273.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815271.1
COORDINATES: similar to AA sequence:RefSeq:WP_013961658.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567610.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007798944.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178093.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798938.1
COORDINATES: similar to AA sequence:RefSeq:WP_005620937.1
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_007607018.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018063946.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_015497515.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016486306.1
COORDINATES: similar to AA sequence:RefSeq:WP_008197016.1
COORDINATES: similar to AA sequence:RefSeq:WP_009758698.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018700369.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046349.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199951.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008193920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015502077.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008887766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564683.1
COORDINATES: similar to AA sequence:RefSeq:WP_008597143.1
COORDINATES: similar to AA sequence:RefSeq:WP_018698650.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199169.1
COORDINATES: similar to AA sequence:RefSeq:WP_007565220.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565865.1
putative sulfate exporter family transporter
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_020040442.1
COORDINATES: protein motif:HMM:NF015297.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012352697.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010104251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007089384.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_016914518.1
COORDINATES: similar to AA sequence:RefSeq:WP_013897044.1
COORDINATES: similar to AA sequence:RefSeq:WP_018181820.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877591.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724704.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008261529.1
COORDINATES: similar to AA sequence:RefSeq:WP_009605420.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013775.2
aminoglycoside phosphotransferase family protein
COORDINATES: protein motif:HMM:NF012742.2
COORDINATES: similar to AA sequence:RefSeq:WP_019402437.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824395.1
COORDINATES: similar to AA sequence:RefSeq:WP_018690458.1
COORDINATES: similar to AA sequence:RefSeq:WP_008036942.1
COORDINATES: similar to AA sequence:RefSeq:WP_007106950.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007254643.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927443.1
COORDINATES: similar to AA sequence:RefSeq:WP_009506500.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_011750914.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955043.1
COORDINATES: protein motif:HMM:TIGR02971.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008548899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014108319.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF013677.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009817807.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018301224.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760274.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018301222.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632208.1
COORDINATES: similar to AA sequence:RefSeq:WP_018301220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018013279.1
GO:0005507 - copper ion binding [Evidence IEA]
GO:0055070 - copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018301218.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632212.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007877647.1
COORDINATES: similar to AA sequence:RefSeq:WP_011808974.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
class II D-tagatose-bisphosphate aldolase, non-catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007767947.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: similar to AA sequence:RefSeq:WP_018301213.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_019614669.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013960172.1
COORDINATES: similar to AA sequence:RefSeq:WP_011568501.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012180060.1
COORDINATES: similar to AA sequence:RefSeq:WP_007760991.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009827761.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465139.1
COORDINATES: similar to AA sequence:RefSeq:WP_007811353.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011569865.1
COORDINATES: protein motif:HMM:NF014073.2
COORDINATES: similar to AA sequence:RefSeq:WP_020383402.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013396632.1
COORDINATES: similar to AA sequence:RefSeq:WP_008236448.1
COORDINATES: similar to AA sequence:RefSeq:WP_008236446.1
COORDINATES: similar to AA sequence:RefSeq:WP_015494621.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651538.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_012332529.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008962094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967539.1
COORDINATES: similar to AA sequence:RefSeq:WP_006076100.1
COORDINATES: protein motif:HMM:NF020650.2
COORDINATES: similar to AA sequence:RefSeq:WP_019195367.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_019963842.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019963841.1
COORDINATES: similar to AA sequence:RefSeq:WP_006070324.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006251128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013653931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007711842.1
COORDINATES: similar to AA sequence:RefSeq:WP_008194693.1
COORDINATES: similar to AA sequence:RefSeq:WP_009287125.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009825825.1
COORDINATES: similar to AA sequence:RefSeq:WP_018701277.1
TetR/AcrR family transcriptional regulator
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015500456.1
YkoF family thiamine/hydroxymethylpyrimidine-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013368487.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368486.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368485.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890455.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093169.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890453.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890452.1
COORDINATES: similar to AA sequence:RefSeq:WP_020811801.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012178141.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_010392581.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005982681.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020186293.1
COORDINATES: similar to AA sequence:RefSeq:WP_020186292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438307.1
COORDINATES: protein motif:HMM:NF012447.2
COORDINATES: protein motif:HMM:NF019292.2
COORDINATES: protein motif:HMM:NF019491.2
COORDINATES: protein motif:HMM:NF012703.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: similar to AA sequence:RefSeq:WP_013074960.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_012092529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012090888.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762642.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007839308.1
glutathione ABC transporter permease GsiC
COORDINATES: similar to AA sequence:RefSeq:WP_012090885.1
glutathione ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012090884.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018426735.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471014.1
COORDINATES: similar to AA sequence:RefSeq:WP_017276068.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013670.2
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_010930619.1
COORDINATES: similar to AA sequence:RefSeq:WP_009460211.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_005848388.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF028479.2
COORDINATES: similar to AA sequence:RefSeq:WP_007880689.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689311.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018689312.1
COORDINATES: similar to AA sequence:RefSeq:WP_005463700.1
GO:0016872 - intramolecular lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008523994.1
COORDINATES: similar to AA sequence:RefSeq:WP_020813258.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290187.1
COORDINATES: similar to AA sequence:RefSeq:WP_018690313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018690312.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011338476.1
COORDINATES: protein motif:HMM:NF037026.2
COORDINATES: similar to AA sequence:RefSeq:WP_011649364.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533554.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011751176.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878146.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812187.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751179.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755405.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751182.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019402344.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010504964.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006938047.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751184.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751187.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751188.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649388.1
COORDINATES: similar to AA sequence:RefSeq:WP_005862448.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009571955.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571957.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_009573508.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_009519099.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005979547.1
bifunctional protein tyrosine phosphatase family protein/NAD(P)/FAD-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011750791.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
COORDINATES: protein motif:HMM:NF018884.2
COORDINATES: similar to AA sequence:RefSeq:WP_020043278.1
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_020043281.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954942.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043283.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499054.1
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:TIGR00229.1
PAS domain-containing hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007795867.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504623.1
COORDINATES: similar to AA sequence:RefSeq:WP_005981473.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011567089.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179179.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179178.1
COORDINATES: similar to AA sequence:RefSeq:WP_011252923.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009175299.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020041010.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611590.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_040604073.1
IS21-like element ISPkr1 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611519.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014879309.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_020043624.1
COORDINATES: similar to AA sequence:RefSeq:WP_060835708.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842194.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020442.2
COORDINATES: similar to AA sequence:RefSeq:WP_011910455.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF014048.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019196478.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611129.1
IS1182-like element ISPse1 family transposase
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011842199.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_010394541.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750731.1
COORDINATES: similar to AA sequence:RefSeq:WP_013068699.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750729.1
histidine phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006940101.1
COORDINATES: protein motif:HMM:NF024904.2
COORDINATES: similar to AA sequence:RefSeq:WP_014234152.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_009830099.1
COORDINATES: similar to AA sequence:RefSeq:WP_003085936.1
COORDINATES: similar to AA sequence:RefSeq:WP_011534423.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001892864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012729125.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005637082.1
COORDINATES: similar to AA sequence:RefSeq:WP_009604586.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011045888.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018263629.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012806958.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978649.1
COORDINATES: similar to AA sequence:RefSeq:WP_019918528.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_005978654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007068773.1
COORDINATES: similar to AA sequence:RefSeq:WP_009176019.1
COORDINATES: similar to AA sequence:RefSeq:WP_013330892.1
COORDINATES: similar to AA sequence:RefSeq:WP_009617733.1
COORDINATES: similar to AA sequence:RefSeq:WP_008936177.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395401.1
COORDINATES: similar to AA sequence:RefSeq:WP_020813549.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279564.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956061.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006814856.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007179.1
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007814680.1
COORDINATES: similar to AA sequence:RefSeq:WP_018906204.1
COORDINATES: similar to AA sequence:RefSeq:WP_003069134.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003069132.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003078736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001451.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558591.1
COORDINATES: similar to AA sequence:RefSeq:WP_020040569.1
COORDINATES: similar to AA sequence:RefSeq:WP_013538768.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846408.1
COORDINATES: similar to AA sequence:RefSeq:WP_017556032.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403154.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008887852.1
COORDINATES: similar to AA sequence:RefSeq:WP_017372650.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019962903.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001040.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019403156.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008887835.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887712.1
COORDINATES: similar to AA sequence:RefSeq:WP_008197376.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814111.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011539551.1
COORDINATES: similar to AA sequence:RefSeq:WP_020053069.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660469.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018689270.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012700784.1
COORDINATES: protein motif:HMM:NF012589.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: similar to AA sequence:RefSeq:WP_013150622.1
COORDINATES: protein motif:HMM:NF016114.2
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_018689466.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689467.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018689468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689469.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689470.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689471.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723950.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611724.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_053111694.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965512.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965513.1
COORDINATES: similar to AA sequence:RefSeq:WP_053111714.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887095.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887189.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010754.1
COORDINATES: similar to AA sequence:RefSeq:WP_015494259.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_017525522.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014252413.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018042466.1
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: similar to AA sequence:RefSeq:WP_015494264.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF013275.2
COORDINATES: similar to AA sequence:RefSeq:WP_012365180.1
COORDINATES: similar to AA sequence:RefSeq:WP_017030284.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067073.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874828.1
COORDINATES: similar to AA sequence:RefSeq:WP_018701296.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804070.1
COORDINATES: similar to AA sequence:RefSeq:WP_015494512.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279563.1