Paracoccus seriniphilus strain DSM 14827 plasmid p449297, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Biogeographic distribution of Paracoccus
Submitted (05-JAN-2021) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP067131.1.\nBacteria and source DNA available from Prof. Dr. Thorsten\nBrinkhoff, ICMB, University Oldenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-OCT-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 206.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/09/2023 17:31:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,084\nCDSs (total) :: 4,023\nGenes (coding) :: 3,920\nCDSs (with protein) :: 3,920\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 33 of 103\nPseudo Genes (incomplete) :: 90 of 103\nPseudo Genes (internal stop) :: 19 of 103\nPseudo Genes (multiple problems) :: 35 of 103\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007803648.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008192841.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020055112.1
COORDINATES: similar to AA sequence:RefSeq:WP_009830847.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009807789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801641.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801639.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018917126.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_011568563.1
COORDINATES: similar to AA sequence:RefSeq:WP_013961993.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011568565.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001348.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803901.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803899.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397516.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000783.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965908.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_009337374.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_010397504.1
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009809078.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000778.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750467.1
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: similar to AA sequence:RefSeq:WP_010396440.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011750603.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011750602.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_011537869.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014876209.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279626.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011567272.1
COORDINATES: similar to AA sequence:RefSeq:WP_009468072.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960754.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290151.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501865.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046470.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011336943.1
COORDINATES: similar to AA sequence:RefSeq:WP_005977877.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_011748893.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565864.1
GO:0050487 - sulfoacetaldehyde acetyltransferase activity [Evidence IEA]
GO:0019529 - taurine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018063694.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009815911.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009468075.1
COORDINATES: similar to AA sequence:RefSeq:WP_008205407.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815908.1
COORDINATES: similar to AA sequence:RefSeq:WP_009468067.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747339.1
GO:0008959 - phosphate acetyltransferase activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011537521.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_018067674.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067673.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011331270.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724859.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567129.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_018268846.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_008283087.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179387.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825319.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002720841.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791799.1
COORDINATES: similar to AA sequence:RefSeq:WP_009468070.1
COORDINATES: similar to AA sequence:RefSeq:WP_008207772.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007199535.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007119723.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018700367.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_014879161.1
COORDINATES: similar to AA sequence:RefSeq:WP_008331410.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019294821.1
COORDINATES: similar to AA sequence:RefSeq:WP_013046849.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009452730.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009452742.1
COORDINATES: protein motif:HMM:NF013253.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006932000.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651722.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018324495.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020058024.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007253732.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328444.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014766420.1
COORDINATES: similar to AA sequence:RefSeq:WP_014765483.1
COORDINATES: protein motif:HMM:NF013625.2
COORDINATES: protein motif:HMM:NF024929.2
COORDINATES: protein motif:HMM:NF019440.2
COORDINATES: protein motif:HMM:NF008653.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017630278.1
COORDINATES: similar to AA sequence:RefSeq:WP_006229159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006480926.1
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: similar to AA sequence:RefSeq:WP_017140346.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611179.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009826835.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976047.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008225731.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009807635.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015831970.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633990.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015920744.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911188.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574238.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014044487.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007797893.1
COORDINATES: similar to AA sequence:RefSeq:WP_010154442.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015499606.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499605.1
COORDINATES: protein motif:HMM:NF025004.2
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010505201.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499602.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020044114.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015499600.1
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF019421.2
COORDINATES: similar to AA sequence:RefSeq:WP_005848514.1
COORDINATES: similar to AA sequence:RefSeq:WP_011510338.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_017928965.1
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_015132611.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016648057.1
COORDINATES: similar to AA sequence:RefSeq:WP_009303411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177481.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516643.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_019014446.1
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: similar to AA sequence:RefSeq:WP_008884095.1
COORDINATES: similar to AA sequence:RefSeq:WP_005977808.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109328.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230107.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009827136.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827135.1
COORDINATES: protein motif:HMM:TIGR03571.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009827133.1
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008132875.1
COORDINATES: similar to AA sequence:RefSeq:WP_014285002.1
COORDINATES: similar to AA sequence:RefSeq:WP_008548985.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008889650.1
COORDINATES: similar to AA sequence:RefSeq:WP_008945950.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188520.1
COORDINATES: similar to AA sequence:RefSeq:WP_012631079.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011982890.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848490.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008347155.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006801423.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053314.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003551146.1
COORDINATES: protein motif:HMM:NF014349.2
COORDINATES: protein motif:HMM:NF013720.2
COORDINATES: similar to AA sequence:RefSeq:WP_008758861.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010441563.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441564.1
COORDINATES: similar to AA sequence:RefSeq:WP_013636820.1
COORDINATES: similar to AA sequence:RefSeq:WP_008204489.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013045208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009385996.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013045206.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169018.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007792048.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441560.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441551.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611917.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611133.1
COORDINATES: protein motif:HMM:NF012869.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF019032.2
COORDINATES: similar to AA sequence:RefSeq:WP_005851766.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005851765.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005851763.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_026155209.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827262.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_018633677.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000061.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633675.1
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612408.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018001168.1
COORDINATES: similar to AA sequence:RefSeq:WP_019995757.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637084.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010660871.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012219772.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004685989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006073978.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017967827.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001177.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:NF024039.2
COORDINATES: similar to AA sequence:RefSeq:WP_008563415.1
COORDINATES: similar to AA sequence:RefSeq:WP_007088987.1
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: similar to AA sequence:RefSeq:WP_007877220.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018064279.1
COORDINATES: similar to AA sequence:RefSeq:WP_011389117.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497110.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018064282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011456984.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910267.1
esterase-like activity of phytase family protein
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_009175299.1
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:TIGR00543.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397632.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397630.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998811.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762276.1
GO:0008668 - (2,3-dihydroxybenzoyl)adenylate synthase activity [Evidence IEA]
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
(2,3-dihydroxybenzoyl)adenylate synthase
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_010141858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179642.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008943200.1
COORDINATES: similar to AA sequence:RefSeq:WP_008959416.1
sialic acid TRAP transporter substrate-binding protein SiaP
COORDINATES: similar to AA sequence:RefSeq:WP_018690320.1
COORDINATES: similar to AA sequence:RefSeq:WP_003522951.1
COORDINATES: similar to AA sequence:RefSeq:WP_018690318.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018690315.1
COORDINATES: similar to AA sequence:RefSeq:WP_008615250.1
COORDINATES: similar to AA sequence:RefSeq:WP_018690322.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009605787.1
COORDINATES: similar to AA sequence:RefSeq:WP_009225677.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396025.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: similar to AA sequence:RefSeq:WP_012384593.1
GO:0004121 - cystathionine beta-lyase activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009814898.1
COORDINATES: similar to AA sequence:RefSeq:WP_009176636.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015930293.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814895.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009814894.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009604570.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749399.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012177329.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092553.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398782.1
COORDINATES: similar to AA sequence:RefSeq:WP_002968376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092550.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092549.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010395468.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748004.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748003.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395465.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748001.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO:0009310 - amine catabolic process [Evidence IEA]
quinohemoprotein amine dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008884373.1
quinohemoprotein amine dehydrogenase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_010395459.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
quinohemoprotein amine dehydrogenase maturation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747998.1
quinohemoprotein amine dehydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011747997.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396957.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538178.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751302.1
COORDINATES: similar to AA sequence:RefSeq:WP_019996180.1
COORDINATES: similar to AA sequence:RefSeq:WP_019996181.1
COORDINATES: similar to AA sequence:RefSeq:WP_018302908.1
COORDINATES: similar to AA sequence:RefSeq:WP_019996183.1
COORDINATES: similar to AA sequence:RefSeq:WP_003528877.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560431.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014874514.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881311.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204253.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533142.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012044835.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013533138.1
COORDINATES: similar to AA sequence:RefSeq:WP_011089068.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815897.1
COORDINATES: similar to AA sequence:RefSeq:WP_012335221.1
COORDINATES: similar to AA sequence:RefSeq:WP_011048367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279972.1
COORDINATES: similar to AA sequence:RefSeq:WP_012335225.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042796.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592667.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390040.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390038.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612188.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018719612.1
COORDINATES: similar to AA sequence:RefSeq:WP_009177141.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818131.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982480.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201900.1
COORDINATES: similar to AA sequence:RefSeq:WP_019996329.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385379.1
COORDINATES: similar to AA sequence:RefSeq:WP_007068099.1
COORDINATES: similar to AA sequence:RefSeq:WP_005852564.1
manganese/iron ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013385382.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007796574.1
COORDINATES: similar to AA sequence:RefSeq:WP_014657463.1
COORDINATES: similar to AA sequence:RefSeq:WP_004263510.1
COORDINATES: similar to AA sequence:RefSeq:WP_014133028.1
COORDINATES: similar to AA sequence:RefSeq:WP_007008436.1
bifunctional alpha/beta hydrolase/OsmC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008492080.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938468.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018689282.1
COORDINATES: similar to AA sequence:RefSeq:WP_018689281.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444022.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064440.1
COORDINATES: similar to AA sequence:RefSeq:WP_006938462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008492082.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200461.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018097173.1
COORDINATES: protein motif:HMM:NF020039.2
COORDINATES: similar to AA sequence:RefSeq:WP_018236887.1
COORDINATES: similar to AA sequence:RefSeq:WP_013780291.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_004400923.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF024770.2
COORDINATES: similar to AA sequence:RefSeq:WP_040604073.1
IS21-like element ISPkr1 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
COORDINATES: protein motif:HMM:NF012610.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018098742.1
COORDINATES: similar to AA sequence:RefSeq:WP_011041251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755633.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018001164.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006468374.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018001166.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803693.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002723188.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565119.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910293.1
COORDINATES: similar to AA sequence:RefSeq:WP_008122580.1
COORDINATES: similar to AA sequence:RefSeq:WP_015922940.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472054.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910289.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010660794.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565110.1
COORDINATES: similar to AA sequence:RefSeq:WP_006728252.1
COORDINATES: similar to AA sequence:RefSeq:WP_018303939.1
D-lyxose/D-mannose family sugar isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_005976912.1
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019403469.1
COORDINATES: similar to AA sequence:RefSeq:WP_010548936.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132810.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132809.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398784.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560655.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537106.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954680.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_020679474.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873826.1
COORDINATES: similar to AA sequence:RefSeq:WP_007204066.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034060.1
COORDINATES: similar to AA sequence:RefSeq:WP_008027264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008027261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006931922.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007197773.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825536.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505037.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887823.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505035.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008887783.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596823.1
COORDINATES: similar to AA sequence:RefSeq:WP_015663432.1
COORDINATES: similar to AA sequence:RefSeq:WP_013214867.1
COORDINATES: similar to AA sequence:RefSeq:WP_014873810.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009452566.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256838.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814174.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
fumarate hydratase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009452738.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452737.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452736.1
GO:0045282 - plasma membrane succinate dehydrogenase complex [Evidence IEA]
GO:0000104 - succinate dehydrogenase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
succinate dehydrogenase, cytochrome b556 subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009814472.1
COORDINATES: similar to AA sequence:RefSeq:WP_009561332.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452731.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008282779.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007814184.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011457002.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008284477.1
bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008558403.1