Paracoccus seriniphilus strain DSM 14827 plasmid p599725, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Biogeographic distribution of Paracoccus
Submitted (05-JAN-2021) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP067130.1.\nBacteria and source DNA available from Prof. Dr. Thorsten\nBrinkhoff, ICMB, University Oldenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-OCT-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 206.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/09/2023 17:31:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,084\nCDSs (total) :: 4,023\nGenes (coding) :: 3,920\nCDSs (with protein) :: 3,920\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 103\nCDSs (without protein) :: 103\nPseudo Genes (ambiguous residues) :: 0 of 103\nPseudo Genes (frameshifted) :: 33 of 103\nPseudo Genes (incomplete) :: 90 of 103\nPseudo Genes (internal stop) :: 19 of 103\nPseudo Genes (multiple problems) :: 35 of 103\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007803347.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010396953.1
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982795.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF018513.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011427389.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_086558163.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014430.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
COORDINATES: similar to AA sequence:RefSeq:WP_013963071.1
COORDINATES: protein motif:HMM:NF004799.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014875942.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014875943.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_007006901.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012643207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008883874.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007006904.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567753.1
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_015497729.1
COORDINATES: similar to AA sequence:RefSeq:WP_060835708.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007396168.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396167.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894544.1
COORDINATES: protein motif:HMM:NF012699.2
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281741.1
COORDINATES: similar to AA sequence:RefSeq:WP_026155209.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681492.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011453671.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002957738.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_013177908.1
COORDINATES: protein motif:HMM:NF024921.2
COORDINATES: similar to AA sequence:RefSeq:WP_006174787.1
COORDINATES: protein motif:HMM:NF025878.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024795.2
COORDINATES: similar to AA sequence:RefSeq:WP_007798652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012113365.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007798655.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007798657.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798658.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_007427943.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007798664.1
COORDINATES: similar to AA sequence:RefSeq:WP_015475448.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798668.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798673.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012596.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007798685.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007798688.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798690.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007435986.1
COORDINATES: protein motif:HMM:NF015297.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011287312.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798703.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010141133.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF015445.2
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_009804130.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019996796.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF024776.2
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013046313.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011048368.1
COORDINATES: similar to AA sequence:RefSeq:WP_020179183.1
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011048737.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_009175299.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611519.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006248280.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0089714 - UDP-N-acetyl-D-mannosamine dehydrogenase activity [Evidence IEA]
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]
UDP-N-acetyl-D-mannosamine dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019096947.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_011909027.1
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011909028.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007799259.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009570225.1
COORDINATES: similar to AA sequence:RefSeq:WP_020156712.1
COORDINATES: similar to AA sequence:RefSeq:WP_007608303.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011807868.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011566818.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013795439.1
COORDINATES: similar to AA sequence:RefSeq:WP_013659513.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015923136.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009572678.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_018687817.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009572680.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007684599.1
TM0106 family RecB-like putative nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_018496956.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761204.1
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: similar to AA sequence:RefSeq:WP_011566814.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF024854.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF025600.2
COORDINATES: similar to AA sequence:RefSeq:WP_011569741.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817871.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014820.2
COORDINATES: protein motif:HMM:NF023594.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF013429.2
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF014754.2
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014753.2
COORDINATES: protein motif:HMM:NF009498.0
COORDINATES: similar to AA sequence:RefSeq:WP_018291173.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: similar to AA sequence:RefSeq:WP_003386171.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551176.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290293.1
COORDINATES: similar to AA sequence:RefSeq:WP_008551028.1
COORDINATES: similar to AA sequence:RefSeq:WP_020028402.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF020110.2
COORDINATES: similar to AA sequence:RefSeq:WP_011045956.1
COORDINATES: similar to AA sequence:RefSeq:WP_013046954.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019965222.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019965221.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_019965220.1
acyclic terpene utilization AtuA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019965219.1
COORDINATES: similar to AA sequence:RefSeq:WP_005617048.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956876.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750347.1
COORDINATES: similar to AA sequence:RefSeq:WP_008519760.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
COORDINATES: similar to AA sequence:RefSeq:WP_020000147.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012876669.1
COORDINATES: similar to AA sequence:RefSeq:WP_009604562.1
COORDINATES: similar to AA sequence:RefSeq:WP_009829108.1
COORDINATES: similar to AA sequence:RefSeq:WP_004402287.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751250.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_018301019.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967696.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536972.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_011568511.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441003.1
COORDINATES: similar to AA sequence:RefSeq:WP_017928963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014879806.1
COORDINATES: similar to AA sequence:RefSeq:WP_006931451.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010440994.1
COORDINATES: similar to AA sequence:RefSeq:WP_019429869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012178786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008507740.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007206137.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962878.1
COORDINATES: similar to AA sequence:RefSeq:WP_012178782.1
sarcosine oxidase subunit gamma family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012178781.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505681.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007196017.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009176017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253721.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229864.1
COORDINATES: protein motif:HMM:NF016103.2
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: protein motif:HMM:NF024771.2
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016747187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014251520.1
COORDINATES: protein motif:HMM:NF013720.2
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF016180.2
COORDINATES: similar to AA sequence:RefSeq:WP_007790104.1
GO:0008890 - glycine C-acetyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007534220.1
GO:0008743 - L-threonine 3-dehydrogenase activity [Evidence IEA]
GO:0006567 - threonine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018124079.1
COORDINATES: similar to AA sequence:RefSeq:WP_008197054.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_003524584.1
COORDINATES: similar to AA sequence:RefSeq:WP_007794695.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139931.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_008995874.1
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_008885087.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_009505458.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533142.1
COORDINATES: similar to AA sequence:RefSeq:WP_005614670.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997457.1
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010974190.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019443610.1
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009374337.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_010912463.1
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014752954.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018261996.1
COORDINATES: similar to AA sequence:RefSeq:WP_006202866.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008259891.1
COORDINATES: protein motif:HMM:NF012436.2
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007427963.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574213.1
COORDINATES: similar to AA sequence:RefSeq:WP_008944449.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_003517228.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006311363.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
spore coat protein U domain-containing protein
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF017022.2
ChuX/HutX family heme-like substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001078.1
COORDINATES: similar to AA sequence:RefSeq:WP_009812867.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
heme ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009826413.1
COORDINATES: similar to AA sequence:RefSeq:WP_020093670.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842698.1
COORDINATES: similar to AA sequence:RefSeq:WP_006937399.1
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_009877276.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020053592.1
COORDINATES: similar to AA sequence:RefSeq:WP_008553991.1
COORDINATES: protein motif:HMM:NF020084.2
FIST N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009572793.1
COORDINATES: protein motif:HMM:TIGR03865.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009466019.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013067123.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_010394426.1
quinoprotein relay system zinc metallohydrolase 1
COORDINATES: similar to AA sequence:RefSeq:WP_009466733.1
PQQ-dependent methanol/ethanol family dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010394422.1
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_019297949.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:TIGR01230.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_018209181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008556145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012067486.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209179.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634012.1
COORDINATES: similar to AA sequence:RefSeq:WP_013332507.1
GO:0016787 - hydrolase activity [Evidence IEA]
alpha/beta hydrolase fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016855432.1
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020204501.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_007559212.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014432950.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177228.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013165674.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177226.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404049.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199247.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_005983099.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978489.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_011539483.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011338314.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009889.1
COORDINATES: protein motif:HMM:NF012565.2
COORDINATES: protein motif:HMM:NF012786.2
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: protein motif:HMM:NF017079.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316079.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335932.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611193.1
COORDINATES: similar to AA sequence:RefSeq:WP_008227969.1
metallo-mystery pair system four-Cys motif protein
COORDINATES: similar to AA sequence:RefSeq:WP_014538117.1
COORDINATES: protein motif:HMM:NF016221.2
COORDINATES: similar to AA sequence:RefSeq:WP_018633941.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750669.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633940.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_013382978.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289045.1
acetyl-CoA hydrolase/transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020039383.1
COORDINATES: similar to AA sequence:RefSeq:WP_020039384.1
Na(+)-translocating NADH-quinone reductase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_010141979.1
RnfABCDGE type electron transport complex subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_009450726.1
Na+-translocating NADH-quinone reductase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_009450727.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_009450728.1
GO:0006814 - sodium ion transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_007117502.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_018303366.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009450732.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802789.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573171.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573170.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573169.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573168.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807253.1
COORDINATES: similar to AA sequence:RefSeq:WP_006936090.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294380.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294378.1
COORDINATES: similar to AA sequence:RefSeq:WP_005848906.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005848907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014745010.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888181.1
COORDINATES: similar to AA sequence:RefSeq:WP_009208398.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020038305.1
COORDINATES: similar to AA sequence:RefSeq:WP_008562456.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196073.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009176090.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175903.1
COORDINATES: similar to AA sequence:RefSeq:WP_005637085.1
COORDINATES: similar to AA sequence:RefSeq:WP_005637082.1
COORDINATES: similar to AA sequence:RefSeq:WP_008184233.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006206713.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007119092.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465249.1
COORDINATES: similar to AA sequence:RefSeq:WP_009160897.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009828626.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009158866.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296379.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296380.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
betaine/proline/choline family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296381.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009812884.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011539328.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812112.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007596317.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467414.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558242.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467416.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006724583.1
COORDINATES: similar to AA sequence:RefSeq:WP_013653079.1
COORDINATES: similar to AA sequence:RefSeq:WP_013653078.1
COORDINATES: similar to AA sequence:RefSeq:WP_005978617.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_005982614.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749803.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_015064291.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001154.1
COORDINATES: protein motif:HMM:TIGR01892.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF013044.2
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009505916.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719725.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008283106.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120385.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120384.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008283109.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120382.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008559957.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008283111.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534325.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555094.1
COORDINATES: similar to AA sequence:RefSeq:WP_011456933.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_008887438.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887356.1
COORDINATES: similar to AA sequence:RefSeq:WP_020572163.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960734.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_019964444.1
COORDINATES: protein motif:HMM:TIGR01141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803314.1
COORDINATES: similar to AA sequence:RefSeq:WP_014162891.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020294818.1
COORDINATES: similar to AA sequence:RefSeq:WP_004576157.1
COORDINATES: similar to AA sequence:RefSeq:WP_020800490.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688814.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004385.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530403.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812706.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206715.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812708.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812709.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006206712.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530394.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229794.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007112619.1
COORDINATES: protein motif:HMM:NF025050.2
COORDINATES: similar to AA sequence:RefSeq:WP_008905566.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009826186.1
COORDINATES: similar to AA sequence:RefSeq:WP_005851830.1
COORDINATES: similar to AA sequence:RefSeq:WP_008905563.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020197655.1
COORDINATES: similar to AA sequence:RefSeq:WP_005565102.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013736.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013384236.1
COORDINATES: similar to AA sequence:RefSeq:WP_013797862.1
COORDINATES: similar to AA sequence:RefSeq:WP_013797861.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384233.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384232.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064996.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384230.1
COORDINATES: similar to AA sequence:RefSeq:WP_008974659.1
COORDINATES: similar to AA sequence:RefSeq:WP_005504548.1
COORDINATES: similar to AA sequence:RefSeq:WP_008029221.1
COORDINATES: similar to AA sequence:RefSeq:WP_006698720.1
COORDINATES: similar to AA sequence:RefSeq:WP_015468231.1
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: similar to AA sequence:RefSeq:WP_009506978.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886623.1
COORDINATES: similar to AA sequence:RefSeq:WP_009758636.1
COORDINATES: similar to AA sequence:RefSeq:WP_019171851.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010967916.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264090.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_003519658.1
COORDINATES: similar to AA sequence:RefSeq:WP_011840922.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005635517.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565620.1
COORDINATES: similar to AA sequence:RefSeq:WP_004123619.1
COORDINATES: similar to AA sequence:RefSeq:WP_004123617.1
COORDINATES: similar to AA sequence:RefSeq:WP_003181742.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316552.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017800763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004123607.1
COORDINATES: similar to AA sequence:RefSeq:WP_008281878.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229958.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495471.1
COORDINATES: similar to AA sequence:RefSeq:WP_015495472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814463.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814462.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_011482406.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097953.1
COORDINATES: similar to AA sequence:RefSeq:WP_006325498.1
bifunctional sugar-binding transcriptional regulator/dihydroxyacetone kinase subunit DhaK
COORDINATES: similar to AA sequence:RefSeq:WP_017271759.1
COORDINATES: similar to AA sequence:RefSeq:WP_011812017.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969455.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006469743.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659240.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_008884080.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009811169.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004123758.1
COORDINATES: similar to AA sequence:RefSeq:WP_005622862.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011539368.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092761.1
COORDINATES: similar to AA sequence:RefSeq:WP_011746733.1
COORDINATES: similar to AA sequence:RefSeq:WP_011568584.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537873.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006006 - glucose metabolic process [Evidence IEA]
ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010443448.1
organoarsenical effux MFS transporter ArsJ
COORDINATES: similar to AA sequence:RefSeq:WP_009817403.1
GO:0050611 - arsenate reductase (azurin) activity [Evidence IEA]
arsenate reductase (azurin) large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009817402.1
arsenate reductase (azurin) small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008027029.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009817400.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008027026.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017521449.1
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: similar to AA sequence:RefSeq:WP_019814849.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861194.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861195.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861196.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530452.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558287.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814528.1
COORDINATES: similar to AA sequence:RefSeq:WP_008757676.1
COORDINATES: similar to AA sequence:RefSeq:WP_009831017.1
COORDINATES: similar to AA sequence:RefSeq:WP_011049359.1
COORDINATES: similar to AA sequence:RefSeq:WP_008757554.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611693.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008758302.1
COORDINATES: similar to AA sequence:RefSeq:WP_008883593.1
COORDINATES: similar to AA sequence:RefSeq:WP_005854383.1
COORDINATES: similar to AA sequence:RefSeq:WP_009151353.1
COORDINATES: similar to AA sequence:RefSeq:WP_012662489.1
COORDINATES: protein motif:HMM:NF013918.2
ferric reductase-like transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012662491.1
COORDINATES: protein motif:HMM:NF013862.2
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018066797.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007279256.1
COORDINATES: protein motif:HMM:NF015366.2
COORDINATES: similar to AA sequence:RefSeq:WP_007120058.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007120057.1
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_007117916.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_008332526.1
COORDINATES: similar to AA sequence:RefSeq:WP_009451957.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750635.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397038.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747520.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723102.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024914.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611806.1
COORDINATES: similar to AA sequence:RefSeq:WP_040604073.1
IS21-like element ISPkr1 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611359.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611917.1
COORDINATES: similar to AA sequence:RefSeq:WP_009157880.1
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein