Phaeobacter porticola strain P97 plasmid pP97_c, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Phaeobacter.
Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton
Phaeobacter porticola sp. nov., an antibiotic-producing bacterium isolated from a sea harbour
Submitted (06-JUL-2016) Microbial Ecology and Diversity, Leibniz Institute DSMZ, Inhoffenstr. 7 B, Braunschweig 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP016367.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTPortal v. 2.3.0\nAssembly Name :: p97_hgap_1c_gs\nGenome Coverage :: 140x\nSequencing Technology :: PacBio; Illumina HiSeq 2500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 02:25:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,020\nCDSs (total) :: 3,948\nGenes (coding) :: 3,898\nCDSs (with protein) :: 3,898\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 3\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 23 of 50\nPseudo Genes (incomplete) :: 31 of 50\nPseudo Genes (internal stop) :: 18 of 50\nPseudo Genes (multiple problems) :: 18 of 50\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR03453.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF015393.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009574206.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398665.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002718002.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001787.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859736.1
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009827208.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065906.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065909.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820092.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450564.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_020038226.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820101.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827197.1
bifunctional class I SAM-dependent methyltransferase/DEAD/DEAH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_009820104.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803302.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827278.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496815.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881206.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015496817.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496818.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496819.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496820.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819899.1
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF024776.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011417543.1
COORDINATES: similar to AA sequence:RefSeq:WP_007195083.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925988.1
COORDINATES: similar to AA sequence:RefSeq:WP_011342509.1
putative DNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009148022.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009574117.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008335581.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819927.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859617.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009819930.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819931.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819831.1
COORDINATES: similar to AA sequence:RefSeq:WP_014746472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011047989.1
COORDINATES: similar to AA sequence:RefSeq:WP_012972745.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501003.1
COORDINATES: similar to AA sequence:RefSeq:WP_012178965.1
alanine/ornithine racemase family PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012178966.1
COORDINATES: similar to AA sequence:RefSeq:WP_012178967.1
COORDINATES: similar to AA sequence:RefSeq:WP_014875288.1
COORDINATES: similar to AA sequence:RefSeq:WP_005631495.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339464.1
COORDINATES: similar to AA sequence:RefSeq:WP_008556092.1
COORDINATES: similar to AA sequence:RefSeq:WP_005631521.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008556607.1
COORDINATES: similar to AA sequence:RefSeq:WP_008556373.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339465.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008556108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008031969.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807967.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503864.1