Rhodoferax koreense strain DCY-110 plasmid unnamed1.
type: Entry
definition: Rhodoferax koreense strain DCY-110 plasmid unnamed1.
sequence version: NZ_CP019237.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_CP019237.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN06118135
keyword: RefSeq
source: Rhodoferax koreense
organism: Rhodoferax koreense
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP019237.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-DEC-2016\nAssembly Method :: PacBio SMRT Analysis v. v2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 146.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 01:38:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,519\nCDSs (total) :: 5,460\nGenes (coding) :: 5,385\nCDSs (with protein) :: 5,385\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 40 of 75\nPseudo Genes (incomplete) :: 54 of 75\nPseudo Genes (internal stop) :: 6 of 75\nPseudo Genes (multiple problems) :: 21 of 75\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 23892
topology: linear
so has quality: SO_0000987
location: 1..23892
location: region:1-23892:1
RO_0002162: 1842727

NZ_CP019237
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN06118135
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kim, Y.J.
author: Farh, M.E.-A.
author: Yang, D.-C.
journal: Submitted (13-JAN-2017) College of Health Science, Korea University, Anamro, Seoul 02841, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23892:1
position: 23892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-23892:1:source
so part of: sequence
organism: Rhodoferax koreense
mol type: genomic DNA
strain: DCY-110
isolation source: environment
type material: type strain of Rhodoferax koreense
plasmid: unnamed1
collection date: 1991-01-01

1842727
type: Taxonomy
SIO_000068: taxonomy

RD110_RS26780
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26780
old locus tag: RD110_26780
pseudo: true
so part of: sequence
location: complement(<1..516)
location: region:1-516:-1
so has part: feature:1-516:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:516:-1
position: 516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-516:-1:exon

RD110_RS26780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26780
old locus tag: RD110_26780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013689236.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: M20/M25/M40 family metallo-hydrolase
SIO_010081: RD110_RS26780
subclass of: SO_0000673
so part of: RD110_RS26780
location: complement(<1..516)
location: region:1-516:-1
so has part: feature:1-516:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-516:-1:exon

RD110_RS26785
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26785
old locus tag: RD110_26785
pseudo: true
so part of: sequence
location: complement(540..1769)
location: region:540-1769:-1
so has part: feature:540-1769:-1:exon
subclass of: SO_0000010

position:540:-1
position: 540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1769:-1
position: 1769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:540-1769:-1:exon

RD110_RS26785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26785
old locus tag: RD110_26785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012367108.1
GO function: GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: diaminopropionate ammonia-lyase
SIO_010081: RD110_RS26785
subclass of: SO_0000673
so part of: RD110_RS26785
location: complement(540..1769)
location: region:540-1769:-1
so has part: feature:540-1769:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:540-1769:-1:exon

RD110_RS26790
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26790
old locus tag: RD110_26790
pseudo: true
so part of: sequence
location: complement(1948..2601)
location: region:1948-2601:-1
so has part: feature:1948-2601:-1:exon
subclass of: SO_0000010

position:1948:-1
position: 1948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2601:-1
position: 2601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1948-2601:-1:exon

RD110_RS26790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26790
old locus tag: RD110_26790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019701382.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: LysE family translocator
SIO_010081: RD110_RS26790
subclass of: SO_0000673
so part of: RD110_RS26790
location: complement(1948..2601)
location: region:1948-2601:-1
so has part: feature:1948-2601:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1948-2601:-1:exon

RD110_RS26795
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26795
old locus tag: RD110_26795
pseudo: true
so part of: sequence
location: complement(2616..3396)
location: region:2616-3396:-1
so has part: feature:2616-3396:-1:exon
subclass of: SO_0000010

position:2616:-1
position: 2616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3396:-1
position: 3396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2616-3396:-1:exon

RD110_RS26795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26795
old locus tag: RD110_26795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012631089.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: amino acid ABC transporter ATP-binding protein
SIO_010081: RD110_RS26795
subclass of: SO_0000673
so part of: RD110_RS26795
location: complement(2616..3396)
location: region:2616-3396:-1
so has part: feature:2616-3396:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2616-3396:-1:exon

RD110_RS26800
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26800
old locus tag: RD110_26800
pseudo: true
so part of: sequence
location: complement(3401..4497)
location: region:3401-4497:-1
so has part: feature:3401-4497:-1:exon
subclass of: SO_0000010

position:3401:-1
position: 3401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4497:-1
position: 4497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3401-4497:-1:exon

RD110_RS26800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26800
old locus tag: RD110_26800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012631090.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: amino acid ABC transporter permease
SIO_010081: RD110_RS26800
subclass of: SO_0000673
so part of: RD110_RS26800
location: complement(3401..4497)
location: region:3401-4497:-1
so has part: feature:3401-4497:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3401-4497:-1:exon

RD110_RS26805
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26805
old locus tag: RD110_26805
so part of: sequence
location: complement(4547..5668)
location: region:4547-5668:-1
so has part: feature:4547-5668:-1:exon
subclass of: SO_0000010

position:4547:-1
position: 4547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5668:-1
position: 5668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4547-5668:-1:exon

RD110_RS26805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26805
old locus tag: RD110_26805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015687573.1
GO component: GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO process: GO:0015837 - amine transport [Evidence IEA]
note: The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease subunit
translation: MRRVVWQVLAALIVIGVFSWLIGNAQANLGARNVASGFGFLQREAGLPIAEHLIPYTPADSYLRALVVGMLNTLWVAFWGIVLATILGTVIGVARLSKNWLLAKLMSAYVEFFRDLPLLLQLFLWYALLQGLPPVRQAIHPIAGVYLSNRGLSFPVLDWQTAHSWTLLAFILGLIATVISAKRATRKSLDDGRQRATWPTAVLLMAVMPATVVITLGAPFALDMPSPQSFNIRGGVTVSPEFFALLFGLVIYNAAFIAEIVRSGIQSVSHGQIEASRALGLKSSNTLKWIVFPQALRVIVPPLTSQYLNLAKQSSLAVAIGYQDIVSIATTAMNQNGQAVELVAIIMGVYLTISLSISALMNHYNARIALVER
SIO_010081: RD110_RS26805
subclass of: SO_0000673
so part of: RD110_RS26805
location: complement(4547..5668)
location: region:4547-5668:-1
so has part: feature:4547-5668:-1:exon

WP_083686622.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4547-5668:-1:exon

RD110_RS28745
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28745
so part of: sequence
location: complement(5799..6392)
location: region:5799-6392:-1
so has part: feature:5799-6392:-1:exon
subclass of: SO_0000010

position:5799:-1
position: 5799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6392:-1
position: 6392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5799-6392:-1:exon

RD110_RS28745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28745
inference: COORDINATES: protein motif:HMM:NF012707.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter substrate-binding domain-containing protein
translation: MISGGASVCFQPGSTGEVNAADFFRANKLEMKPVVIEKMEQMRDAIVSGRCDAYTNDTAQLASFKASIGSAGNDYQVLPEIISKEPLGAFIRKGDQRFFDIVRWTHAAMLNAEEFGMTAANIDKFRNNSNPAIQRFMGETGDLGAALGLDAQWAVNVVKGVGNYAEIYERSIAPLGLPRGLNRLLKDGGIQYAAPMR
SIO_010081: RD110_RS28745
subclass of: SO_0000673
so part of: RD110_RS28745
location: complement(5799..6392)
location: region:5799-6392:-1
so has part: feature:5799-6392:-1:exon

WP_239467327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5799-6392:-1:exon

RD110_RS28750
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28750
pseudo: true
so part of: sequence
location: complement(<6427..6648)
location: region:6427-6648:-1
so has part: feature:6427-6648:-1:exon
subclass of: SO_0000010

position:6427:-1
position: 6427
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:6648:-1
position: 6648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6427-6648:-1:exon

RD110_RS28750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28750
inference: COORDINATES: protein motif:HMM:NF012707.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transporter substrate-binding domain-containing protein
SIO_010081: RD110_RS28750
subclass of: SO_0000673
so part of: RD110_RS28750
location: complement(<6427..6648)
location: region:6427-6648:-1
so has part: feature:6427-6648:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6427-6648:-1:exon

RD110_RS26815
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26815
old locus tag: RD110_26815
so part of: sequence
location: 7159..7623
location: region:7159-7623:1
so has part: feature:7159-7623:1:exon
subclass of: SO_0000010

position:7159:1
position: 7159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7623:1
position: 7623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7159-7623:1:exon

RD110_RS26815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26815
old locus tag: RD110_26815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014616174.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Lrp/AsnC family transcriptional regulator
translation: MLLDNYDIKLLSLLQADSKISQRQLSEEVNLSPSAVNRRIAALEAAGVIMTTVAVVDPTAVGRPITILVEVKLESERLDLLDQVKKSFANCVQVQQVYYVTGDFDFMLVINVKDMSEYEKLTRELFFSAGNIKTFKTYVAMQRIKVSLNVPLTI
SIO_010081: RD110_RS26815
subclass of: SO_0000673
so part of: RD110_RS26815
location: 7159..7623
location: region:7159-7623:1
so has part: feature:7159-7623:1:exon

WP_076196736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7159-7623:1:exon

RD110_RS26820
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
gene: ggt
locus tag: RD110_RS26820
old locus tag: RD110_26820
so part of: sequence
location: 7632..9218
location: region:7632-9218:1
so has part: feature:7632-9218:1:exon
subclass of: SO_0000010

position:7632:1
position: 7632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9218:1
position: 9218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7632-9218:1:exon

RD110_RS26820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
gene: ggt
locus tag: RD110_RS26820
old locus tag: RD110_26820
EC number: 2.3.2.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018006582.1
GO process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-glutamyltransferase
translation: MRDFEAPSRSVAVGSRGMVATSNPQAALAGLDVLRSGGNAIDAAVAAAAMLAVVEPTQTGIGGDCFVMLRKRGQAPVALNGSGWAAKAASAEELRGRGMASIPVDSVHALTVPGAVRAWNRLVEDYGTRSLQELLEPAIGAAELGYLVTERLAHDWARQAAKMMATAEAKALFFPAGRAPALGERRSNPQLGKTLRAIAKSGADSFYEGWVAENIVTSLRKKGSLLSLDDFAEFKPEYVTPISASYRGYRLWECPPNGQGVVALQIAAMLEAFDLSAMGPLSAERFHLQAELSRIAYAQRNAFLCDPRFNAVDVNELLSDDTIERLTRGIDLDTKSDGWTPVALPEHKDTVYVSVADSDGTLVSFINSIYDDFGSGIVAPGTGVLMHNRGSGFVLEEGHPNELQGRKRPMHTIIPALVTKDADTVMSFGVTGGHFQPAGQLQVLSNIVDYGMSVQQAIDHARMFARGDVLELERTVPDAVWSGLRKRGHEPVAAPSPLGTCHAIWVDQGSGVYMGGSDGRRDGLAIGF
SIO_010081: RD110_RS26820
subclass of: SO_0000673
so part of: RD110_RS26820
location: 7632..9218
location: region:7632-9218:1
so has part: feature:7632-9218:1:exon

WP_076196734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7632-9218:1:exon

RD110_RS26825
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26825
old locus tag: RD110_26825
pseudo: true
so part of: sequence
location: complement(<9349..10040)
location: region:9349-10040:-1
so has part: feature:9349-10040:-1:exon
subclass of: SO_0000010

position:9349:-1
position: 9349
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10040:-1
position: 10040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9349-10040:-1:exon

RD110_RS26825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26825
old locus tag: RD110_26825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012206186.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SDR family oxidoreductase
SIO_010081: RD110_RS26825
subclass of: SO_0000673
so part of: RD110_RS26825
location: complement(<9349..10040)
location: region:9349-10040:-1
so has part: feature:9349-10040:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9349-10040:-1:exon

RD110_RS26830
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26830
old locus tag: RD110_26830
so part of: sequence
location: complement(10075..11076)
location: region:10075-11076:-1
so has part: feature:10075-11076:-1:exon
subclass of: SO_0000010

position:10075:-1
position: 10075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11076:-1
position: 11076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10075-11076:-1:exon

RD110_RS26830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26830
old locus tag: RD110_26830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016446384.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NADP-dependent oxidoreductase
translation: MQAFVLGRYGKKLAWPLADVPTPELRDDEVLVQVHAAGVNLLDSKIRDGEFKLILPYRLPLILGHDVAGVVVKVGPRVRQFKLGDEVYARADDFRIGTFAEFVPVKEASLALKPKGLTMEEAASIPLVALTAWQALIEKARLKKGQKVFIQAGSGGVGTFAIQLAKHLGATVATTTSTTNVALVKSLGADVVIDYKTQDFEDLLRDYDVVLNSQDNKTLEKSLRVLKRGGKLISISGPPDPEFGKDIGAPGFVKLVMRLLSSGIRRRAKSRGVGFSFLFMKPNGSQLREITRLFDAGVIRPVMDRVFPFESTNEALAYVEAGRAKGKVVIKIK
SIO_010081: RD110_RS26830
subclass of: SO_0000673
so part of: RD110_RS26830
location: complement(10075..11076)
location: region:10075-11076:-1
so has part: feature:10075-11076:-1:exon

WP_076196732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10075-11076:-1:exon

RD110_RS28755
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28755
old locus tag: RD110_26835
pseudo: true
so part of: sequence
location: complement(11142..>11291)
location: region:11142-11291:-1
so has part: feature:11142-11291:-1:exon
subclass of: SO_0000010

position:11142:-1
position: 11142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11291:-1
position: 11291
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11142-11291:-1:exon

RD110_RS28755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28755
old locus tag: RD110_26835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003274149.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: short-chain dehydrogenase/reductase
SIO_010081: RD110_RS28755
subclass of: SO_0000673
so part of: RD110_RS28755
location: complement(11142..>11291)
location: region:11142-11291:-1
so has part: feature:11142-11291:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11142-11291:-1:exon

RD110_RS26845
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26845
old locus tag: RD110_26845
so part of: sequence
location: 11353..12545
location: region:11353-12545:1
so has part: feature:11353-12545:1:exon
subclass of: SO_0000010

position:11353:1
position: 11353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12545:1
position: 12545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11353-12545:1:exon

RD110_RS26845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26845
old locus tag: RD110_26845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612070.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MSDKQVRAQYTREYKLEAVRQVKGGQSIAATAKVLGIPKASLSNWVRRGAKGDVGGVGDRPASVTPEQMELARLRAEVARLRMERDIGKKSRGVLRAGHAARYAWIYQMRNQYPVSISCEVLEVSASGYFVWQRRRDAARPGPAGRHSDEALLAHMRAIHIEVKQEYGWPRMHKELLARGIRVGKERVRHLMQQHGIKAKTKRKFVVTTDSRHSLPVAPDLVQRRFNPEAPNRLWSGDITYIATDEGWLYLAGVIDLFSRQVVGWSMQAHMQASLVKDALTMAWFRRRPEAGLIFHSDRGSQYCSHEFQDTLRVWEMRSSMSRKGNCWDNAPTESFWGRLKTASLYGRKFATRREAMDAVLDWMAFYNHRRLHSTLGYLSPMQYEQRWYEAQRKKAA
SIO_010081: RD110_RS26845
subclass of: SO_0000673
so part of: RD110_RS26845
location: join(11353..11614,11614..12545)
location: region:11353-12545:1
so has part: feature:11353-11614:1:exon
so has part: feature:11614-12545:1:exon

WP_087748592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11353-11614:1:exon

position:11614:1
position: 11614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11614-12545:1:exon

RD110_RS26850
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26850
old locus tag: RD110_26850
pseudo: true
so part of: sequence
location: complement(<12585..13253)
location: region:12585-13253:-1
so has part: feature:12585-13253:-1:exon
subclass of: SO_0000010

position:12585:-1
position: 12585
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:13253:-1
position: 13253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12585-13253:-1:exon

RD110_RS26850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26850
old locus tag: RD110_26850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003274149.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: oxidoreductase
SIO_010081: RD110_RS26850
subclass of: SO_0000673
so part of: RD110_RS26850
location: complement(<12585..13253)
location: region:12585-13253:-1
so has part: feature:12585-13253:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12585-13253:-1:exon

RD110_RS26855
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26855
old locus tag: RD110_26855
so part of: sequence
location: complement(13343..13942)
location: region:13343-13942:-1
so has part: feature:13343-13942:-1:exon
subclass of: SO_0000010

position:13343:-1
position: 13343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13942:-1
position: 13942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13343-13942:-1:exon

RD110_RS26855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26855
old locus tag: RD110_26855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011800699.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator
translation: MIIVMRKTNHNVRTAAKEASHERIVSAAARAIRRSGYDGTGVADIMKEAGLTHGAFYAHFTSREAMLTEAASRACAESAAVAAEVVASVPSEQALPSMLRVYLSREHLEQVEMGCPLAALGSETPRQAPEVRRVTTRHVKEMIDLVARQSPDWGQPGAHERALVTVATMVGTLLLARAVDEPALSDSLCAAALKHLPPT
SIO_010081: RD110_RS26855
subclass of: SO_0000673
so part of: RD110_RS26855
location: complement(13343..13942)
location: region:13343-13942:-1
so has part: feature:13343-13942:-1:exon

WP_076196730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13343-13942:-1:exon

RD110_RS28285
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28285
so part of: sequence
location: complement(13987..14136)
location: region:13987-14136:-1
so has part: feature:13987-14136:-1:exon
subclass of: SO_0000010

position:13987:-1
position: 13987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14136:-1
position: 14136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13987-14136:-1:exon

RD110_RS28285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28285
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDIDIASRHRIDVSGNEAQLSGEPLVFDHVLTLIRLPYSLVSLRCVAA
SIO_010081: RD110_RS28285
subclass of: SO_0000673
so part of: RD110_RS28285
location: complement(13987..14136)
location: region:13987-14136:-1
so has part: feature:13987-14136:-1:exon

WP_162277341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13987-14136:-1:exon

RD110_RS26860
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26860
old locus tag: RD110_26860
so part of: sequence
location: 14126..14428
location: region:14126-14428:1
so has part: feature:14126-14428:1:exon
subclass of: SO_0000010

position:14126:1
position: 14126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14428:1
position: 14428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14126-14428:1:exon

RD110_RS26860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26860
old locus tag: RD110_26860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIMVATGRGATQGASFRDAAAIDNLRRVDMLIVSKTGTLTSAGWLSDPVKAGTPAALAVLHAAGLRIVTATGDHALDRRRAAGHSVEVSLCRTQTALLF
SIO_010081: RD110_RS26860
subclass of: SO_0000673
so part of: RD110_RS26860
location: 14126..14428
location: region:14126-14428:1
so has part: feature:14126-14428:1:exon

WP_162277340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14126-14428:1:exon

RD110_RS26865
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26865
old locus tag: RD110_26865
so part of: sequence
location: complement(14546..15217)
location: region:14546-15217:-1
so has part: feature:14546-15217:-1:exon
subclass of: SO_0000010

position:14546:-1
position: 14546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15217:-1
position: 15217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14546-15217:-1:exon

RD110_RS26865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26865
old locus tag: RD110_26865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008964415.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FCD domain-containing protein
translation: MGISPSNSSITHSIYQVLRADLLKGRYAPDVKLKIADLGDALSVSSGVIREALSRLSAEGLVVAEPQRGFRVAPVSASEFIDLAGARVELEGICLRKAIELGNVEWESRIMSALHRLKRLSILGPAEAEDVLAVTDAHSEFHRALIDACGSDWLLRARDLLFTHSERYRWLSLLHANRERDLNSEHEELAKAVVERRPQLACELLGTHLNRTVDYLLGTDFLR
SIO_010081: RD110_RS26865
subclass of: SO_0000673
so part of: RD110_RS26865
location: complement(14546..15217)
location: region:14546-15217:-1
so has part: feature:14546-15217:-1:exon

WP_076196726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14546-15217:-1:exon

RD110_RS26870
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26870
old locus tag: RD110_26870
pseudo: true
so part of: sequence
location: complement(16452..17413)
location: region:16452-17413:-1
so has part: feature:16452-17413:-1:exon
subclass of: SO_0000010

position:16452:-1
position: 16452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17413:-1
position: 17413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16452-17413:-1:exon

RD110_RS26870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26870
old locus tag: RD110_26870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018609948.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: alpha/beta hydrolase
SIO_010081: RD110_RS26870
subclass of: SO_0000673
so part of: RD110_RS26870
location: complement(16452..17413)
location: region:16452-17413:-1
so has part: feature:16452-17413:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16452-17413:-1:exon

RD110_RS26875
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26875
old locus tag: RD110_26875
pseudo: true
so part of: sequence
location: complement(17464..18251)
location: region:17464-18251:-1
so has part: feature:17464-18251:-1:exon
subclass of: SO_0000010

position:17464:-1
position: 17464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18251:-1
position: 18251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17464-18251:-1:exon

RD110_RS26875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26875
old locus tag: RD110_26875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007248553.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SDR family oxidoreductase
SIO_010081: RD110_RS26875
subclass of: SO_0000673
so part of: RD110_RS26875
location: complement(17464..18251)
location: region:17464-18251:-1
so has part: feature:17464-18251:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17464-18251:-1:exon

RD110_RS26880
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26880
old locus tag: RD110_26880
pseudo: true
so part of: sequence
location: complement(18314..19400)
location: region:18314-19400:-1
so has part: feature:18314-19400:-1:exon
subclass of: SO_0000010

position:18314:-1
position: 18314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19400:-1
position: 19400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18314-19400:-1:exon

RD110_RS26880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26880
old locus tag: RD110_26880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011659691.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: alkene reductase
SIO_010081: RD110_RS26880
subclass of: SO_0000673
so part of: RD110_RS26880
location: complement(18314..19400)
location: region:18314-19400:-1
so has part: feature:18314-19400:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18314-19400:-1:exon

RD110_RS26885
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26885
old locus tag: RD110_26885
pseudo: true
so part of: sequence
location: complement(19503..20346)
location: region:19503-20346:-1
so has part: feature:19503-20346:-1:exon
subclass of: SO_0000010

position:19503:-1
position: 19503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20346:-1
position: 20346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19503-20346:-1:exon

RD110_RS26885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26885
old locus tag: RD110_26885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007381849.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: alpha/beta hydrolase
SIO_010081: RD110_RS26885
subclass of: SO_0000673
so part of: RD110_RS26885
location: complement(19503..20346)
location: region:19503-20346:-1
so has part: feature:19503-20346:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19503-20346:-1:exon

RD110_RS26890
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26890
old locus tag: RD110_26890
so part of: sequence
location: 20479..21102
location: region:20479-21102:1
so has part: feature:20479-21102:1:exon
subclass of: SO_0000010

position:20479:1
position: 20479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21102:1
position: 21102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20479-21102:1:exon

RD110_RS26890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26890
old locus tag: RD110_26890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018421926.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR family transcriptional regulator
translation: MKVTKAQAQANRAHIVETASALFRERGYDGVGVADLMAAAGFTHGGFYKHFGSKADLMAESAACGIAQTAALTAGVDTPDFVRAYVSREHRDARASGCTMAALGGDAARQPEAVRSTFVAGIESLLAELSRAGTALDGADPEQARARSLGILTHVVGAIVLSRACPDDSPLADEILTVCRDSILASVDLPGSPSAKTRASARERSAS
SIO_010081: RD110_RS26890
subclass of: SO_0000673
so part of: RD110_RS26890
location: 20479..21102
location: region:20479-21102:1
so has part: feature:20479-21102:1:exon

WP_076196716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20479-21102:1:exon

RD110_RS26895
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26895
old locus tag: RD110_26895
pseudo: true
so part of: sequence
location: complement(21160..>21463)
location: region:21160-21463:-1
so has part: feature:21160-21463:-1:exon
subclass of: SO_0000010

position:21160:-1
position: 21160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21463:-1
position: 21463
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21160-21463:-1:exon

RD110_RS26895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26895
old locus tag: RD110_26895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018905524.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: dihydroxy-acid dehydratase
SIO_010081: RD110_RS26895
subclass of: SO_0000673
so part of: RD110_RS26895
location: complement(21160..>21463)
location: region:21160-21463:-1
so has part: feature:21160-21463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21160-21463:-1:exon

RD110_RS28760
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
gene: dmpG
locus tag: RD110_RS28760
old locus tag: RD110_26900
pseudo: true
so part of: sequence
location: complement(<21466..22197)
location: region:21466-22197:-1
so has part: feature:21466-22197:-1:exon
subclass of: SO_0000010

position:21466:-1
position: 21466
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:22197:-1
position: 22197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21466-22197:-1:exon

RD110_RS28760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
gene: dmpG
locus tag: RD110_RS28760
old locus tag: RD110_26900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008305096.1
GO function: GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: 4-hydroxy-2-oxovalerate aldolase
SIO_010081: RD110_RS28760
subclass of: SO_0000673
so part of: RD110_RS28760
location: complement(<21466..22197)
location: region:21466-22197:-1
so has part: feature:21466-22197:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21466-22197:-1:exon

RD110_RS28765
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28765
old locus tag: RD110_26905
pseudo: true
so part of: sequence
location: complement(22265..>22452)
location: region:22265-22452:-1
so has part: feature:22265-22452:-1:exon
subclass of: SO_0000010

position:22265:-1
position: 22265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22452:-1
position: 22452
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22265-22452:-1:exon

RD110_RS28765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28765
old locus tag: RD110_26905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011797809.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: acetaldehyde dehydrogenase (acetylating)
SIO_010081: RD110_RS28765
subclass of: SO_0000673
so part of: RD110_RS28765
location: complement(22265..>22452)
location: region:22265-22452:-1
so has part: feature:22265-22452:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22265-22452:-1:exon

RD110_RS28770
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28770
old locus tag: RD110_26910
so part of: sequence
location: 22721..22867
location: region:22721-22867:1
so has part: feature:22721-22867:1:exon
subclass of: SO_0000010

position:22721:1
position: 22721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22867:1
position: 22867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22721-22867:1:exon

RD110_RS28770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28770
old locus tag: RD110_26910
inference: COORDINATES: protein motif:HMM:NF024934.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMLGLTRQTLALELKALAATGAISLPYGRVVIESEPALLAMSRSSTKS
SIO_010081: RD110_RS28770
subclass of: SO_0000673
so part of: RD110_RS28770
location: 22721..22867
location: region:22721-22867:1
so has part: feature:22721-22867:1:exon

WP_239467159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22721-22867:1:exon

RD110_RS26915
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS26915
old locus tag: RD110_26915
so part of: sequence
location: complement(22974..23492)
location: region:22974-23492:-1
so has part: feature:22974-23492:-1:exon
subclass of: SO_0000010

position:22974:-1
position: 22974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23492:-1
position: 23492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22974-23492:-1:exon

RD110_RS26915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS26915
old locus tag: RD110_26915
inference: COORDINATES: protein motif:HMM:NF012257.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Crp/Fnr family transcriptional regulator
translation: MPPATRCSVISGTVKISVLRGDGRHITYRLFESGDCFGQTSLVDGEPRPQSTEASNAVEVDVLSKMDFRWLCDRYRVFDRAISRLMAAQLRAMAQNYEGASLDSLPVRVARQLLLSRTMQLRTAEQDDSDESQIQMSQSDLAAMVGASRQSVNRVLQQLREKTRHRNQLWPH
SIO_010081: RD110_RS26915
subclass of: SO_0000673
so part of: RD110_RS26915
location: complement(22974..23492)
location: region:22974-23492:-1
so has part: feature:22974-23492:-1:exon

WP_275425883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22974-23492:-1:exon

RD110_RS28775
type: Gene
subclass of: SO_0000704
RO_0002162: 1842727
locus tag: RD110_RS28775
old locus tag: RD110_26920
pseudo: true
so part of: sequence
location: complement(23695..>23892)
location: region:23695-23892:-1
so has part: feature:23695-23892:-1:exon
subclass of: SO_0000010

position:23695:-1
position: 23695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23892:-1
position: 23892
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23695-23892:-1:exon

RD110_RS28775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1842727
locus tag: RD110_RS28775
old locus tag: RD110_26920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010162363.1
note: frameshifted; incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 2
transl table: 11
product: hypothetical protein
SIO_010081: RD110_RS28775
subclass of: SO_0000673
so part of: RD110_RS28775
location: complement(23695..>23892)
location: region:23695-23892:-1
so has part: feature:23695-23892:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23695-23892:-1:exon