Gopherus evgoodei ecotype Sinaloan lineage mitochondrion, complete sequence.
type: Entry
definition: Gopherus evgoodei ecotype Sinaloan lineage mitochondrion, complete sequence.
sequence version: NC_044186.1
sequence date: 2023-04-03
sequence: sequence
division: CON
label: NC_044186.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
dblink: SAMN03496275
keyword: RefSeq
source: mitochondrion Gopherus evgoodei (Goodes thornscrub tortoise)
organism: Gopherus evgoodei
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Gopherus.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM017320.\nThis assembly represents the principal haplotype of the diploid\ngenome Gopherus evgoodei and includes the chromosomes. The\nalternate haplotype sequences are in WGS project VHHO00000000.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-JAN-2019\nAssembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2;\n purge_haplotigs v. bitbucket 7.10.2018;\n scaff10x v. 2.1; Bionano Solve DLS v.\n 3.2.1; Salsa2 v. 2.2; Arrow v.\n 5.1.0.26412; longranger align v. 2.2.2;\n freebayes v. 1.2.0; gEVAL manual curation\n v. 2019-01-31; VGP standard assembly\n pipeline v. 1.5\nAssembly Name :: rGopEvg1_v1.p\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 58.0x\nSequencing Technology :: PacBio Sequel I; 10X Genomics linked\n reads; Arima Genomics Hi-C; Bionano\n Genomics DLS\n##Genome-Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16845
topology: circular
so has quality: SO_0000988
location: 1..16845
location: region:1-16845:1
RO_0002162: 1825980

NC_044186
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

SAMN03496275
type: BioSample
SIO_000068: biosample

1
title: G10K-VGP Goodes thornscrub tortoise genome, primary haplotype
author: Murphy, B.
author: Edwards, T.
author: Rhie, A.
author: Koren, S.
author: Phillippy, A.
author: Fedrigo, O.
author: Haase, B.
author: Mountcastle, J.
author: Lewin, H.
author: Damas, J.
author: Howe, K.
author: Formenti, G.
author: Myers, G.
author: Durbin, R.
author: Jarvis, E.D.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (01-AUG-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Murphy, B.
author: Edwards, T.
author: Rhie, A.
author: Koren, S.
author: Phillippy, A.
author: Fedrigo, O.
author: Haase, B.
author: Mountcastle, J.
author: Lewin, H.
author: Damas, J.
author: Howe, K.
author: Formenti, G.
author: Myers, G.
author: Durbin, R.
author: Jarvis, E.D.
journal: Submitted (19-JUN-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16845:1
position: 16845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16845:1:source
so part of: sequence
organism: Gopherus evgoodei
organelle: mitochondrion
mol type: genomic DNA
sex: male
tissue type: whole blood
ecotype: Sinaloan lineage
country: Mexico: Sonora
collection date: 2010-08-10
collected by: T. Edwards

1825980
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Phe
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1825980
product: 12S ribosomal RNA
so part of: sequence
location: 71..1044
location: region:71-1044:1
so has part: feature:71-1044:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1044:1
position: 1044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1044:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Val
so part of: sequence
location: 1045..1115
location: region:1045-1115:1
so has part: feature:1045-1115:1:region

position:1045:1
position: 1045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1115:1
position: 1115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1045-1115:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1825980
product: 16S ribosomal RNA
so part of: sequence
location: 1116..2721
location: region:1116-2721:1
so has part: feature:1116-2721:1:region

position:1116:1
position: 1116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2721:1
position: 2721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1116-2721:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2722..2797
location: region:2722-2797:1
so has part: feature:2722-2797:1:region

position:2722:1
position: 2722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2797:1
position: 2797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2722-2797:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND1
so part of: sequence
location: 2799..3769
location: region:2799-3769:1
so has part: feature:2799-3769:1:exon
subclass of: SO_0000010

41064170
type: Gene
SIO_000068: ncbigene

position:2799:1
position: 2799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3769:1
position: 3769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2799-3769:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3768..3769,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MKTLLSNLMSPLMYMIPILIAVAFFTLIERKVLGYMQSRKGPNIVGPYGLLQPVADGVKLFIKEPIYPSNSSITLFTLSPILALLLALSIWLPLPIPFPLADLNLGILFLISISSLMVYSILWSGWSSNSKYALMGALRAVAQTISYEVTLGIILLSLILFSGGFNMQTFMTTQEPMYLMFSTWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFTLFFLAEYSNILMMNTLTTILFLNPAHISNTPELFSMSLISKVMLLSAGFLWIRASYPRFRYDQLMHLLWKNFLPITLALCLWHMSMPTALSGLPPMP
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2799..3769
location: region:2799-3769:1
so has part: feature:2799-3769:1:exon

YP_009684390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2799-3769:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Ile
so part of: sequence
location: 3770..3839
location: region:3770-3839:1
so has part: feature:3770-3839:1:region

position:3770:1
position: 3770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3839:1
position: 3839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3770-3839:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Gln
so part of: sequence
location: complement(3839..3911)
location: region:3839-3911:-1
so has part: feature:3839-3911:-1:region

position:3839:-1
position: 3839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3911:-1
position: 3911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3839-3911:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Met
so part of: sequence
location: 3911..3979
location: region:3911-3979:1
so has part: feature:3911-3979:1:region

position:3911:1
position: 3911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3979:1
position: 3979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3911-3979:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND2
so part of: sequence
location: 3980..5018
location: region:3980-5018:1
so has part: feature:3980-5018:1:exon
subclass of: SO_0000010

41064173
type: Gene
SIO_000068: ncbigene

position:3980:1
position: 3980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5018:1
position: 5018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3980-5018:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5018,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPHASMIITSSLIMGPLLTMSSNHWILAWTGLEISTLAIIPLIAKQHHPRATEAAIKYFLTQATASTLILFSSIINAWTLGQWDITQMSNNIPCTILTTALAIKLGLAPFHFWLPEVLQGTTTTTALILTTWQKLAPLSLLVMTAQSLNTPLMLTLGLTSAIIAGWNGLNQTQLRKIMAFSSIAHLGWMTTILTLSPKLMLLTFYTYIIMTSTMFLMIKLLETNKISVMMTSWTKLPVLNTTMMLTLMSLAGLPPLTGFMPKWLIIQELTKQQMLIMATMMALLSLLNLFFYLRISYYATITLPPNSTSYSQQWRHKLSQKHYLAPMTTLSTTMLPTVPTLLAMT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3980..5018
location: region:3980-5018:1
so has part: feature:3980-5018:1:exon

YP_009684391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3980-5018:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Trp
so part of: sequence
location: 5019..5093
location: region:5019-5093:1
so has part: feature:5019-5093:1:region

position:5019:1
position: 5019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5093:1
position: 5093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5019-5093:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Ala
so part of: sequence
location: complement(5095..5163)
location: region:5095-5163:-1
so has part: feature:5095-5163:-1:region

position:5095:-1
position: 5095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5163:-1
position: 5163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5095-5163:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Asn
so part of: sequence
location: complement(5165..5237)
location: region:5165-5237:-1
so has part: feature:5165-5237:-1:region

position:5165:-1
position: 5165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5237:-1
position: 5237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5165-5237:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Cys
so part of: sequence
location: complement(5263..5329)
location: region:5263-5329:-1
so has part: feature:5263-5329:-1:region

position:5263:-1
position: 5263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5329:-1
position: 5329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5263-5329:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Tyr
so part of: sequence
location: complement(5330..5400)
location: region:5330-5400:-1
so has part: feature:5330-5400:-1:region

position:5330:-1
position: 5330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5400:-1
position: 5400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5330-5400:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: COX1
so part of: sequence
location: 5402..6949
location: region:5402-6949:1
so has part: feature:5402-6949:1:exon
subclass of: SO_0000010

41064178
type: Gene
SIO_000068: ncbigene

position:5402:1
position: 5402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6949:1
position: 6949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5402-6949:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFLIRWFFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTAINMKAPAMSQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVITYYTGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGMIKWDAAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYSLHQTWTKIHFGVMFAGVNMTFFPQHFLGLAGMPRRYSDYPDAYTLWNSISSIGSLISMVAVIMMMFIIWEAFSSKRKVMTVELMTTNVEWLHGCPPPYHTYEEPAHVQTQE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5402..6949
location: region:5402-6949:1
so has part: feature:5402-6949:1:exon

YP_009684392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5402-6949:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(6941..7011)
location: region:6941-7011:-1
so has part: feature:6941-7011:-1:region

position:6941:-1
position: 6941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7011:-1
position: 7011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6941-7011:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Asp
so part of: sequence
location: 7012..7081
location: region:7012-7081:1
so has part: feature:7012-7081:1:region

position:7012:1
position: 7012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7081:1
position: 7081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7012-7081:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: COX2
so part of: sequence
location: 7082..7768
location: region:7082-7768:1
so has part: feature:7082-7768:1:exon
subclass of: SO_0000010

41064180
type: Gene
SIO_000068: ncbigene

position:7082:1
position: 7082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7768:1
position: 7768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7082-7768:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPLQLGFQDAMSPAMEELLHFHDHTLMIVFLISTLVLYIITLMMTTKLTYISTMNAQEVEMVWTVLPAIVLITIALPSLRVLYLMDEINDPHLTIKAMGHQWYWTYEYTDYENLEFDSYMIPTQNLPYGYFRLLEVDHRMVMPMESPIRMLISAEDVLHSWAVPSLGVKSDAVPGRLNQSTFIIMRPGVFYGQCSEICGANHSFMPIVVESVPLEHFENWSSLMLS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7082..7768
location: region:7082-7768:1
so has part: feature:7082-7768:1:exon

YP_009684393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7082-7768:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Lys
so part of: sequence
location: 7772..7842
location: region:7772-7842:1
so has part: feature:7772-7842:1:region

position:7772:1
position: 7772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7842:1
position: 7842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7772-7842:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ATP8
so part of: sequence
location: 7844..8011
location: region:7844-8011:1
so has part: feature:7844-8011:1:exon
subclass of: SO_0000010

41064181
type: Gene
SIO_000068: ncbigene

position:7844:1
position: 7844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8011:1
position: 8011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7844-8011:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPDPWFLILSSTWLTYTMILQPKISSYLSMNNPTNKNNKIAHTKPWTWPWT
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7844..8011
location: region:7844-8011:1
so has part: feature:7844-8011:1:exon

YP_009684394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7844-8011:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ATP6
so part of: sequence
location: 8002..8685
location: region:8002-8685:1
so has part: feature:8002-8685:1:exon
subclass of: SO_0000010

41064156
type: Gene
SIO_000068: ncbigene

position:8002:1
position: 8002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8685:1
position: 8685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8002-8685:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNLTFFDQFMSPQILGVPLIILAMLTPSVIFPTQNNRWLTNRLSTLQLWTMNLFTKQLMLPINKTGHKWSIILTSLMIMLLMINLLGLLPYTFTPTTQLSMNMGLAVPMWAATVLTGLRNQLTTSLGHLLPEGTPTPLTPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLTSTAALALLPTMTTLSILTMMVLLLLTILELAVAMIQAYVFVLLLSLYLQENT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8002..8685
location: region:8002-8685:1
so has part: feature:8002-8685:1:exon

YP_009684395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8002-8685:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: COX3
so part of: sequence
location: 8685..9468
location: region:8685-9468:1
so has part: feature:8685-9468:1:exon
subclass of: SO_0000010

41064157
type: Gene
SIO_000068: ncbigene

position:9468:1
position: 9468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8685-9468:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9468,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQTHAYHMVDPSPWPLTGATAALLMTSGLAMWFHYSSMLLMALGLLTMLLTMLQWWRDIVREGTFQGHHTLPVQKGLRYGMILFITSEVFFFIGFFWAFYHSSLTPTPELGGCWPPTGITPLNPFEVPLLNTAVLLASGVTITWAHHSLMESNRNQTTQALGLTILLGLYFTVLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLIVCLMRQIKYHFTSTHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8685..9468
location: region:8685-9468:1
so has part: feature:8685-9468:1:exon

YP_009684396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8685-9468:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Gly
so part of: sequence
location: 9469..9536
location: region:9469-9536:1
so has part: feature:9469-9536:1:region

position:9469:1
position: 9469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9536:1
position: 9536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9469-9536:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND3
so part of: sequence
location: 9537..9885
location: region:9537-9885:1
so has part: feature:9537-9885:1:exon
subclass of: SO_0000010

41064182
type: Gene
SIO_000068: ncbigene

position:9537:1
position: 9537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9885:1
position: 9885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9537-9885:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9885,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNVTISIMTISLALSVVLMTLNYWLTLMKPDNEKLSPYECGFDPLESARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPHPTKSFTWAFIILLLLTLGLMYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9537..9885
location: region:9537-9885:1
so has part: feature:9537-9885:1:exon

YP_009684397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9537-9885:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Arg
so part of: sequence
location: 9886..9956
location: region:9886-9956:1
so has part: feature:9886-9956:1:region

position:9886:1
position: 9886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9956:1
position: 9956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9886-9956:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND4L
so part of: sequence
location: 9957..10253
location: region:9957-10253:1
so has part: feature:9957-10253:1:exon
subclass of: SO_0000010

41064183
type: Gene
SIO_000068: ncbigene

position:9957:1
position: 9957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10253:1
position: 10253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9957-10253:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPTHFSYYSAFIISITGLSLHRTHLISTLLCLEGMMLSLFVALSMWPIQLQTSSFMLMPMLMLSFSACEAGMGLSLLVASSRTHGSDRLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9957..10253
location: region:9957-10253:1
so has part: feature:9957-10253:1:exon

YP_009684398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9957-10253:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND4
so part of: sequence
location: 10247..11624
location: region:10247-11624:1
so has part: feature:10247-11624:1:exon
subclass of: SO_0000010

41064160
type: Gene
SIO_000068: ncbigene

position:10247:1
position: 10247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11624:1
position: 11624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10247-11624:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11624,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIIIPTVMLLPTVTLCKPKQLWTTALTHSLGIALLSLQWFKPSMGLTTFSNHYLGMDLISSPLLILSCWLTPLMILASQNHLTMEPISRKRTFILTIILLQISLILAFSATELIMFFIAFEATLIPTLVIITRWGNQMERLNAGTYFLFYTLAGSLPLLVALLSMQTQNGTLSTCMMQLNQPTMMYSWTNSMWWFALLTAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGIIRITMTLDPLSKMLSYPFMVMALWGVIMTSSICLRQTDLKSLIAYSSVSHMGLVIASTLAQTQWSYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLTRNMQSLLPLMGLWWLLASLTNMALPPTINLMGELTIIVSLFNWSNITILVTGLGTLITATYTLYMLITTQWGETPSHMKTISPTHTREHLLMMLHILPMTLLMMKPELIWGTFN
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10247..11624
location: region:10247-11624:1
so has part: feature:10247-11624:1:exon

YP_009684399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10247-11624:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-His
so part of: sequence
location: 11625..11692
location: region:11625-11692:1
so has part: feature:11625-11692:1:region

position:11625:1
position: 11625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11692:1
position: 11692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11625-11692:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11693..11758
location: region:11693-11758:1
so has part: feature:11693-11758:1:region

position:11693:1
position: 11693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11758:1
position: 11758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11693-11758:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11759..11830
location: region:11759-11830:1
so has part: feature:11759-11830:1:region

position:11759:1
position: 11759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11830:1
position: 11830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11759-11830:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND5
so part of: sequence
location: 11844..13631
location: region:11844-13631:1
so has part: feature:11844-13631:1:exon
subclass of: SO_0000010

41064186
type: Gene
SIO_000068: ncbigene

position:11844:1
position: 11844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13631:1
position: 13631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11844-13631:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNTTMLLTLFMLTLPLMTPMYPTMKAKTAVKMAFFTSVPPLIMFTLLDIESIITNFHWSHTSTFNINMSFKLDQYSMMFVPIALYVTWSILEFTNWYMSTDPDILKFFKYLLIFLVAMMILVTANNMFQFFIGWEGVGIMSFLLIGWWRGRTEANSSALQAIIYNRMGDIGLILSMSWLAVNTNTWELQQMFTCTNPTPLLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVIAGIFLLIRMHPILTTNNSALTTCLCLGAITTLFTAFCALTQNDIKKIIAFSTSSQLGLMMVSIGLNQPQLAFLHISMHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLHKSLPITSSCLTIGSLALTGMPFMTGFYSKDIIIETMNTSYLNAWALLLTLTATSFTAIYSLRIMTFVQTGQPRYHSAMLLNENNPTIINPITRLAMGSIIAGLIISMNITPLKTQPTTMPTYIKIAALVVTILGLLLALELTMMTNKMTPKPSNTHNLSNLLAYFNTLTHRSLPITNLKFSQNIATHLIDLSWYENIGPKGLTKLQITPITMISSSQKGLIKTYMTSFIMSIALITLLITMS
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11844..13631
location: region:11844-13631:1
so has part: feature:11844-13631:1:exon

YP_009684400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11844-13631:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: ND6
so part of: sequence
location: complement(13627..14151)
location: region:13627-14151:-1
so has part: feature:13627-14151:-1:exon
subclass of: SO_0000010

41064162
type: Gene
SIO_000068: ncbigene

position:13627:-1
position: 13627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14151:-1
position: 14151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13627-14151:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMYFMFLFGFCFVFWMVGVSCSSSPHYGVLSLVLGAASGCAVLVGKGGSFVSLVLFLIYLGGMLVIFAYSSALAAEPYPAGWGSLDVIIYWLCCVIAAMWLVMMDYSFWSVEDFGDSTTDADGLFVVRLDFGGVSWFYGLGKGILLIAGWGLLLTLFVVLELVYGLSRGVLRAI
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13627..14151)
location: region:13627-14151:-1
so has part: feature:13627-14151:-1:exon

YP_009684401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13627-14151:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Glu
so part of: sequence
location: complement(14152..14217)
location: region:14152-14217:-1
so has part: feature:14152-14217:-1:region

position:14152:-1
position: 14152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14217:-1
position: 14217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14152-14217:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 1825980
gene: CYTB
so part of: sequence
location: 14224..15367
location: region:14224-15367:1
so has part: feature:14224-15367:1:exon
subclass of: SO_0000010

41064187
type: Gene
SIO_000068: ncbigene

position:14224:1
position: 14224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15367:1
position: 15367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14224-15367:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825980
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15367,aa:TERM)
transl table: 2
product: cytochrome b
translation: MATNLRKTHPLMKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGIYYGSYLYKETWNTGIILLFTVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGDTLVQWIWGGFSVDNATLTRFFTFHFLLPFTIIGLAITHLLFLHETGSNNPTGLNSNADKIPFHPYFSYKDLLGLVLMLAILLTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLFLMPTLHTSKQRSTMFRPLTQTLFWCLVADLLVLTWIGGQPVEDPFITIGQAASILYFTIILMLMPITGMIENKMLNLK
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14224..15367
location: region:14224-15367:1
so has part: feature:14224-15367:1:exon

YP_009684402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14224-15367:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Thr
so part of: sequence
location: 15368..15438
location: region:15368-15438:1
so has part: feature:15368-15438:1:region

position:15368:1
position: 15368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15438:1
position: 15438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15368-15438:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1825980
product: tRNA-Pro
so part of: sequence
location: complement(15440..15508)
location: region:15440-15508:-1
so has part: feature:15440-15508:-1:region

position:15440:-1
position: 15440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15508:-1
position: 15508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15440-15508:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 1825980
note: control region
so part of: sequence
location: 15509..16460
location: region:15509-16460:1
so has part: feature:15509-16460:1:region

position:15509:1
position: 15509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16460:1
position: 16460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15509-16460:1:region