Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence.
type: Entry
definition: Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence.
sequence version: NZ_CP015198.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP015198.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04592763
keyword: RefSeq
source: Streptococcus marmotae
organism: Streptococcus marmotae
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015198.1.\nSource DNA and Bacteria are available from:1. National Institute\nfor Communicable Disease Control and Prevention, Chinese Center for\nDisease Control and Prevention,State Key Laboratory of Infectious\nDisease Prevention and Control, Changping, Changbai Road 155,\nBeijing, Beijing city 102206, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. version 2.0\nGenome Coverage :: 100x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 21:44:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,279\nCDSs (total) :: 2,205\nGenes (coding) :: 2,104\nCDSs (with protein) :: 2,104\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 101\nCDSs (without protein) :: 101\nPseudo Genes (ambiguous residues) :: 0 of 101\nPseudo Genes (frameshifted) :: 72 of 101\nPseudo Genes (incomplete) :: 41 of 101\nPseudo Genes (internal stop) :: 21 of 101\nPseudo Genes (multiple problems) :: 31 of 101\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7512
topology: circular
so has quality: SO_0000988
location: 1..7512
location: region:1-7512:1
RO_0002162: 1825069

NZ_CP015198
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04592763
type: BioSample
SIO_000068: biosample

1
title: Streptococcus marmotae sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet Plateau of China
author: Niu, L.
author: Hu, S.
author: Xu, J.
journal: Unpublished

2
title: Direct Submission
author: Niu, L.
author: Hu, S.
author: Xu, J.
journal: Submitted (01-APR-2016) National Institute for Communicable Disease Control and Prevention, China CDC, Changbai Road 155, Changping, Beijing 102206, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7512:1
position: 7512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7512:1:source
so part of: sequence
organism: Streptococcus marmotae
mol type: genomic DNA
strain: HTS5
isolation source: Glycerine
host: Marmota himalayana
type material: type strain of Streptococcus marmotae
plasmid: unnamed 2
country: China:Qinghai-Tibet Plateau
lat lon: 33.21 N 96.62 E
collection date: 2014-10-24

1825069
type: Taxonomy
SIO_000068: taxonomy

A4H00_RS11295
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11295
so part of: sequence
location: join(6356..7512,1..25)
location: region:1-7512:1
so has part: feature:6356-7512:1:exon
so has part: feature:1-25:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:6356-7512:1:exon

position:6356:1
position: 6356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-25:1:exon

position:25:1
position: 25
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

A4H00_RS11295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11295
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MKDKRINVLIDTYSAVSMFDEFFDVSDSRLLDKAFDEKIKLFIDVFELDVLGAIVPCKAVNGYTKAVCFEDNPNISIHVSQTSWEMHCFIYFSGAGLRRLKELYELKKGTEFHFYRTLYSAEEAGIRPSRCDVACDLIDCNVDFNDLFNRIQNNRVARFTTNSKSNGLRRISYPDRGYSIVGTANKIDTIYFGKRPNTLLRCYDKYAELEDKKKTTGLDTNDIKRFEGEFRKKDAVHLQKIFVEQTQIDDSINVAYSFLASALLNKFKISELDEKGNRIGYCKEFKLIEELLGSKDFLFVTYEKVDSELYKSVYYMQKSYLSLFQKIGLIYGEEALYDFFKFIHEQAESKVITNGTRSFVENNKDLLLENFDKTGIYPWRSNDSDNDIEYDII
SIO_010081: A4H00_RS11295
subclass of: SO_0000673
so part of: A4H00_RS11295
location: join(6356..7512,1..25)
location: region:1-7512:1
so has part: feature:6356-7512:1:exon
so has part: feature:1-25:1:exon

WP_067091718.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6356-7512:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-25:1:exon

A4H00_RS11300
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11300
so part of: sequence
location: 40..483
location: region:40-483:1
so has part: feature:40-483:1:exon
subclass of: SO_0000010

position:40:1
position: 40
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:483:1
position: 483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40-483:1:exon

A4H00_RS11300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11300
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKEKTSADLLFVFSESQKRIIVDNAKELDVSINEYIKRRMLSDEVAERYQIDSKNNADRIAFLESENKKLSVWLERSAKDLDMFSSTISGLNEIINSLVKEKEYLIEEQKVLQLELEHERMPFWRRLLGVKKEVKASFSPFFIIFL
SIO_010081: A4H00_RS11300
subclass of: SO_0000673
so part of: A4H00_RS11300
location: 40..483
location: region:40-483:1
so has part: feature:40-483:1:exon

WP_067091689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40-483:1:exon

A4H00_RS12310
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS12310
so part of: sequence
location: 551..676
location: region:551-676:1
so has part: feature:551-676:1:exon
subclass of: SO_0000010

position:551:1
position: 551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:676:1
position: 676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:551-676:1:exon

A4H00_RS12310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS12310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLKSYRFNHELFLQDNSKLVVKNFKTWLDFETKKRAGLSI
SIO_010081: A4H00_RS12310
subclass of: SO_0000673
so part of: A4H00_RS12310
location: 551..676
location: region:551-676:1
so has part: feature:551-676:1:exon

WP_257721999.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:551-676:1:exon

A4H00_RS11305
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11305
so part of: sequence
location: 881..1717
location: region:881-1717:1
so has part: feature:881-1717:1:exon
subclass of: SO_0000010

position:881:1
position: 881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1717:1
position: 1717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:881-1717:1:exon

A4H00_RS11305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11305
inference: COORDINATES: protein motif:HMM:NF013727.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsK/SpoIIIE domain-containing protein
translation: MNNKFLLKHQLLNIIFLNLILLLLFVLSILNHNFQFLISVTLAIVSVTAFVSFYYLKYLLYRDCFKNIEFKKIWEDFKIYKSIENSFIETEMIDDNKIPLFFKKDDEFCIKMSANFVKRLDKFQSILDSNLPRFFIIQEFKKDVINKYYILKIVDSRTTAGKTFDNFLDFDQSIGLLRSGGYQMKLGTNYLVDMQQTPNLIISGKSGSGKTNLIYSVILQILSKTSKESLYLVDVKRELSKFSKFLNVAFEYDDVIAFIDCLLNEIKERMRIMTEKKC
SIO_010081: A4H00_RS11305
subclass of: SO_0000673
so part of: A4H00_RS11305
location: 881..1717
location: region:881-1717:1
so has part: feature:881-1717:1:exon

WP_067091692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:881-1717:1:exon

A4H00_RS11310
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11310
so part of: sequence
location: 1749..2180
location: region:1749-2180:1
so has part: feature:1749-2180:1:exon
subclass of: SO_0000010

position:1749:1
position: 1749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2180:1
position: 2180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1749-2180:1:exon

A4H00_RS11310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIIDEFASLALSCSKKELSDLQSKLNQIVLLGRKTGVFTIISAQYHTNESSLPFGVRESLTIKVSLGSANHLALAGLGIPVDENNKVERFFKKGEGLIYGLENQVFNSYFFQSDFLNFDVVEIIEYIVSTSQKLLNKNESPFN
SIO_010081: A4H00_RS11310
subclass of: SO_0000673
so part of: A4H00_RS11310
location: 1749..2180
location: region:1749-2180:1
so has part: feature:1749-2180:1:exon

WP_067091697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1749-2180:1:exon

A4H00_RS11315
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11315
so part of: sequence
location: 2606..3787
location: region:2606-3787:1
so has part: feature:2606-3787:1:exon
subclass of: SO_0000010

position:2606:1
position: 2606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3787:1
position: 3787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2606-3787:1:exon

A4H00_RS11315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11315
inference: COORDINATES: protein motif:HMM:NF014537.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MKDKRINVLIDTYSAVSMFDEFFDVSDSRLLDKAFDEKIKLFIDVFELDVLGAIVPCKAVNGYTKAVCFEDNPNISIHVSQTSWEMHCFIYFSGAGLRRLKELYELKKGTEFHFYRTLYSAEEAGIRPSRCDVACDLIDCNVDFNDLFNRIQNNRVARFTTNSKSNGLRRISYPDRGYSIVGTANKIDTIYFGKRPNTLLRCYDKYAELEDKKKTTGLDTNDIKRFEGEFRKKDAVHLQKIFVEQTQIDDSINVAYSFLASALLNKFKISELDEKGNRIGYCKEFKLIEELLGSKDFLFVTYEKVDSELYKSVYYMQKSYLSLFQKIGLIYGEEALYDFFKFIHEQAESKVITNGTRSFVENNKDLLLENFDKTGIYPWRSNDSDNDIEYDII
SIO_010081: A4H00_RS11315
subclass of: SO_0000673
so part of: A4H00_RS11315
location: 2606..3787
location: region:2606-3787:1
so has part: feature:2606-3787:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2606-3787:1:exon

A4H00_RS11320
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11320
so part of: sequence
location: 3802..4203
location: region:3802-4203:1
so has part: feature:3802-4203:1:exon
subclass of: SO_0000010

position:3802:1
position: 3802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4203:1
position: 4203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3802-4203:1:exon

A4H00_RS11320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11320
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKEKQVQIIVRVSESQKRIIVDNAKELDVSINEYIKRRMLSDEVAERYQIDSKNNADRIAFLESENKKLSVWLERSAKDLDMFSSTISGLNEIINSLVKEKEYLIEEQKVLQLELEHERMPFWRRLLGVKKK
SIO_010081: A4H00_RS11320
subclass of: SO_0000673
so part of: A4H00_RS11320
location: 3802..4203
location: region:3802-4203:1
so has part: feature:3802-4203:1:exon

WP_067091706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3802-4203:1:exon

A4H00_RS11325
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11325
so part of: sequence
location: 4308..4640
location: region:4308-4640:1
so has part: feature:4308-4640:1:exon
subclass of: SO_0000010

position:4308:1
position: 4308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4640:1
position: 4640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4308-4640:1:exon

A4H00_RS11325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11325
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLKSYRFNHELFLQDNSKLVVKNFKTWLDFETKKELGLAFEVIILNDDSENYFETFNVKIRNWTLEKNNLKIGDYIQIFDIEKASIFGQYQNEVSFIAKIKKVEVSGHE
SIO_010081: A4H00_RS11325
subclass of: SO_0000673
so part of: A4H00_RS11325
location: 4308..4640
location: region:4308-4640:1
so has part: feature:4308-4640:1:exon

WP_067091710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4308-4640:1:exon

A4H00_RS11330
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11330
so part of: sequence
location: 4633..5931
location: region:4633-5931:1
so has part: feature:4633-5931:1:exon
subclass of: SO_0000010

position:4633:1
position: 4633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5931:1
position: 5931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4633-5931:1:exon

A4H00_RS11330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11330
inference: COORDINATES: protein motif:HMM:NF013727.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsK/SpoIIIE domain-containing protein
translation: MNNKFLLKHQLLNIIFLNLILLLLFVLSILNHNFQFLISVTLAIVSVTAFVSFYYLKYLLYRDCFKNIEFKKIWEDFKIYKSIENSFIETEMIDDNKIPLFFKKDDEFCIKMSANFVKRLDKFQSILDSNLPRFFIIQEFKKDVINKYYILKIVDSRTTAGKTFDNFLDFDQSIGLLRSGGYQMKLGTNYLVDMQQTPNLIISGKSGSGKTNLIYSVILQILSKTSKESLYLVDVKRELSKFSKFLNVAFEYDDVIAFIDCLLNEIKERMRIMTEKNVDDCSELFHAKYLIIDEFASLALSCSKKELSDLQSKLNQIVLLGRKTGVFTIISAQYHTNESSLPFGVRESLTIKVSLGSANHLALAGLGIPVDENNKVERFFKKGEGLIYGLENQVFNSYFFQSDFLNFDVVEIIEYIVSTSQKLLNKNESPFN
SIO_010081: A4H00_RS11330
subclass of: SO_0000673
so part of: A4H00_RS11330
location: 4633..5931
location: region:4633-5931:1
so has part: feature:4633-5931:1:exon

WP_067091714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4633-5931:1:exon