Streptococcus marmotae strain HTS5 plasmid unnamed 1, complete sequence.
type: Entry
definition: Streptococcus marmotae strain HTS5 plasmid unnamed 1, complete sequence.
sequence version: NZ_CP015197.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP015197.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04592763
keyword: RefSeq
source: Streptococcus marmotae
organism: Streptococcus marmotae
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015197.1.\nSource DNA and Bacteria are available from:1. National Institute\nfor Communicable Disease Control and Prevention, Chinese Center for\nDisease Control and Prevention,State Key Laboratory of Infectious\nDisease Prevention and Control, Changping, Changbai Road 155,\nBeijing, Beijing city 102206, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. version 2.0\nGenome Coverage :: 100x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 21:44:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,279\nCDSs (total) :: 2,205\nGenes (coding) :: 2,104\nCDSs (with protein) :: 2,104\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 101\nCDSs (without protein) :: 101\nPseudo Genes (ambiguous residues) :: 0 of 101\nPseudo Genes (frameshifted) :: 72 of 101\nPseudo Genes (incomplete) :: 41 of 101\nPseudo Genes (internal stop) :: 21 of 101\nPseudo Genes (multiple problems) :: 31 of 101\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5997
topology: circular
so has quality: SO_0000988
location: 1..5997
location: region:1-5997:1
RO_0002162: 1825069

NZ_CP015197
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04592763
type: BioSample
SIO_000068: biosample

1
title: Streptococcus marmotae sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet Plateau of China
author: Niu, L.
author: Hu, S.
author: Xu, J.
journal: Unpublished

2
title: Direct Submission
author: Niu, L.
author: Hu, S.
author: Xu, J.
journal: Submitted (01-APR-2016) National Institute for Communicable Disease Control and Prevention, China CDC, Changbai Road 155, Changping, Beijing 102206, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5997:1
position: 5997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5997:1:source
so part of: sequence
organism: Streptococcus marmotae
mol type: genomic DNA
strain: HTS5
isolation source: Glycerine
host: Marmota himalayana
type material: type strain of Streptococcus marmotae
plasmid: unnamed 1
country: China:Qinghai-Tibet Plateau
lat lon: 33.21 N 96.62 E
collection date: 2014-10-24

1825069
type: Taxonomy
SIO_000068: taxonomy

A4H00_RS11260
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11260
so part of: sequence
location: 196..489
location: region:196-489:1
so has part: feature:196-489:1:exon
subclass of: SO_0000010

position:196:1
position: 196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489:1
position: 489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196-489:1:exon

A4H00_RS11260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNEVIILGARPYDFTDERTGKQITGVSCHVLPLTNVDPLNTSGLIPVKYSLTPEQFAEIAQTPLPARAKMHMTVNIATKKVSFEKFSDVAVLDLAG
SIO_010081: A4H00_RS11260
subclass of: SO_0000673
so part of: A4H00_RS11260
location: 196..489
location: region:196-489:1
so has part: feature:196-489:1:exon

WP_067091663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:196-489:1:exon

A4H00_RS11265
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11265
so part of: sequence
location: 714..989
location: region:714-989:1
so has part: feature:714-989:1:exon
subclass of: SO_0000010

position:714:1
position: 714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:989:1
position: 989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:714-989:1:exon

A4H00_RS11265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLALENLTKVIQEQPPSSDDAILKELEKLNSSYDELKTAETTEQVKKLVTQIQKDYDHYHFQTSVVAFYGILIIPALLLFLFLHHLLKQFL
SIO_010081: A4H00_RS11265
subclass of: SO_0000673
so part of: A4H00_RS11265
location: 714..989
location: region:714-989:1
so has part: feature:714-989:1:exon

WP_067091666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:714-989:1:exon

A4H00_RS11965
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11965
so part of: sequence
location: 1049..1189
location: region:1049-1189:1
so has part: feature:1049-1189:1:exon
subclass of: SO_0000010

position:1049:1
position: 1049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1189:1
position: 1189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1049-1189:1:exon

A4H00_RS11965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11965
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITAELLAPVKDAVMQAVPAVLPVGATMLGVSMAVGFTVKTLKKFF
SIO_010081: A4H00_RS11965
subclass of: SO_0000673
so part of: A4H00_RS11965
location: 1049..1189
location: region:1049-1189:1
so has part: feature:1049-1189:1:exon

WP_157771016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1049-1189:1:exon

A4H00_RS11270
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11270
so part of: sequence
location: 1235..1855
location: region:1235-1855:1
so has part: feature:1235-1855:1:exon
subclass of: SO_0000010

position:1235:1
position: 1235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1855:1
position: 1855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1235-1855:1:exon

A4H00_RS11270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKFKKIKILFCIILLIFNLAYRPKPVKADAGVASFGGMTLIALNPEIWPVVLVGLAAALLLGYTITNWDDISAFGAAVVEQLEIAGHSVDEFVSGTSVKIDATFKKAVKKASVGEKNSISRYIDKNSYTYSNGFRVLLGSHKINAGYVLVFPEGRNIFTGNLEKGKYFRNIKYNPETDFLGTSLSVSMEILPLPDKFNPLFILQV
SIO_010081: A4H00_RS11270
subclass of: SO_0000673
so part of: A4H00_RS11270
location: 1235..1855
location: region:1235-1855:1
so has part: feature:1235-1855:1:exon

WP_067091670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1235-1855:1:exon

A4H00_RS11275
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11275
so part of: sequence
location: 2098..2457
location: region:2098-2457:1
so has part: feature:2098-2457:1:exon
subclass of: SO_0000010

position:2098:1
position: 2098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2457:1
position: 2457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2098-2457:1:exon

A4H00_RS11275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11275
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIQLFLPTTTVKFDPKARVDGTTLVPTVQELERIRAGSAVGAQAGTVTLTGANSMTATGASTGLGLDWLAKLWEWLKKLLDAILSIPGAILDGLKALWDWLAKILQAIGAIPGQLLNGW
SIO_010081: A4H00_RS11275
subclass of: SO_0000673
so part of: A4H00_RS11275
location: 2098..2457
location: region:2098-2457:1
so has part: feature:2098-2457:1:exon

WP_067091673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2098-2457:1:exon

A4H00_RS11280
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11280
so part of: sequence
location: 3166..3849
location: region:3166-3849:1
so has part: feature:3166-3849:1:exon
subclass of: SO_0000010

position:3166:1
position: 3166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3166-3849:1:exon

A4H00_RS11280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000947694.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zonular occludens toxin domain-containing protein
translation: MKKKGNRVKGQFETLSEKPFGSLVYDMVQRIKNGREFKEYGLTLYCGRQGGGKTMAMTEYLERMRKLYPEALIVTNFGYIHQDLEMTSWQQIFEIRNGLKGVIFAIDEIQNEYNSSAWQKFPEGLLAEITQQRKQRIKIVGTSQVFTRVVKQLREQTYEVVECQTVGGRWTFTRAFDAEDYNAVCERPEAKAKIRRLWRRSFVQNKKLREKFDSYAKIERMAKEIKG
SIO_010081: A4H00_RS11280
subclass of: SO_0000673
so part of: A4H00_RS11280
location: 3166..3849
location: region:3166-3849:1
so has part: feature:3166-3849:1:exon

WP_067091685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3166-3849:1:exon

A4H00_RS11285
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11285
so part of: sequence
location: 4116..5057
location: region:4116-5057:1
so has part: feature:4116-5057:1:exon
subclass of: SO_0000010

position:4116:1
position: 4116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5057:1
position: 5057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4116-5057:1:exon

A4H00_RS11285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001893498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MEEVLNQGQILVDKNKKGKDRRWKERKILSLKLADIFEQLQYKETMVERVSACCDVLKFIQQADGNLKLYQSYFCKNKLCPLCNWRRSMKYSYQTSRIVDEAMIQYPKGRFLFLTLTVKNVPGSELNTTISSLTKSFDRLFKRAKVQKNLLGYLRSVEVTHNEAENTYHPHIHVLMMVKPGYFKGGSYISQEDWGQMWAQSLKVDYIPLVDIRAVKEQGKGLKGAILETAKYPTKPFELSMENAQVVDDLYNGLYRKRQLGYGGVFKEIKKKLALDDAENGDLVHTADENDDLSSGTKIVAIWNATKQNYIIK
SIO_010081: A4H00_RS11285
subclass of: SO_0000673
so part of: A4H00_RS11285
location: 4116..5057
location: region:4116-5057:1
so has part: feature:4116-5057:1:exon

WP_067091678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4116-5057:1:exon

A4H00_RS11290
type: Gene
subclass of: SO_0000704
RO_0002162: 1825069
locus tag: A4H00_RS11290
so part of: sequence
location: 5209..5502
location: region:5209-5502:1
so has part: feature:5209-5502:1:exon
subclass of: SO_0000010

position:5209:1
position: 5209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5502:1
position: 5502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5209-5502:1:exon

A4H00_RS11290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1825069
locus tag: A4H00_RS11290
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIFKRIKKYIILFLGSVAVLGGLMYFSEKTEADTYSPWVPYSYGPIQYDNFTYNGFKPMKRKFRWVKYVRTYTDNNGRSRYLYKDEIENLGIMPR
SIO_010081: A4H00_RS11290
subclass of: SO_0000673
so part of: A4H00_RS11290
location: 5209..5502
location: region:5209-5502:1
so has part: feature:5209-5502:1:exon

WP_067091681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5209-5502:1:exon