Vibrio japonicus strain JCM 31412 plasmid p1, complete sequence.
type: Entry
definition: Vibrio japonicus strain JCM 31412 plasmid p1, complete sequence.
sequence version: NZ_CP102098.1
sequence date: 2022-08-08
sequence: sequence
division: CON
label: NZ_CP102098.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN29984769
keyword: RefSeq
source: Vibrio japonicus
organism: Vibrio japonicus
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP102098.1.\nBacteria and source DNA available from Belgian Co-ordinated\nCollection of Micro-Organisms BCCM/LMG (LMG 29636).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.15.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 140.0x\nSequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/07/2022 13:16:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,999\nCDSs (total) :: 3,840\nGenes (coding) :: 3,802\nCDSs (with protein) :: 3,802\nGenes (RNA) :: 159\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 121\nncRNAs :: 4\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 14 of 38\nPseudo Genes (incomplete) :: 27 of 38\nPseudo Genes (internal stop) :: 12 of 38\nPseudo Genes (multiple problems) :: 12 of 38\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 13637
topology: circular
so has quality: SO_0000988
location: 1..13637
location: region:1-13637:1
RO_0002162: 1824638

NZ_CP102098
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN29984769
type: BioSample
SIO_000068: biosample

1
title: Complete genome of Vibrio japonicus strain JCM 31412T and phylogenomic assessment of the Nereis clade of the genus Vibrio
author: Shlafstein, M.D.
author: Emsley, S.A.
author: Ushijima, B.
author: Videau, P.
author: Saw, J.H.
journal: Unpublished

2
title: Direct Submission
author: Shlafstein, M.D.
author: Emsley, S.A.
author: Ushijima, B.
author: Videau, P.
author: Saw, J.H.
journal: Submitted (29-JUL-2022) Biology, Southern Oregon University Biology Department, 1250 Siskiyou Blvd, Ashland, Oregon 97520-5001, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13637:1
position: 13637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13637:1:source
so part of: sequence
organism: Vibrio japonicus
mol type: genomic DNA
strain: JCM 31412
isolation source: seawater
culture collection: LMG:29636
type material: type strain of Vibrio japonicus
plasmid: p1
country: Japan: Inland Sea (Setonaikai), Ako City, Hyogo Prefecture
collection date: 2013-10

1824638
type: Taxonomy
SIO_000068: taxonomy

NP165_RS19930
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19930
old locus tag: NP165_19930
so part of: sequence
location: join(13228..13637,1..601)
location: region:1-13637:1
so has part: feature:13228-13637:1:exon
so has part: feature:1-601:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:13228-13637:1:exon

position:13228:1
position: 13228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-601:1:exon

position:601:1
position: 601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NP165_RS19930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19930
old locus tag: NP165_19930
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MEISNDIRARIIDAADQLYQDTNRERFPTVDQVRRAARADMNTTSAVMKEWRRQQTAAPAAVAVAIPERVQDAMSAALATVWSEAQELANESLTAAKQAWETERADADTMRAELADAYEQQAQELDTCKQQLTEAQAENMAAEQQRQEQAQELAETAARLHELERREQDAQQRIEELRAELKQEKAHAEQQATAHAQKLDEVQEQHRQELAAIREKLEQQTAAHADQLAAVQQQRDTAAQELATVKARAEAQQEAAADRQSAAQAQADQLAAELEKARQSAAEAREQAAGLAGQLEAITAQNKELMAAIQKAQPEKKATAPRKRTTAKKDAAQGEG
SIO_010081: NP165_RS19930
subclass of: SO_0000673
so part of: NP165_RS19930
location: join(13228..13637,1..601)
location: region:1-13637:1
so has part: feature:13228-13637:1:exon
so has part: feature:1-601:1:exon

WP_257086886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13228-13637:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-601:1:exon

NP165_RS19935
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19935
old locus tag: NP165_19935
so part of: sequence
location: complement(673..1140)
location: region:673-1140:-1
so has part: feature:673-1140:-1:exon
subclass of: SO_0000010

position:673:-1
position: 673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1140:-1
position: 1140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673-1140:-1:exon

NP165_RS19935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19935
old locus tag: NP165_19935
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADMTLNPIALLKTVVVIVAGVAIGYLVADKDRSQAVANKAAAAEKMEQRLGIQPREQSEGEQPRISRFDPDYIQQRVEENRAAREARQETRTFGERLADKVPTAPAEPDQATEASETPAPAQPERKTVTWGSLGADRQQQEREQRNTGTEQTSD
SIO_010081: NP165_RS19935
subclass of: SO_0000673
so part of: NP165_RS19935
location: complement(673..1140)
location: region:673-1140:-1
so has part: feature:673-1140:-1:exon

WP_257086887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:673-1140:-1:exon

NP165_RS19940
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19940
old locus tag: NP165_19940
so part of: sequence
location: complement(1133..2833)
location: region:1133-2833:-1
so has part: feature:1133-2833:-1:exon
subclass of: SO_0000010

position:1133:-1
position: 1133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2833:-1
position: 2833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1133-2833:-1:exon

NP165_RS19940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19940
old locus tag: NP165_19940
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system DNA-binding domain-containing protein
translation: MNVNFFGLFLRAFFRALGTALFAPWRLAGQLYMVFANGARYIWIEWLYMGVTAIGLGYVLHTGVNEGVGLAVFAWIMIAFTWLVVLDVASQMIEKIPDHGAAGELFGWLKWTPAGRAIPNPRTTPVSQHGKNYVRGAAVLDGAAVAAEQAASGENYALNIQLGGVAIPYQNEAEHFLISGKTGAGKTQAINAMLRTVRERGQVAIIADPAGGYLQRFGREHDIILNPFDDRNSNWSPFLEIEYENDVAMIAKAAIPDSNGSSSEWNKYAQTLFSELLRMQWKKGNHSVKELLKLATSATPKELYQLLKGTPAGQYVAPDNERMLGSIRSVMATYIAPWEYLPDQGDFSVRQWVRDVDQGKTDAWLYLTYMDNQLAMLRNLVSCWLELAIVEGLSLEEKPTRRLFYIMDELDSLGKVNSLRNGLTKLRKYGGVCVNGLQTIAQLRDTYGKEEAQTLLSCMSTKLLLAAGDSETAEYFSREIGDQEFQRENRSKGQSARIGELASSSENVSTEHRTERAVLASEITALPNLHGFLKPVGLPVMRITLEYRGMENLNPAFIRKEANNNG
SIO_010081: NP165_RS19940
subclass of: SO_0000673
so part of: NP165_RS19940
location: complement(1133..2833)
location: region:1133-2833:-1
so has part: feature:1133-2833:-1:exon

WP_257086888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1133-2833:-1:exon

NP165_RS19945
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19945
old locus tag: NP165_19945
so part of: sequence
location: complement(2849..3376)
location: region:2849-3376:-1
so has part: feature:2849-3376:-1:exon
subclass of: SO_0000010

position:2849:-1
position: 2849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3376:-1
position: 3376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2849-3376:-1:exon

NP165_RS19945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19945
old locus tag: NP165_19945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKKKIVAEIASRHGVLIREDDPAFYIVDLATMVIEEKAEEIREAVGKAEQSIPYLLDLKRKEIDEAAARILAASDDLETQRKQLAETLQQDVDNELRARVEDYTSQVMAAIKSTIRETVQDEMTNAALTIETAARELEQARHGLRRSQLQDLLWMGAVGTVGGLISLLFYVTFF
SIO_010081: NP165_RS19945
subclass of: SO_0000673
so part of: NP165_RS19945
location: complement(2849..3376)
location: region:2849-3376:-1
so has part: feature:2849-3376:-1:exon

WP_257086889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2849-3376:-1:exon

NP165_RS19950
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19950
old locus tag: NP165_19950
so part of: sequence
location: complement(3379..4161)
location: region:3379-4161:-1
so has part: feature:3379-4161:-1:exon
subclass of: SO_0000010

position:3379:-1
position: 3379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4161:-1
position: 4161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3379-4161:-1:exon

NP165_RS19950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19950
old locus tag: NP165_19950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019923820.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraL
translation: MTTKQAKATEATEKKESASMKNTVHFILQGKGGIGKSFISALLAQYIKTAHGSVSAFDIDQVNATLAAYDALKVTHIPVMKPDNNLDQRKFDNLVVAILETEEPCVIDSGANTFLPLLQYMVENDVFEMLKESGKRVYIHSIIGGGDNLRDTANGFHSIIKGISNTPVVLWLNEHFGTTDTNGKEFTETTLFKESEKSIAGLVTLHERNKDTFGLDIKEMTEARLTIEEAIATDRFNIMQKQRIKTVARDVFGQLEKIEF
SIO_010081: NP165_RS19950
subclass of: SO_0000673
so part of: NP165_RS19950
location: complement(3379..4161)
location: region:3379-4161:-1
so has part: feature:3379-4161:-1:exon

WP_257086890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3379-4161:-1:exon

NP165_RS19955
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19955
old locus tag: NP165_19955
so part of: sequence
location: complement(4174..4557)
location: region:4174-4557:-1
so has part: feature:4174-4557:-1:exon
subclass of: SO_0000010

position:4174:-1
position: 4174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4557:-1
position: 4557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4174-4557:-1:exon

NP165_RS19955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19955
old locus tag: NP165_19955
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDADSFLKQNAPRPRSAMADYWEDIKKLRAAGCTLEQVRSFLAANGVTVSVAAISKYIKRREAEGDTIAKAETPATAETPVERQKEAAPEPASSTTEKPAKPGKFEKKQSKTFGHSAKSDGINDLLK
SIO_010081: NP165_RS19955
subclass of: SO_0000673
so part of: NP165_RS19955
location: complement(4174..4557)
location: region:4174-4557:-1
so has part: feature:4174-4557:-1:exon

WP_257086891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4174-4557:-1:exon

NP165_RS19960
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19960
old locus tag: NP165_19960
so part of: sequence
location: 4836..5258
location: region:4836-5258:1
so has part: feature:4836-5258:1:exon
subclass of: SO_0000010

position:4836:1
position: 4836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5258:1
position: 5258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4836-5258:1:exon

NP165_RS19960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19960
old locus tag: NP165_19960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002933281.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKPGNEKLTESVALRLPEGLYNRLLGEATLQGVSLGQHIRQRLGEVGTAPIQSAVSLEKIERAAAAAAQIKKAKKIKSSDEKQRLIYLFNKTSNNVNQLAHRANLDYNAGTISEATYSNILDQLELMARYMKAVIKDVD
SIO_010081: NP165_RS19960
subclass of: SO_0000673
so part of: NP165_RS19960
location: 4836..5258
location: region:4836-5258:1
so has part: feature:4836-5258:1:exon

WP_257086892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4836-5258:1:exon

NP165_RS19965
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19965
old locus tag: NP165_19965
so part of: sequence
location: 5248..7770
location: region:5248-7770:1
so has part: feature:5248-7770:1:exon
subclass of: SO_0000010

position:5248:1
position: 5248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7770:1
position: 7770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5248-7770:1:exon

NP165_RS19965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19965
old locus tag: NP165_19965
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLIRVRGGESGIKEYLENGQKQGREFDRDTLDERVILSGDLELTDSVINGMGKQGEKYLHITLAFREDEISREALQNITDEFKEFAFSAYQDDEFNFYAEAHLPKIKSYNHRGTGEFIERKPHVHIVIPEQNLLSGHNLNPLGKVEQQTKFLEAFQEHINAKYGLASPKDHQRLELTGEHEMISRYKGDVFTGQGGEIKNELLAAVIKNNVNDWQQFRELAAEFGEVKERRGGEYLNIKPEGAAKGVNLKEPLFSREFIELPTAQKVQKLAAEQGGGYSTPGRPKPTPEQISERLKEWHEVRAREVRYLNSGNRKMYAEYKAADQERRREILADREQRFNAKWRTADYEQPGQHRAAFADLNNDLRTAGRHIESASRVDGGVEQAAGGIANRRTRRAVSAAIQRLNGNQTEIGQQREQRPERAARRQSDSVASQYRRDLAEQRQQQTGQQGEMVQIKRELDAARLLAATSQSHGVQPERYEITKGKDGSDRIKCGTRNLNVSDFLTKELNLPWQQAREILRDIYAEQQAQEPQKQHRARPRAELWAEYRDHWKPAQREAKGEAWEQQKERDKQRRGELRQQWYTRKNRIEGDKGLTRAQRRAALSVARMEKALADKALSEQIKDERQALKERFNKPPAEQFREFLTEKAQQGDQAALLELRRQADRPSQAEPGTPTVEGQQQEQAAPIMRRLSYQVDRRGDVHYSDDRGRRLFTDAGREVRTYQTKPQELETALRLAVQKFGPKLTVNGTDEYKKAVLDVVAASGMRVTFADPAMEQARQQREQAARRVQQFDQERNQAARKAAQEREQQRQKEREEQQQEKEREQRRSRSKGRDGGHGL
SIO_010081: NP165_RS19965
subclass of: SO_0000673
so part of: NP165_RS19965
location: 5248..7770
location: region:5248-7770:1
so has part: feature:5248-7770:1:exon

WP_257086893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5248-7770:1:exon

NP165_RS19970
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19970
old locus tag: NP165_19970
so part of: sequence
location: 7792..7977
location: region:7792-7977:1
so has part: feature:7792-7977:1:exon
subclass of: SO_0000010

position:7792:1
position: 7792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7977:1
position: 7977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7792-7977:1:exon

NP165_RS19970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19970
old locus tag: NP165_19970
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDRDIRRAEIEARLEHLYNEQHALETRKEMGEGYFDDFDQSTLDMVNTEITEMEALRNLA
SIO_010081: NP165_RS19970
subclass of: SO_0000673
so part of: NP165_RS19970
location: 7792..7977
location: region:7792-7977:1
so has part: feature:7792-7977:1:exon

WP_257086881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7792-7977:1:exon

NP165_RS19975
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19975
old locus tag: NP165_19975
so part of: sequence
location: 7991..8950
location: region:7991-8950:1
so has part: feature:7991-8950:1:exon
subclass of: SO_0000010

position:7991:1
position: 7991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8950:1
position: 8950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7991-8950:1:exon

NP165_RS19975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19975
old locus tag: NP165_19975
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELQEQISKEREKLAKLDAEKAQAEQQGDQAKVAELAEQVHRTHADIKALEAQADLLATYSGEEGHEPEAKEEMEVSSNSRTVYQRGGRATTFRSSIYDVADRMGMNATVTKTSVSVELDSTQRGMVSAGVTTLDDLAKNQQQSSSLDKMRRDFDRQHQGEEKEREREAEKLSQFVRGGTAERGQVQQSDRRQEQDAELSGSFGPARDYKPEPQREQEKAATHNQTPQAEQEAAQGVEIDGQHFRHMEDGDRVRGEIVNTVEMEDGSKFYAVEATGPDWETDRVLVPATEQEHEIGDRIRATMQADEVNTREDANELTR
SIO_010081: NP165_RS19975
subclass of: SO_0000673
so part of: NP165_RS19975
location: 7991..8950
location: region:7991-8950:1
so has part: feature:7991-8950:1:exon

WP_257086882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7991-8950:1:exon

NP165_RS19980
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19980
old locus tag: NP165_19980
so part of: sequence
location: 9256..9393
location: region:9256-9393:1
so has part: feature:9256-9393:1:exon
subclass of: SO_0000010

position:9256:1
position: 9256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9393:1
position: 9393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9256-9393:1:exon

NP165_RS19980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19980
old locus tag: NP165_19980
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAVALAAYITFSASLIVSVAAATEAATNRQAVEAFAAQVQEVRP
SIO_010081: NP165_RS19980
subclass of: SO_0000673
so part of: NP165_RS19980
location: 9256..9393
location: region:9256-9393:1
so has part: feature:9256-9393:1:exon

WP_257086883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9256-9393:1:exon

NP165_RS19985
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19985
old locus tag: NP165_19985
so part of: sequence
location: 9390..10226
location: region:9390-10226:1
so has part: feature:9390-10226:1:exon
subclass of: SO_0000010

position:9390:1
position: 9390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10226:1
position: 10226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9390-10226:1:exon

NP165_RS19985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19985
old locus tag: NP165_19985
inference: COORDINATES: protein motif:HMM:NF012318.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine protease
translation: MIRRLLAVLAAAVLATVATVAQANDWREQAADVLPSVVTVKTVDAATASRVMEIPGFRLGWATKATEYLNRWLTGWRPTPTDQTPTYDSTGFVVEIEGRSYVMTAAHSVEAMSRAGFTVITAEGEQHAAQLIGHEPRHRGADVALLAVPTLNRPALPFAAGTERGEPVAAVGGPAGFSESISAGIVSHPRRSWLATSRNNEVLRGGRDLIQIDARIYQGSSGGPVINQAGEVVGVVSFTHNPTGFGFLVNAKDAQQAAQRIATRCSTANPCDWLAVVQ
SIO_010081: NP165_RS19985
subclass of: SO_0000673
so part of: NP165_RS19985
location: 9390..10226
location: region:9390-10226:1
so has part: feature:9390-10226:1:exon

WP_257086884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9390-10226:1:exon

NP165_RS19990
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19990
old locus tag: NP165_19990
so part of: sequence
location: 10516..11142
location: region:10516-11142:1
so has part: feature:10516-11142:1:exon
subclass of: SO_0000010

position:10516:1
position: 10516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11142:1
position: 11142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10516-11142:1:exon

NP165_RS19990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19990
old locus tag: NP165_19990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918089.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: METRDTDTPDLFTGRMTFGYARVSTKAQDFGGQVEQLEAAGCNQVFAEKITARHQNRPELQKMLSKLRAGDVVIVTRLDRLARSTRDLLMLVEQIHEAGAGFKSLAEPWADTTTPAGKMVLTVFAGIAEFERALIKERTDIGRAEARKRGVYMGPPVKMTDDKRAALLELLASGKTPTEAARIFGIHRSTVYRITRQEEKKQLKEKAS
SIO_010081: NP165_RS19990
subclass of: SO_0000673
so part of: NP165_RS19990
location: 10516..11142
location: region:10516-11142:1
so has part: feature:10516-11142:1:exon

WP_257086885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10516-11142:1:exon

NP165_RS19995
type: Gene
subclass of: SO_0000704
RO_0002162: 1824638
locus tag: NP165_RS19995
old locus tag: NP165_19995
so part of: sequence
location: 11463..12308
location: region:11463-12308:1
so has part: feature:11463-12308:1:exon
subclass of: SO_0000010

position:11463:1
position: 11463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12308:1
position: 12308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11463-12308:1:exon

NP165_RS19995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1824638
locus tag: NP165_RS19995
old locus tag: NP165_19995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004167349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MALIDASARIMEAPPTGDDMAFNHGILCQVGLPRSKVNGTSFLRRSGDAWVHVQAGLLDEGSGPVEQPVPYGAMPRLALAWLSTYAVRHKTPEIHIGESAAEFLRLMGKDAQGARYKTLRTQMHALAACRLQMGFKGRTYSAQPVSQFDAWINDQESDQRPLWPGTLCLSADFYNILMESPVPLDNRALDALSGSALALDIYCWLAHRLHRIEGRPVTLHWRSIREQFAQEYQGKDADKDFKKRFLPALHNVLMVYPDAKVKQVTGGLLLMPSPPPVPYKG
SIO_010081: NP165_RS19995
subclass of: SO_0000673
so part of: NP165_RS19995
location: 11463..12308
location: region:11463-12308:1
so has part: feature:11463-12308:1:exon

WP_257086894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11463-12308:1:exon