Vibrio japonicus strain JCM 31412 plasmid p1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Complete genome of Vibrio japonicus strain JCM 31412T and phylogenomic assessment of the Nereis clade of the genus Vibrio
Submitted (29-JUL-2022) Biology, Southern Oregon University Biology Department, 1250 Siskiyou Blvd, Ashland, Oregon 97520-5001, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP102098.1.\nBacteria and source DNA available from Belgian Co-ordinated\nCollection of Micro-Organisms BCCM/LMG (LMG 29636).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.15.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 140.0x\nSequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/07/2022 13:16:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,999\nCDSs (total) :: 3,840\nGenes (coding) :: 3,802\nCDSs (with protein) :: 3,802\nGenes (RNA) :: 159\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 121\nncRNAs :: 4\nPseudo Genes (total) :: 38\nCDSs (without protein) :: 38\nPseudo Genes (ambiguous residues) :: 0 of 38\nPseudo Genes (frameshifted) :: 14 of 38\nPseudo Genes (incomplete) :: 27 of 38\nPseudo Genes (internal stop) :: 12 of 38\nPseudo Genes (multiple problems) :: 12 of 38\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Japan: Inland Sea (Setonaikai), Ako City, Hyogo Prefecture
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021897.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019923820.1
COORDINATES: similar to AA sequence:RefSeq:WP_002933281.1
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: similar to AA sequence:RefSeq:WP_005918089.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167349.1