Skermanella rosea strain KEMB 2255-458 plasmid pSR-2, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Skermanella.
Submitted (28-OCT-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
Submitted (26-JAN-2021) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP086113.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v0.4.9b\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 917.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/27/2022 06:30:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,311\nCDSs (total) :: 7,224\nGenes (coding) :: 7,108\nCDSs (with protein) :: 7,108\nGenes (RNA) :: 87\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 5\nPseudo Genes (total) :: 116\nCDSs (without protein) :: 116\nPseudo Genes (ambiguous residues) :: 0 of 116\nPseudo Genes (frameshifted) :: 24 of 116\nPseudo Genes (incomplete) :: 101 of 116\nPseudo Genes (internal stop) :: 10 of 116\nPseudo Genes (multiple problems) :: 17 of 116\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019643794.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019643792.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014241863.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018719543.1
COORDINATES: similar to AA sequence:RefSeq:WP_018719542.1
COORDINATES: similar to AA sequence:RefSeq:WP_018719541.1
COORDINATES: similar to AA sequence:RefSeq:WP_019643787.1
COORDINATES: similar to AA sequence:RefSeq:WP_019643785.1
COORDINATES: similar to AA sequence:RefSeq:WP_018005878.1
COORDINATES: similar to AA sequence:RefSeq:WP_019643783.1
COORDINATES: similar to AA sequence:RefSeq:WP_014249660.1
COORDINATES: protein motif:HMM:NF018993.2
COORDINATES: protein motif:HMM:NF015317.2
COORDINATES: protein motif:HMM:NF021600.2
COORDINATES: protein motif:HMM:NF015720.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004306467.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012568528.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017238449.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013813008.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188636.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011562548.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973447.1
COORDINATES: protein motif:HMM:NF017522.2
COORDINATES: protein motif:HMM:NF013736.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_012484424.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: similar to AA sequence:RefSeq:WP_018097878.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003525806.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969380.1
COORDINATES: similar to AA sequence:RefSeq:WP_008959724.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018097874.1
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019529430.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430786.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169049.1
COORDINATES: similar to AA sequence:RefSeq:WP_016453645.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_004566625.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169045.1
COORDINATES: similar to AA sequence:RefSeq:WP_014995658.1
COORDINATES: similar to AA sequence:RefSeq:WP_003459778.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018900982.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012333385.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333386.1
COORDINATES: similar to AA sequence:RefSeq:WP_006912849.1
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015669520.1
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011952463.1
COORDINATES: similar to AA sequence:RefSeq:WP_018900979.1
COORDINATES: similar to AA sequence:RefSeq:WP_011158047.1
COORDINATES: similar to AA sequence:RefSeq:WP_009208031.1
COORDINATES: similar to AA sequence:RefSeq:WP_009208030.1
COORDINATES: similar to AA sequence:RefSeq:WP_009208029.1
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: similar to AA sequence:RefSeq:WP_007699842.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020052502.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004676084.1
COORDINATES: similar to AA sequence:RefSeq:WP_014187835.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018245891.1
COORDINATES: similar to AA sequence:RefSeq:WP_006514203.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003118429.1
GO:0050661 - NADP binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012049982.1
COORDINATES: similar to AA sequence:RefSeq:WP_002930509.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019561767.1
COORDINATES: similar to AA sequence:RefSeq:WP_014187985.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969406.1
COORDINATES: similar to AA sequence:RefSeq:WP_014187983.1
COORDINATES: similar to AA sequence:RefSeq:WP_013744333.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012975892.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603845.1
COORDINATES: similar to AA sequence:RefSeq:WP_013714837.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016843058.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008232156.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005862544.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011840081.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007257193.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019400749.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007010520.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: similar to AA sequence:RefSeq:WP_019996613.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_013850332.1
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: similar to AA sequence:RefSeq:WP_009763082.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_009763083.1
GO:0018835 - carbon phosphorus lyase activity [Evidence IEA]
phosphonate C-P lyase system protein PhnK
COORDINATES: similar to AA sequence:RefSeq:WP_008594908.1
phosphonate C-P lyase system protein PhnL
COORDINATES: similar to AA sequence:RefSeq:WP_019996619.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019996620.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008889692.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_009211208.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_017878817.1
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015242251.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019404342.1
COORDINATES: similar to AA sequence:RefSeq:WP_003533746.1
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017988299.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015242302.1
COORDINATES: similar to AA sequence:RefSeq:WP_006335124.1
COORDINATES: similar to AA sequence:RefSeq:WP_020176826.1
COORDINATES: similar to AA sequence:RefSeq:WP_012830705.1
COORDINATES: similar to AA sequence:RefSeq:WP_014748035.1
COORDINATES: similar to AA sequence:RefSeq:WP_015338678.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014994812.1
COORDINATES: protein motif:HMM:NF019149.2
recombinase zinc beta ribbon domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012973655.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014249967.1
COORDINATES: similar to AA sequence:RefSeq:WP_014752063.1
COORDINATES: similar to AA sequence:RefSeq:WP_007916149.1
COORDINATES: similar to AA sequence:RefSeq:WP_009176005.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009176120.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007242.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_020022113.1
COORDINATES: similar to AA sequence:RefSeq:WP_011456896.1
COORDINATES: similar to AA sequence:RefSeq:WP_014187982.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012331176.1
COORDINATES: similar to AA sequence:RefSeq:WP_012258129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331174.1
COORDINATES: similar to AA sequence:RefSeq:WP_018262358.1
COORDINATES: similar to AA sequence:RefSeq:WP_013744338.1
COORDINATES: similar to AA sequence:RefSeq:WP_010997363.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467586.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF013080.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015916807.1
COORDINATES: similar to AA sequence:RefSeq:WP_003895797.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_018454316.1
COORDINATES: similar to AA sequence:RefSeq:WP_017961854.1
COORDINATES: similar to AA sequence:RefSeq:WP_011085479.1
COORDINATES: similar to AA sequence:RefSeq:WP_018645167.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF010411.0
two-component system VirA-like sensor kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007183821.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018325064.1
COORDINATES: similar to AA sequence:RefSeq:WP_014507618.1
COORDINATES: similar to AA sequence:RefSeq:WP_007557785.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006697891.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658490.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_015895484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007041000.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_012910773.1
GO:0003674 - molecular_function [Evidence IEA]
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_004680427.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_018010217.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_020506193.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013817557.1
type VI secretion system contractile sheath small subunit
COORDINATES: protein motif:HMM:TIGR03363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012974390.1
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:TIGR03354.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: protein motif:HMM:NF038228.1
type IVB secretion system protein IcmH/DotU
COORDINATES: protein motif:HMM:TIGR03348.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:NF021393.2
type VI secretion system-associated protein TagF
COORDINATES: protein motif:HMM:NF023273.2
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_003177222.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018009388.1
COORDINATES: protein motif:HMM:TIGR03361.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF037816.2
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_018269005.1
member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009505262.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_003929947.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017956998.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011056255.1
COORDINATES: similar to AA sequence:RefSeq:WP_013394781.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699196.1
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:NP_309365.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_076611116.1
programmed frameshift; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016230.2
COORDINATES: similar to AA sequence:RefSeq:WP_014332907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199286.1
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF019997.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019644506.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF015118.2
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004730248.1
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: protein motif:HMM:NF024975.2
COORDINATES: protein motif:HMM:NF016040.2
GO:0050385 - ureidoglycolate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013169038.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390019.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169036.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390021.1
COORDINATES: similar to AA sequence:RefSeq:WP_019750764.1
COORDINATES: similar to AA sequence:RefSeq:WP_017736605.1
COORDINATES: similar to AA sequence:RefSeq:WP_013169032.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008755889.1
COORDINATES: similar to AA sequence:RefSeq:WP_018181377.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390027.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654167.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973653.1
COORDINATES: similar to AA sequence:RefSeq:WP_012386207.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681589.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012566118.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018273947.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611132.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611693.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_016848316.1
COORDINATES: similar to AA sequence:RefSeq:WP_012382821.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007437881.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242639.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: protein motif:HMM:NF012870.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018700523.1
COORDINATES: similar to AA sequence:RefSeq:WP_018700529.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020681443.1
COORDINATES: similar to AA sequence:RefSeq:WP_008960018.1
COORDINATES: similar to AA sequence:RefSeq:WP_009096962.1
COORDINATES: similar to AA sequence:RefSeq:WP_020681440.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018700524.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014496498.1
COORDINATES: similar to AA sequence:RefSeq:WP_017524116.1
COORDINATES: similar to AA sequence:RefSeq:WP_008960026.1
COORDINATES: similar to AA sequence:RefSeq:WP_018641320.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917326.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558218.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010160565.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_008906460.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF037627.2
COORDINATES: similar to AA sequence:RefSeq:WP_014261495.1
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_018289909.1
COORDINATES: similar to AA sequence:RefSeq:WP_011100796.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037997.1
GO:0015114 - phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0035435 - phosphate ion transmembrane transport [Evidence IEA]; GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014719.2
COORDINATES: similar to AA sequence:RefSeq:WP_018389489.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: protein motif:HMM:NF019260.2
COORDINATES: similar to AA sequence:RefSeq:WP_009210130.1
COORDINATES: protein motif:HMM:NF016807.2
COORDINATES: similar to AA sequence:RefSeq:WP_018098306.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: similar to AA sequence:RefSeq:WP_009813526.1
COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012523009.1
COORDINATES: similar to AA sequence:RefSeq:WP_013066482.1
COORDINATES: protein motif:HMM:NF019236.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_017905237.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199648.1
COORDINATES: similar to AA sequence:RefSeq:WP_014197686.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199988.1
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006610759.1
COORDINATES: similar to AA sequence:RefSeq:WP_020388657.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492984.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731483.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017774927.1
COORDINATES: similar to AA sequence:RefSeq:WP_007863376.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531510.1
COORDINATES: similar to AA sequence:RefSeq:WP_019998796.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012250766.1
COORDINATES: similar to AA sequence:RefSeq:WP_017263430.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210237.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008891997.1
COORDINATES: similar to AA sequence:RefSeq:WP_009337705.1
COORDINATES: similar to AA sequence:RefSeq:WP_014530844.1
COORDINATES: similar to AA sequence:RefSeq:WP_008298792.1
COORDINATES: similar to AA sequence:RefSeq:WP_019014472.1
COORDINATES: similar to AA sequence:RefSeq:WP_014239566.1
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009148128.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012375987.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0043751 - polyphosphate:AMP phosphotransferase activity [Evidence IEA]
GO:0006797 - polyphosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_015927485.1
COORDINATES: similar to AA sequence:RefSeq:WP_007669542.1
COORDINATES: similar to AA sequence:RefSeq:WP_007669541.1
COORDINATES: similar to AA sequence:RefSeq:WP_018726311.1
GO:0008171 - O-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016906.2
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: similar to AA sequence:RefSeq:WP_006977413.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
GO:0043163 - cell envelope organization [Evidence IEA]
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013569110.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018185253.1
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01007.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_007436432.1
COORDINATES: similar to AA sequence:RefSeq:WP_011664915.1
COORDINATES: protein motif:HMM:NF016228.2
COORDINATES: protein motif:HMM:NF026018.2
polysaccharide biosynthesis C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:NF014686.2
COORDINATES: similar to AA sequence:RefSeq:WP_019996000.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910403.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014394634.1
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009763887.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495477.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016260.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
translocation/assembly module TamB domain-containing protein
COORDINATES: protein motif:HMM:NF016236.2
COORDINATES: similar to AA sequence:RefSeq:WP_014199315.1
COORDINATES: similar to AA sequence:RefSeq:WP_013946904.1
COORDINATES: similar to AA sequence:RefSeq:WP_020085402.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018954449.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199311.1
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
glycine zipper 2TM domain-containing protein
COORDINATES: protein motif:HMM:NF024600.2
COORDINATES: similar to AA sequence:RefSeq:WP_012590081.1
COORDINATES: protein motif:HMM:NF018960.2
COORDINATES: protein motif:HMM:NF015669.2
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_014213339.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008138467.1
COORDINATES: similar to AA sequence:RefSeq:WP_012631279.1
COORDINATES: similar to AA sequence:RefSeq:WP_015667533.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012384837.1
COORDINATES: similar to AA sequence:RefSeq:WP_018870270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007089796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568362.1
GO:0008773 - [protein-PII] uridylyltransferase activity [Evidence IEA]
DUF294 nucleotidyltransferase-like domain-containing protein
COORDINATES: protein motif:HMM:NF012245.2
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_011599308.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005865.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: similar to AA sequence:RefSeq:WP_019017299.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012973830.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF021134.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749201.1
COORDINATES: similar to AA sequence:RefSeq:WP_018972242.1
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015933161.1
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: protein motif:HMM:NF015550.2
GO:0051276 - chromosome organization [Evidence IEA]
COORDINATES: protein motif:HMM:NF038117.1
COORDINATES: protein motif:HMM:NF015588.2
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF019886.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012758002.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531451.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199717.1
COORDINATES: similar to AA sequence:RefSeq:WP_012757962.1
COORDINATES: similar to AA sequence:RefSeq:WP_002632522.1
COORDINATES: similar to AA sequence:RefSeq:WP_018963941.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391394.1
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019427413.1
COORDINATES: similar to AA sequence:RefSeq:WP_014368896.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978148.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198853.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198852.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014753147.1
COORDINATES: protein motif:HMM:NF013206.2
gamma-glutamyltransferase family protein
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_014197264.1
COORDINATES: protein motif:HMM:NF020918.2
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: similar to AA sequence:RefSeq:WP_010107599.1
COORDINATES: similar to AA sequence:RefSeq:WP_003580383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011995749.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007819888.1
COORDINATES: similar to AA sequence:RefSeq:WP_007532097.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192898.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011157545.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014188770.1
COORDINATES: similar to AA sequence:RefSeq:WP_003540215.1
COORDINATES: similar to AA sequence:RefSeq:WP_013481004.1