Psilocybe cubensis strain MGC-MH-2018 mitochondrion, complete sequence, whole genome shotgun sequence.
type: Entry
definition: Psilocybe cubensis strain MGC-MH-2018 mitochondrion, complete sequence, whole genome shotgun sequence.
sequence version: NW_025952838.1
sequence date: 2022-05-06
sequence: sequence
division: CON
label: NW_025952838.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA835128
dblink: SAMN17831733
keyword: WGS
keyword: RefSeq
source: mitochondrion Psilocybe cubensis
organism: Psilocybe cubensis
taxonomy: Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Strophariaceae; Psilocybe.
reference: 1
reference: 2
reference: 3
reference: 4
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM029846.\nGenome was annotated with FunAnnotate v. 1.8.4.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-SEP-2021\nAssembly Method :: Peregrine v. 2021-09-01\nAssembly Name :: MGC_Penvy_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio HiFi\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 191520
topology: circular
so has quality: SO_0000988
location: 1..191520
location: region:1-191520:1
RO_0002162: 181762

NW_025952838
type: RefSeq
SIO_000068: refseq

PRJNA835128
type: BioProject
SIO_000068: bioproject

SAMN17831733
type: BioSample
SIO_000068: biosample

1
title: Psilocybe cubensis genome
author: Mckernan, K.J.
author: Crawford, S.
author: Trippe, A.
author: Kane, L.T.
author: Mclaughlin, S.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (05-MAY-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Mckernan, K.J.
author: Crawford, S.
author: Trippe, A.
author: Kane, L.T.
author: Mclaughlin, S.
journal: Submitted (19-OCT-2021) R&D, Medicinal Genomics, 100 Cummings Center, Beverly, MA 01915, USA

4
title: Direct Submission
author: Mckernan, K.J.
author: Crawford, S.
author: Trippe, A.
author: Kane, L.T.
author: Mclaughlin, S.
journal: Submitted (23-FEB-2021) R&D, Medicinal Genomics, 100 Cummings Center, Beverly, MA 01915, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191520:1
position: 191520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-191520:1:source
so part of: sequence
organism: Psilocybe cubensis
organelle: mitochondrion
mol type: genomic DNA
strain: MGC-MH-2018
isolation source: stem
country: USA:Massachusetts
collection date: 2018-01-14

181762
type: Taxonomy
SIO_000068: taxonomy

JR316_0013459
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013459
so part of: sequence
location: complement(<7349..>7746)
location: region:7349-7746:-1
so has part: feature:7349-7746:-1:exon
subclass of: SO_0000010

71979779
type: Gene
SIO_000068: ncbigene

position:7349:-1
position: 7349
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:7746:-1
position: 7746
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7349-7746:-1:exon

JR316_0013459
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 181762
locus tag: JR316_0013459
product: uncharacterized protein
SIO_010081: JR316_0013459
subclass of: SO_0000673
so part of: JR316_0013459
location: complement(join(<7349..7540,7735..>7746))
location: region:7349-7746:-1
so has part: feature:7735-7746:-1:exon
so has part: feature:7349-7540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7735-7746:-1:exon

position:7735:-1
position: 7735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7349-7540:-1:exon

position:7540:-1
position: 7540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

JR316_0013459
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181762
locus tag: JR316_0013459
codon start: 1
transl table: 4
product: hypothetical protein
translation: MPNFGNKISRVARVARVARVARVARVARVARVARVARVARVARVARVARVARVARVAVARKNNCLIR
SIO_010081: JR316_0013459
subclass of: SO_0000673
so part of: JR316_0013459
location: complement(join(7349..7540,7735..7746))
location: region:7349-7746:-1
so has part: feature:7735-7746:-1:exon
so has part: feature:7349-7540:-1:exon

XP_047741857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7735-7746:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7349-7540:-1:exon

JR316_0013460
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013460
so part of: sequence
location: 16045..16116
location: region:16045-16116:1
so has part: feature:16045-16116:1:exon
subclass of: SO_0000663

71979780
type: Gene
SIO_000068: ncbigene

position:16045:1
position: 16045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16116:1
position: 16116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16045-16116:1:exon

JR316_0013460
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013460
product: tRNA-Met
SIO_010081: JR316_0013460
subclass of: SO_0000673
so part of: JR316_0013460
location: 16045..16116
location: region:16045-16116:1
so has part: feature:16045-16116:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16045-16116:1:exon

JR316_0013461
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013461
so part of: sequence
location: complement(19909..19981)
location: region:19909-19981:-1
so has part: feature:19909-19981:-1:exon
subclass of: SO_0000663

71979781
type: Gene
SIO_000068: ncbigene

position:19909:-1
position: 19909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19981:-1
position: 19981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19909-19981:-1:exon

JR316_0013461
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013461
product: tRNA-Asp
SIO_010081: JR316_0013461
subclass of: SO_0000673
so part of: JR316_0013461
location: complement(19909..19981)
location: region:19909-19981:-1
so has part: feature:19909-19981:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19909-19981:-1:exon

JR316_0013462
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013462
so part of: sequence
location: complement(30626..30712)
location: region:30626-30712:-1
so has part: feature:30626-30712:-1:exon
subclass of: SO_0000663

71979782
type: Gene
SIO_000068: ncbigene

position:30626:-1
position: 30626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30712:-1
position: 30712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30626-30712:-1:exon

JR316_0013462
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013462
product: tRNA-Ser
SIO_010081: JR316_0013462
subclass of: SO_0000673
so part of: JR316_0013462
location: complement(30626..30712)
location: region:30626-30712:-1
so has part: feature:30626-30712:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30626-30712:-1:exon

JR316_0013464
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013464
so part of: sequence
location: complement(68694..68765)
location: region:68694-68765:-1
so has part: feature:68694-68765:-1:exon
subclass of: SO_0000663

71979783
type: Gene
SIO_000068: ncbigene

position:68694:-1
position: 68694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68765:-1
position: 68765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68694-68765:-1:exon

JR316_0013464
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013464
product: tRNA-Met
SIO_010081: JR316_0013464
subclass of: SO_0000673
so part of: JR316_0013464
location: complement(68694..68765)
location: region:68694-68765:-1
so has part: feature:68694-68765:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68694-68765:-1:exon

JR316_0013465
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013465
so part of: sequence
location: 95087..95157
location: region:95087-95157:1
so has part: feature:95087-95157:1:exon
subclass of: SO_0000663

71979784
type: Gene
SIO_000068: ncbigene

position:95087:1
position: 95087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95157:1
position: 95157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95087-95157:1:exon

JR316_0013465
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013465
product: tRNA-Gly
SIO_010081: JR316_0013465
subclass of: SO_0000673
so part of: JR316_0013465
location: 95087..95157
location: region:95087-95157:1
so has part: feature:95087-95157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95087-95157:1:exon

JR316_0013466
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013466
so part of: sequence
location: 95174..95246
location: region:95174-95246:1
so has part: feature:95174-95246:1:exon
subclass of: SO_0000663

71979785
type: Gene
SIO_000068: ncbigene

position:95174:1
position: 95174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95246:1
position: 95246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95174-95246:1:exon

JR316_0013466
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013466
product: tRNA-Met
SIO_010081: JR316_0013466
subclass of: SO_0000673
so part of: JR316_0013466
location: 95174..95246
location: region:95174-95246:1
so has part: feature:95174-95246:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95174-95246:1:exon

JR316_0013467
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013467
so part of: sequence
location: 96344..96415
location: region:96344-96415:1
so has part: feature:96344-96415:1:exon
subclass of: SO_0000663

71979786
type: Gene
SIO_000068: ncbigene

position:96344:1
position: 96344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96415:1
position: 96415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96344-96415:1:exon

JR316_0013467
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013467
product: tRNA-Thr
SIO_010081: JR316_0013467
subclass of: SO_0000673
so part of: JR316_0013467
location: 96344..96415
location: region:96344-96415:1
so has part: feature:96344-96415:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96344-96415:1:exon

JR316_0013468
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013468
so part of: sequence
location: 111308..111379
location: region:111308-111379:1
so has part: feature:111308-111379:1:exon
subclass of: SO_0000663

71979787
type: Gene
SIO_000068: ncbigene

position:111308:1
position: 111308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111379:1
position: 111379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111308-111379:1:exon

JR316_0013468
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013468
product: tRNA-Phe
SIO_010081: JR316_0013468
subclass of: SO_0000673
so part of: JR316_0013468
location: 111308..111379
location: region:111308-111379:1
so has part: feature:111308-111379:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:111308-111379:1:exon

JR316_0013469
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013469
so part of: sequence
location: 113009..113080
location: region:113009-113080:1
so has part: feature:113009-113080:1:exon
subclass of: SO_0000663

71979788
type: Gene
SIO_000068: ncbigene

position:113009:1
position: 113009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113080:1
position: 113080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113009-113080:1:exon

JR316_0013469
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013469
product: tRNA-Lys
SIO_010081: JR316_0013469
subclass of: SO_0000673
so part of: JR316_0013469
location: 113009..113080
location: region:113009-113080:1
so has part: feature:113009-113080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113009-113080:1:exon

JR316_0013470
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013470
so part of: sequence
location: 119564..119636
location: region:119564-119636:1
so has part: feature:119564-119636:1:exon
subclass of: SO_0000663

71979789
type: Gene
SIO_000068: ncbigene

position:119564:1
position: 119564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119636:1
position: 119636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119564-119636:1:exon

JR316_0013470
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013470
product: tRNA-Met
SIO_010081: JR316_0013470
subclass of: SO_0000673
so part of: JR316_0013470
location: 119564..119636
location: region:119564-119636:1
so has part: feature:119564-119636:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119564-119636:1:exon

JR316_0013471
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013471
so part of: sequence
location: 153609..153681
location: region:153609-153681:1
so has part: feature:153609-153681:1:exon
subclass of: SO_0000663

71979790
type: Gene
SIO_000068: ncbigene

position:153609:1
position: 153609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153681:1
position: 153681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153609-153681:1:exon

JR316_0013471
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013471
product: tRNA-Asn
SIO_010081: JR316_0013471
subclass of: SO_0000673
so part of: JR316_0013471
location: 153609..153681
location: region:153609-153681:1
so has part: feature:153609-153681:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153609-153681:1:exon

JR316_0013472
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013472
so part of: sequence
location: 156201..156283
location: region:156201-156283:1
so has part: feature:156201-156283:1:exon
subclass of: SO_0000663

71979791
type: Gene
SIO_000068: ncbigene

position:156201:1
position: 156201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156283:1
position: 156283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156201-156283:1:exon

JR316_0013472
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013472
product: tRNA-Tyr
SIO_010081: JR316_0013472
subclass of: SO_0000673
so part of: JR316_0013472
location: 156201..156283
location: region:156201-156283:1
so has part: feature:156201-156283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:156201-156283:1:exon

JR316_0013473
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013473
so part of: sequence
location: 156657..156730
location: region:156657-156730:1
so has part: feature:156657-156730:1:exon
subclass of: SO_0000663

71979792
type: Gene
SIO_000068: ncbigene

position:156657:1
position: 156657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156730:1
position: 156730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156657-156730:1:exon

JR316_0013473
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013473
product: tRNA-Pro
SIO_010081: JR316_0013473
subclass of: SO_0000673
so part of: JR316_0013473
location: 156657..156730
location: region:156657-156730:1
so has part: feature:156657-156730:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:156657-156730:1:exon

JR316_0013474
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013474
so part of: sequence
location: 159375..159447
location: region:159375-159447:1
so has part: feature:159375-159447:1:exon
subclass of: SO_0000663

71979793
type: Gene
SIO_000068: ncbigene

position:159375:1
position: 159375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159447:1
position: 159447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159375-159447:1:exon

JR316_0013474
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013474
product: tRNA-Arg
SIO_010081: JR316_0013474
subclass of: SO_0000673
so part of: JR316_0013474
location: 159375..159447
location: region:159375-159447:1
so has part: feature:159375-159447:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:159375-159447:1:exon

JR316_0013475
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013475
so part of: sequence
location: 161689..161760
location: region:161689-161760:1
so has part: feature:161689-161760:1:exon
subclass of: SO_0000663

71979794
type: Gene
SIO_000068: ncbigene

position:161689:1
position: 161689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161760:1
position: 161760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161689-161760:1:exon

JR316_0013475
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013475
product: tRNA-Met
SIO_010081: JR316_0013475
subclass of: SO_0000673
so part of: JR316_0013475
location: 161689..161760
location: region:161689-161760:1
so has part: feature:161689-161760:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:161689-161760:1:exon

JR316_0013476
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013476
so part of: sequence
location: complement(165553..165625)
location: region:165553-165625:-1
so has part: feature:165553-165625:-1:exon
subclass of: SO_0000663

71979795
type: Gene
SIO_000068: ncbigene

position:165553:-1
position: 165553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165625:-1
position: 165625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165553-165625:-1:exon

JR316_0013476
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013476
product: tRNA-Asp
SIO_010081: JR316_0013476
subclass of: SO_0000673
so part of: JR316_0013476
location: complement(165553..165625)
location: region:165553-165625:-1
so has part: feature:165553-165625:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:165553-165625:-1:exon

JR316_0013477
type: Gene
subclass of: SO_0000704
RO_0002162: 181762
locus tag: JR316_0013477
so part of: sequence
location: complement(176270..176356)
location: region:176270-176356:-1
so has part: feature:176270-176356:-1:exon
subclass of: SO_0000663

71979796
type: Gene
SIO_000068: ncbigene

position:176270:-1
position: 176270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:176356:-1
position: 176356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176270-176356:-1:exon

JR316_0013477
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181762
locus tag: JR316_0013477
product: tRNA-Ser
SIO_010081: JR316_0013477
subclass of: SO_0000673
so part of: JR316_0013477
location: complement(176270..176356)
location: region:176270-176356:-1
so has part: feature:176270-176356:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:176270-176356:-1:exon