Haloplanus rallus strain MBLA0036 plasmid pMBLA003601, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloplanus.
Complete genome sequence of Haloplanus rallus MBLA0036
Submitted (06-DEC-2018) Research Group of Gut Microbiome, Korea Food Research Institute, 245, Nongsaengmyeong-ro, Iseo-myeon, Wanju_Gun, Jeollabuk-do 565-851, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP034344.1.\nBacteria and source DNA available from Research Group of Gut\nMicrobiome, Korea Food Research Institute, 245, Nongsaengmyeong-ro,\nIseo-myeon, Wanju_Gun, Jeollabuk-do, 565-851, Republic of Korea.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 276.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/03/2023 02:39:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,697\nCDSs (total) :: 3,641\nGenes (coding) :: 3,574\nCDSs (with protein) :: 3,574\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 24 of 67\nPseudo Genes (incomplete) :: 48 of 67\nPseudo Genes (internal stop) :: 10 of 67\nPseudo Genes (multiple problems) :: 12 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
bacterio-opsin activator domain-containing protein
COORDINATES: protein motif:HMM:NF024603.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004595762.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
COORDINATES: similar to AA sequence:RefSeq:WP_015302104.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364407.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364410.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222170.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053428.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053427.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310233.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035055.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276504.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006183453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186970.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183451.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825399.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011224910.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594496.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183441.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183439.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594491.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183436.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004595552.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053352.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014051455.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289741.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035182.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299360.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514844.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865877.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053326.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594467.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743304.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053324.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053323.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458794.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594458.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594457.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053516.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825236.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: protein motif:HMM:NF021539.2
COORDINATES: similar to AA sequence:RefSeq:WP_008364390.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364388.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364385.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111107.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051284.1
COORDINATES: similar to AA sequence:RefSeq:WP_008441530.1
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008849781.1
COORDINATES: similar to AA sequence:RefSeq:WP_015909857.1
COORDINATES: similar to AA sequence:RefSeq:WP_004975435.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651869.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299307.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008007340.1
COORDINATES: similar to AA sequence:RefSeq:WP_014052471.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762253.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762252.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762251.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008893611.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594617.1
COORDINATES: similar to AA sequence:RefSeq:WP_008848933.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007695984.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222410.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378262.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594547.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004592052.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517784.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592043.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592042.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222439.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517780.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517779.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594534.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004517776.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517771.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183460.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_004043413.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451818.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004592251.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517742.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458767.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183343.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053404.1
COORDINATES: protein motif:HMM:NF014250.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524575.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762257.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595561.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516401.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048548.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660078.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538671.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660080.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012660081.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660082.1
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008443153.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458668.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344000.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159055.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648748.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
Replication protein A protects and stabilize the intermediate ssDNA that is generated by the unwinding action of a DNA helicase at the replication fork. In addition, SSBs prevent the formation of secondary structures by single-stranded template DNA; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008366514.1
COORDINATES: similar to AA sequence:RefSeq:WP_005041349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571437.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180950.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006671866.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_008001555.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_006087988.1
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008847005.1
COORDINATES: similar to AA sequence:RefSeq:WP_004963273.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044077.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012943601.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825312.1
COORDINATES: similar to AA sequence:RefSeq:WP_005555314.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_015762250.1
GO:0006811 - monoatomic ion transport [Evidence IEA]