Neisseria musculi strain NW831 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.
Complete Genome Sequence of mouse commensal type strain Neisseria musculi
Submitted (21-SEP-2020) Department of Biological Sciences, Ohio University, 7 Depot Street, Life Sciences Building 233, Athens, OH 45701, USA
Submitted (19-AUG-2020) Department of Biological Sciences, Ohio University, 7 Depot Street, Life Sciences Building 233, Athens, OH 45701, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP060415.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 8.0, HGAP v. 4.0, SPAdes v. 3.11.1\nGenome Coverage :: 1297.52x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 04:24:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,982\nCDSs (total) :: 2,912\nGenes (coding) :: 2,747\nCDSs (with protein) :: 2,747\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 165\nCDSs (without protein) :: 165\nPseudo Genes (ambiguous residues) :: 0 of 165\nPseudo Genes (frameshifted) :: 114 of 165\nPseudo Genes (incomplete) :: 67 of 165\nPseudo Genes (internal stop) :: 59 of 165\nPseudo Genes (multiple problems) :: 67 of 165\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013789853.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010100874.1
COORDINATES: protein motif:HMM:NF019884.2
COORDINATES: similar to AA sequence:RefSeq:WP_003690219.1
COORDINATES: protein motif:HMM:NF018152.2