Salarias fasciatus mitochondrion, complete genome.
type: Entry
definition: Salarias fasciatus mitochondrion, complete genome.
sequence version: NC_004412.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_004412.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Salarias fasciatus (jewelled blenny)
organism: Salarias fasciatus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Blennioidei; Blenniidae; Salariinae; Salarias.
reference: 1
references: 12470944
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to AP004451.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16496
topology: circular
so has quality: SO_0000988
location: 1..16496
location: region:1-16496:1
RO_0002162: 181472

NC_004412
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences
author: Miya, M.
author: Takeshima, H.
author: Endo, H.
author: Ishiguro, N.B.
author: Inoue, J.G.
author: Mukai, T.
author: Satoh, T.P.
author: Yamaguchi, M.
author: Kawaguchi, A.
author: Mabuchi, K.
author: Shirai, S.M.
author: Nishida, M.
journal: Mol. Phylogenet. Evol.
volume: 26
issue: 1
pages: 121-138
year: 2003
pubmed: 12470944

12470944
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (23-SEP-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Miya, M.
journal: Submitted (12-DEC-2001) Masaki Miya, Natural History Museum & Institute, Chiba, Department of Zoology; 955-2 Aoba-cho, Chuo-ku, Chiba, Chiba 260-8682, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16496:1
position: 16496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16496:1:source
so part of: sequence
organism: Salarias fasciatus
organelle: mitochondrion
mol type: genomic DNA

181472
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 181472
product: 12S ribosomal RNA
so part of: sequence
location: 70..1017
location: region:70-1017:1
so has part: feature:70-1017:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1017:1
position: 1017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1017:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Val
so part of: sequence
location: 1018..1089
location: region:1018-1089:1
so has part: feature:1018-1089:1:region

position:1018:1
position: 1018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1018-1089:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 181472
product: 16S ribosomal RNA
so part of: sequence
location: 1090..2766
location: region:1090-2766:1
so has part: feature:1090-2766:1:region

position:1090:1
position: 1090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2766:1
position: 2766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1090-2766:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2767..2841
location: region:2767-2841:1
so has part: feature:2767-2841:1:region

position:2767:1
position: 2767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2841:1
position: 2841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2767-2841:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND1
so part of: sequence
location: 2842..3816
location: region:2842-3816:1
so has part: feature:2842-3816:1:exon
subclass of: SO_0000010

806085
type: Gene
SIO_000068: ncbigene

position:2842:1
position: 2842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3816:1
position: 3816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2842-3816:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MMTTILSSIIHPLILIVFVLLAVALLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADGLKLFMKEPVRPSTSSPILFLLAPMMALTLALTLWTPIPLPFPMADLNLGLLFILAVSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFNTAQEATWLILPAWPLAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSATLFLGTTLLISMPYITTIILMMKATFLAVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPIATAGLPPQY
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2842..3816
location: region:2842-3816:1
so has part: feature:2842-3816:1:exon

NP_740140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2842-3816:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Ile
so part of: sequence
location: 3817..3886
location: region:3817-3886:1
so has part: feature:3817-3886:1:region

position:3817:1
position: 3817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3886:1
position: 3886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817-3886:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Gln
so part of: sequence
location: complement(3886..3956)
location: region:3886-3956:-1
so has part: feature:3886-3956:-1:region

position:3886:-1
position: 3886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3956:-1
position: 3956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3886-3956:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Met
so part of: sequence
location: 3956..4024
location: region:3956-4024:1
so has part: feature:3956-4024:1:region

position:3956:1
position: 3956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4024:1
position: 4024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3956-4024:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND2
so part of: sequence
location: 4025..5067
location: region:4025-5067:1
so has part: feature:4025-5067:1:exon
subclass of: SO_0000010

806083
type: Gene
SIO_000068: ncbigene

position:4025:1
position: 4025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5067:1
position: 5067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4025-5067:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5066..5067,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MSPYIYPIMLMGMLLGTTATMISSHWLLAWMGLELSTIAIIPIMAHLHHPRAVEATTKYFLVQAAAAALLLFASVTNAWLCGEWFIQQMTHPLPTTMIILALAMKLGLAPLHAWLPEVLQGLDLMTGMILSTWQKLAPMALLIQIQPQDPTIFIVLGLASTLIGGWGGLNQTQLRKILAYSSIAHLGWMILIIQFAPSLTLLSLLMYFIMTISSFTIFKHLSSTSIPSLATSWSKAPALTALAPFTLLSLGGLPPLSGFAPKWMILQELTKQQLPLIATVAALSALLSLYFYLRLTYSMSLTISPNTTLNSAPWRLLRQHNTLHIALPTTMTILLLPLTPAALTLLS
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4025..5067
location: region:4025-5067:1
so has part: feature:4025-5067:1:exon

NP_740141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4025-5067:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Trp
so part of: sequence
location: 5068..5140
location: region:5068-5140:1
so has part: feature:5068-5140:1:region

position:5068:1
position: 5068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5140:1
position: 5140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5068-5140:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Ala
so part of: sequence
location: complement(5141..5209)
location: region:5141-5209:-1
so has part: feature:5141-5209:-1:region

position:5141:-1
position: 5141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5209:-1
position: 5209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5141-5209:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Asn
so part of: sequence
location: complement(5211..5283)
location: region:5211-5283:-1
so has part: feature:5211-5283:-1:region

position:5211:-1
position: 5211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5283:-1
position: 5283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5211-5283:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Cys
so part of: sequence
location: complement(5316..5379)
location: region:5316-5379:-1
so has part: feature:5316-5379:-1:region

position:5316:-1
position: 5316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5379:-1
position: 5379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5316-5379:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Tyr
so part of: sequence
location: complement(5379..5448)
location: region:5379-5448:-1
so has part: feature:5379-5448:-1:region

position:5448:-1
position: 5448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5379-5448:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: COX1
so part of: sequence
location: 5450..7021
location: region:5450-7021:1
so has part: feature:5450-7021:1:exon
subclass of: SO_0000010

806076
type: Gene
SIO_000068: ncbigene

position:5450:1
position: 5450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7021:1
position: 7021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5450-7021:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLSGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLFSGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLVSLVAVIMFLFIIWEAFAAKREVSAVELTLTNVEWLHGCPPPYHTFEEPAFVQIQQTSPIYTSP
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5450..7021
location: region:5450-7021:1
so has part: feature:5450-7021:1:exon

NP_740142.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5450-7021:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7030..7100)
location: region:7030-7100:-1
so has part: feature:7030-7100:-1:region

position:7030:-1
position: 7030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7100:-1
position: 7100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7030-7100:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Asp
so part of: sequence
location: 7105..7177
location: region:7105-7177:1
so has part: feature:7105-7177:1:region

position:7105:1
position: 7105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7177:1
position: 7177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7105-7177:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: COX2
so part of: sequence
location: 7181..7871
location: region:7181-7871:1
so has part: feature:7181-7871:1:exon
subclass of: SO_0000010

806082
type: Gene
SIO_000068: ncbigene

position:7181:1
position: 7181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7871:1
position: 7871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7181-7871:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7871,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGLQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTLLPALILILIALPSLRILYLMDEINDPHLTIKAVGHQWYWSYEYTDYEELGFDSYMIPTQDLTPGQFRLLETDHRMVIPVESPIRILVTAEDVLHSWAVPSLGVKMDAVPGRLNQVAFIASRPGVYYGQCSEICGANHSFMPIVVEAVPLKHFENWSSLMLQDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7181..7871
location: region:7181-7871:1
so has part: feature:7181-7871:1:exon

NP_740143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7181-7871:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Lys
so part of: sequence
location: 7872..7945
location: region:7872-7945:1
so has part: feature:7872-7945:1:region

position:7872:1
position: 7872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7945:1
position: 7945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7872-7945:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ATP8
so part of: sequence
location: 7948..8115
location: region:7948-8115:1
so has part: feature:7948-8115:1:exon
subclass of: SO_0000010

806087
type: Gene
SIO_000068: ncbigene

position:7948:1
position: 7948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8115:1
position: 8115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7948-8115:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFMILFFSWLVFLTVIPPKILAHKFPNEPSLTTAEKTKTKSWTWPWY
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7948..8115
location: region:7948-8115:1
so has part: feature:7948-8115:1:exon

NP_740144.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7948-8115:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ATP6
so part of: sequence
location: 8106..8788
location: region:8106-8788:1
so has part: feature:8106-8788:1:exon
subclass of: SO_0000010

806084
type: Gene
SIO_000068: ncbigene

position:8106:1
position: 8106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8788:1
position: 8788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8106-8788:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8787..8788,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMLNFFDQFLSPTLMGIPLILVSLTIPWALYPQPTARWLNNRLLTLQGWFINRFTQQIFLPLSPSGHKWALMLASLMLFLITLNMLGLLPYTFTPTTQLSLNMALAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVALLTTALLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8106..8788
location: region:8106-8788:1
so has part: feature:8106-8788:1:exon

NP_740145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8106-8788:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: COX3
so part of: sequence
location: 8789..9573
location: region:8789-9573:1
so has part: feature:8789-9573:1:exon
subclass of: SO_0000010

806075
type: Gene
SIO_000068: ncbigene

position:8789:1
position: 8789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9573:1
position: 9573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8789-9573:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9572..9573,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLLTSGTAIWMHFHSTTLMTLGLALLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFIGFFWAFYHSSLAPTPELGGCWPPTGITALDPFEVPLLNTAVLLASGVTVTWAHHSIMEGNRKQAIQSLLLTILLGFYFTALQGLEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8789..9573
location: region:8789-9573:1
so has part: feature:8789-9573:1:exon

NP_740146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8789-9573:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Gly
so part of: sequence
location: 9574..9645
location: region:9574-9645:1
so has part: feature:9574-9645:1:region

position:9574:1
position: 9574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9645:1
position: 9645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9574-9645:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND3
so part of: sequence
location: 9646..9994
location: region:9646-9994:1
so has part: feature:9646-9994:1:exon
subclass of: SO_0000010

806078
type: Gene
SIO_000068: ncbigene

position:9646:1
position: 9646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9994:1
position: 9994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9646-9994:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9994,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLIMIMITISAVLSTILALVSFWLPQMSPDHEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGDQLSSPLTTFLWAALVLALLTLGLIYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9646..9994
location: region:9646-9994:1
so has part: feature:9646-9994:1:exon

NP_740147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9646-9994:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Arg
so part of: sequence
location: 9995..10062
location: region:9995-10062:1
so has part: feature:9995-10062:1:region

position:9995:1
position: 9995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10062:1
position: 10062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9995-10062:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND4L
so part of: sequence
location: 10063..10359
location: region:10063-10359:1
so has part: feature:10063-10359:1:exon
subclass of: SO_0000010

806080
type: Gene
SIO_000068: ncbigene

position:10063:1
position: 10063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10359:1
position: 10359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10063-10359:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MMPAQFAFSSAFIVGLAGLAFHRTHLLSALLCLEGMMLSLFIALSLWMLSTDSTTFSASPILLLAFSACEASTGLALLVATSRTHGSDRLHALNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10063..10359
location: region:10063-10359:1
so has part: feature:10063-10359:1:exon

NP_740148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10063-10359:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND4
so part of: sequence
location: 10353..11733
location: region:10353-11733:1
so has part: feature:10353-11733:1:exon
subclass of: SO_0000010

806079
type: Gene
SIO_000068: ncbigene

position:10353:1
position: 10353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11733:1
position: 11733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10353-11733:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11733,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILAPTIMLIPTIWLLPSKKLWSISLSYSLIIAIYSLTLLNNPAEVGWTMLGQYLATDPLSSPLTVLTCWLLPLMILASQNHTAHDPLNRQRTYITLLTSLQMFLILAFNATELIMFYIMFEATLIPTLMIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLHLHNVTGTLSTLTLPLIQPLHLTSYADKFLWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMLRIILLLDPLTKEMSYPFMVLAMWGLVMAGSVCMRQTDLKSLIAYSSVSHMGLVAAGILIQTPWGLAGAIALMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMTLPLMTSWWLLMTLANLALPPSPNLMGELMIIVSAFNWSYWTLILTGTATLITAAYSLYMFLMTQRGPLPPHIIALQPTYSREHLLITLHLLPLLLIILKPETILGWAA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10353..11733
location: region:10353-11733:1
so has part: feature:10353-11733:1:exon

NP_740149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10353-11733:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-His
so part of: sequence
location: 11734..11802
location: region:11734-11802:1
so has part: feature:11734-11802:1:region

position:11734:1
position: 11734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11802:1
position: 11802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11734-11802:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11803..11870
location: region:11803-11870:1
so has part: feature:11803-11870:1:region

position:11803:1
position: 11803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11870:1
position: 11870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11803-11870:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11872..11944
location: region:11872-11944:1
so has part: feature:11872-11944:1:region

position:11872:1
position: 11872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11944:1
position: 11944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11872-11944:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND5
so part of: sequence
location: 11945..13783
location: region:11945-13783:1
so has part: feature:11945-13783:1:exon
subclass of: SO_0000010

806086
type: Gene
SIO_000068: ncbigene

position:11945:1
position: 11945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13783:1
position: 13783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11945-13783:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHLTPLIMSSSMILIFVILVYPTLTTLSPKPTSPSWPLSMAKNSVMISFFVSLVPLVLFMNEGAEAIITNFSWINIHSFNISLSFNFDLYSTVFVPIALYVTWSILEFASWYMHSDPNISRFFKYLLIFLTAMLVLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVLYNRVGDIGLILAMAWLATTLNSWELQQVFMASKDMDLTLPLIGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLMDNNYTAQTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHCLNDEQDIRKMGGMNNLAPTTASALTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALILTLLATSFTAVYSLRVVFFVCMGNPRFNAYTPINENDPHTVNPIKRLAWGSILAGLIITSNILPMKTPVMTMPPLLKLAALAVSILGLLTALELASLTNKQFKPTPFITTHHFSNMLGYFPTLVHRLNPKISLSLGQFVATQMVDQTWMEKTGPKAISEINNPIISTVSNIQQGMIKTYLSLFFFTLAISTVAFAL
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11945..13783
location: region:11945-13783:1
so has part: feature:11945-13783:1:exon

NP_740150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11945-13783:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: ND6
so part of: sequence
location: complement(13780..14301)
location: region:13780-14301:-1
so has part: feature:13780-14301:-1:exon
subclass of: SO_0000010

806081
type: Gene
SIO_000068: ncbigene

position:13780:-1
position: 13780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14301:-1
position: 14301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13780-14301:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MSYLIILFLFGLIVGLAAVGSNPSPFFAALGLVMVAGIGCGILVGWGGSFLSLILFLIYLGGMLVVFAYSAALAAEPYPESWMSWPVLATMVCYLVGVGVVGVLVVDWGGGASVEPVVGGLELGVLRGDISGVALMYSMGGGMLVGGAWVLLLTLFVVLELTRGASRGALRYV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13780..14301)
location: region:13780-14301:-1
so has part: feature:13780-14301:-1:exon

NP_740151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13780-14301:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Glu
so part of: sequence
location: complement(14302..14369)
location: region:14302-14369:-1
so has part: feature:14302-14369:-1:region

position:14302:-1
position: 14302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14369:-1
position: 14369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14302-14369:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 181472
gene: CYTB
so part of: sequence
location: 14374..15514
location: region:14374-15514:1
so has part: feature:14374-15514:1:exon
subclass of: SO_0000010

806077
type: Gene
SIO_000068: ncbigene

position:14374:1
position: 14374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15514:1
position: 15514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14374-15514:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181472
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15514,aa:TERM)
transl table: 2
product: cytochrome b
translation: MANLRKSHPLLKIANDAVVDLPAPANISIWWNFGSLLGLCLIAQLLTGLFLAMHYTSDITTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSIDNATLTRFFAFHFLFPFVIAAVTMVHLIFLHETGSNNPTGLNSDADKISFHPYFSYKDLLGFAALLIALVSLALFSPNLLGDPDNFTPANPLVTPAHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPILHTSKQRSLTFRPLTQFLFWVLIADVLILTWIGGMPVEHPFIIIGQVASFLYFFIFLILSPVAALVENKMLEWQ
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14374..15514
location: region:14374-15514:1
so has part: feature:14374-15514:1:exon

NP_740152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14374-15514:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Thr
so part of: sequence
location: 15515..15586
location: region:15515-15586:1
so has part: feature:15515-15586:1:region

position:15515:1
position: 15515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15586:1
position: 15586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15515-15586:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181472
product: tRNA-Pro
so part of: sequence
location: complement(15586..15655)
location: region:15586-15655:-1
so has part: feature:15586-15655:-1:region

position:15586:-1
position: 15586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15655:-1
position: 15655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15586-15655:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 181472
note: control region
so part of: sequence
location: 15656..16496
location: region:15656-16496:1
so has part: feature:15656-16496:1:region

position:15656:1
position: 15656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15656-16496:1:region