Marasmius oreades isolate 03SP1 mitochondrion, complete sequence, whole genome shotgun sequence.
type: Entry
definition: Marasmius oreades isolate 03SP1 mitochondrion, complete sequence, whole genome shotgun sequence.
sequence version: NW_025064824.1
sequence date: 2021-11-22
sequence: sequence
division: CON
label: NW_025064824.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA756326
dblink: SAMN11081005
keyword: WGS
keyword: RefSeq
source: mitochondrion Marasmius oreades
organism: Marasmius oreades
taxonomy: Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Marasmiaceae; Marasmius.
reference: 1
references: 34051082
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM032192.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: Canu v. 1.7; ARBitR v. 0.1; ALLMAPS v.\n 0.9.14; LR_Gapcloser v. APR-2019; HyPo v.\n FEB-2020\nAssembly Name :: UU_Maror_2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1759.0x\nSequencing Technology :: Oxford Nanopore MinION; PacBio RSII;\n Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 66224
topology: circular
so has quality: SO_0000988
location: 1..66224
location: region:1-66224:1
RO_0002162: 181124

NW_025064824
type: RefSeq
SIO_000068: refseq

PRJNA756326
type: BioProject
SIO_000068: bioproject

SAMN11081005
type: BioSample
SIO_000068: biosample

1
title: The assembled and annotated genome of the fairy-ring fungus Marasmius oreades
author: Hiltunen, M.
author: Ament-Velasquez, S.L.
author: Johannesson, H.
journal: Genome Biol Evol (2021) In press
pubmed: 34051082
comments: Publication Status: Available-Online prior to print

34051082
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (19-NOV-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Hiltunen, M.
author: Ament-Velasquez, S.L.
author: Ryberg, M.
author: Johannesson, H.
journal: Submitted (02-MAR-2021) Department of Organismal Biology, Uppsala University, Norbyvaegen 18D, Uppsala 75236, Sweden

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66224:1
position: 66224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-66224:1:source
so part of: sequence
organism: Marasmius oreades
organelle: mitochondrion
mol type: genomic DNA
isolate: 03SP1
isolation source: Single spore isolate from a mushroom
country: Sweden: Uppsala, Ulleraaker
lat lon: 59.8285997 N 17.6544317 E
collection date: 2015-07-23
collected by: Markus Hiltunen
identified by: Markus Hiltunen

181124
type: Taxonomy
SIO_000068: taxonomy

E1B28_013815
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013815
so part of: sequence
location: 6621..6693
location: region:6621-6693:1
so has part: feature:6621-6693:1:exon
subclass of: SO_0000663

66082890
type: Gene
SIO_000068: ncbigene

position:6621:1
position: 6621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6693:1
position: 6693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6621-6693:1:exon

E1B28_013815
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013815
product: tRNA-Arg
SIO_010081: E1B28_013815
subclass of: SO_0000673
so part of: E1B28_013815
location: 6621..6693
location: region:6621-6693:1
so has part: feature:6621-6693:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6621-6693:1:exon

E1B28_013816
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013816
so part of: sequence
location: 8512..8584
location: region:8512-8584:1
so has part: feature:8512-8584:1:exon
subclass of: SO_0000663

66082891
type: Gene
SIO_000068: ncbigene

position:8512:1
position: 8512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8584:1
position: 8584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8512-8584:1:exon

E1B28_013816
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013816
product: tRNA-Asp
SIO_010081: E1B28_013816
subclass of: SO_0000673
so part of: E1B28_013816
location: 8512..8584
location: region:8512-8584:1
so has part: feature:8512-8584:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8512-8584:1:exon

E1B28_013817
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013817
so part of: sequence
location: <10862..>11818
location: region:10862-11818:1
so has part: feature:10862-11818:1:exon
subclass of: SO_0000010

66082892
type: Gene
SIO_000068: ncbigene

position:10862:1
position: 10862
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:11818:1
position: 11818
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10862-11818:1:exon

E1B28_013817
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 181124
locus tag: E1B28_013817
product: uncharacterized protein
SIO_010081: E1B28_013817
subclass of: SO_0000673
so part of: E1B28_013817
location: <10862..>11818
location: region:10862-11818:1
so has part: feature:10862-11818:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10862-11818:1:exon

E1B28_013817
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 181124
locus tag: E1B28_013817
codon start: 1
transl table: 4
product: uncharacterized protein
translation: MNRPIINQYLKSMSIYNMISNGTIMYFSNIIGYNFYNKNLRPETQNIYKLLYSSFRSMYCLISKPVFIIKSNKIIIQLFYFLLVPRIFKYKKKKKYSYIKKRKGYVFFNNKFNVIKRSNRFTANNNSIVNTQNTNFNFKIKFNQKLLKKFIKKKSISKRKQLVKLDKINLINLYPLKFKKLCEVLNNFFKKPVELDLIRLHYPYNDSNILVRLLAFMINKIKIRRITRKLFKNAVIKSIKKNNNKDKTNIIPAFLSGLTIKVAGRLMKYKVIPRKTVKIVKRGSSSIGKINYTDFSRYTNKNRRGAFTIFIKSGQNFF
SIO_010081: E1B28_013817
subclass of: SO_0000673
so part of: E1B28_013817
location: 10862..11818
location: region:10862-11818:1
so has part: feature:10862-11818:1:exon

XP_043001794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10862-11818:1:exon

E1B28_013818
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013818
so part of: sequence
location: 28540..28612
location: region:28540-28612:1
so has part: feature:28540-28612:1:exon
subclass of: SO_0000663

66082893
type: Gene
SIO_000068: ncbigene

position:28540:1
position: 28540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28612:1
position: 28612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28540-28612:1:exon

E1B28_013818
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013818
product: tRNA-Arg
SIO_010081: E1B28_013818
subclass of: SO_0000673
so part of: E1B28_013818
location: 28540..28612
location: region:28540-28612:1
so has part: feature:28540-28612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28540-28612:1:exon

E1B28_013819
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013819
so part of: sequence
location: 29495..29566
location: region:29495-29566:1
so has part: feature:29495-29566:1:exon
subclass of: SO_0000663

66082894
type: Gene
SIO_000068: ncbigene

position:29495:1
position: 29495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29566:1
position: 29566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29495-29566:1:exon

E1B28_013819
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013819
product: tRNA-Phe
SIO_010081: E1B28_013819
subclass of: SO_0000673
so part of: E1B28_013819
location: 29495..29566
location: region:29495-29566:1
so has part: feature:29495-29566:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29495-29566:1:exon

E1B28_013820
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013820
so part of: sequence
location: 29868..29939
location: region:29868-29939:1
so has part: feature:29868-29939:1:exon
subclass of: SO_0000663

66082895
type: Gene
SIO_000068: ncbigene

position:29868:1
position: 29868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29939:1
position: 29939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29868-29939:1:exon

E1B28_013820
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013820
product: tRNA-Thr
SIO_010081: E1B28_013820
subclass of: SO_0000673
so part of: E1B28_013820
location: 29868..29939
location: region:29868-29939:1
so has part: feature:29868-29939:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29868-29939:1:exon

E1B28_013821
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013821
so part of: sequence
location: 30677..30749
location: region:30677-30749:1
so has part: feature:30677-30749:1:exon
subclass of: SO_0000663

66082896
type: Gene
SIO_000068: ncbigene

position:30677:1
position: 30677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30749:1
position: 30749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30677-30749:1:exon

E1B28_013821
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013821
product: tRNA-Lys
SIO_010081: E1B28_013821
subclass of: SO_0000673
so part of: E1B28_013821
location: 30677..30749
location: region:30677-30749:1
so has part: feature:30677-30749:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30677-30749:1:exon

E1B28_013822
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013822
so part of: sequence
location: 31055..31127
location: region:31055-31127:1
so has part: feature:31055-31127:1:exon
subclass of: SO_0000663

66082897
type: Gene
SIO_000068: ncbigene

position:31055:1
position: 31055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31127:1
position: 31127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31055-31127:1:exon

E1B28_013822
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013822
product: tRNA-Asn
SIO_010081: E1B28_013822
subclass of: SO_0000673
so part of: E1B28_013822
location: 31055..31127
location: region:31055-31127:1
so has part: feature:31055-31127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31055-31127:1:exon

E1B28_013823
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013823
so part of: sequence
location: 32040..32111
location: region:32040-32111:1
so has part: feature:32040-32111:1:exon
subclass of: SO_0000663

66082898
type: Gene
SIO_000068: ncbigene

position:32040:1
position: 32040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32111:1
position: 32111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32040-32111:1:exon

E1B28_013823
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013823
product: tRNA-Met
SIO_010081: E1B28_013823
subclass of: SO_0000673
so part of: E1B28_013823
location: 32040..32111
location: region:32040-32111:1
so has part: feature:32040-32111:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32040-32111:1:exon

E1B28_013824
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013824
so part of: sequence
location: 32411..32481
location: region:32411-32481:1
so has part: feature:32411-32481:1:exon
subclass of: SO_0000663

66082899
type: Gene
SIO_000068: ncbigene

position:32411:1
position: 32411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32481:1
position: 32481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32411-32481:1:exon

E1B28_013824
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013824
product: tRNA-Glu
SIO_010081: E1B28_013824
subclass of: SO_0000673
so part of: E1B28_013824
location: 32411..32481
location: region:32411-32481:1
so has part: feature:32411-32481:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32411-32481:1:exon

E1B28_013825
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013825
so part of: sequence
location: 48994..49065
location: region:48994-49065:1
so has part: feature:48994-49065:1:exon
subclass of: SO_0000663

66082900
type: Gene
SIO_000068: ncbigene

position:48994:1
position: 48994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49065:1
position: 49065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48994-49065:1:exon

E1B28_013825
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013825
product: tRNA-Val
SIO_010081: E1B28_013825
subclass of: SO_0000673
so part of: E1B28_013825
location: 48994..49065
location: region:48994-49065:1
so has part: feature:48994-49065:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48994-49065:1:exon

E1B28_013826
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013826
so part of: sequence
location: 50588..50660
location: region:50588-50660:1
so has part: feature:50588-50660:1:exon
subclass of: SO_0000663

66082901
type: Gene
SIO_000068: ncbigene

position:50588:1
position: 50588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50660:1
position: 50660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50588-50660:1:exon

E1B28_013826
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013826
product: tRNA-Met
SIO_010081: E1B28_013826
subclass of: SO_0000673
so part of: E1B28_013826
location: 50588..50660
location: region:50588-50660:1
so has part: feature:50588-50660:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50588-50660:1:exon

E1B28_013827
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013827
so part of: sequence
location: 56681..56764
location: region:56681-56764:1
so has part: feature:56681-56764:1:exon
subclass of: SO_0000663

66082902
type: Gene
SIO_000068: ncbigene

position:56681:1
position: 56681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56764:1
position: 56764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56681-56764:1:exon

E1B28_013827
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013827
product: tRNA-Tyr
SIO_010081: E1B28_013827
subclass of: SO_0000673
so part of: E1B28_013827
location: 56681..56764
location: region:56681-56764:1
so has part: feature:56681-56764:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56681-56764:1:exon

E1B28_013828
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013828
so part of: sequence
location: 60246..60318
location: region:60246-60318:1
so has part: feature:60246-60318:1:exon
subclass of: SO_0000663

66082903
type: Gene
SIO_000068: ncbigene

position:60246:1
position: 60246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60318:1
position: 60318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60246-60318:1:exon

E1B28_013828
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013828
product: tRNA-Met
SIO_010081: E1B28_013828
subclass of: SO_0000673
so part of: E1B28_013828
location: 60246..60318
location: region:60246-60318:1
so has part: feature:60246-60318:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60246-60318:1:exon

E1B28_013829
type: Gene
subclass of: SO_0000704
RO_0002162: 181124
locus tag: E1B28_013829
so part of: sequence
location: 60712..60799
location: region:60712-60799:1
so has part: feature:60712-60799:1:exon
subclass of: SO_0000663

66082904
type: Gene
SIO_000068: ncbigene

position:60712:1
position: 60712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60799:1
position: 60799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60712-60799:1:exon

E1B28_013829
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 181124
locus tag: E1B28_013829
product: tRNA-Ser
SIO_010081: E1B28_013829
subclass of: SO_0000673
so part of: E1B28_013829
location: 60712..60799
location: region:60712-60799:1
so has part: feature:60712-60799:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60712-60799:1:exon