Mycobacterium ulcerans strain JKD8049 plasmid pMUM004, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium ulcerans group.
Complete genome sequence of Mycobacterium ulcerans strain JKD8049
Submitted (15-OCT-2021) Doherty Applied Microbial Genomics, Microbiology and Immunology, University of Melbourne, 792 Elizabeth St, Melbourne, Victoria 3000, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP085201.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2021\nAssembly Method :: FLYE v. 2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 240.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 08:00:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,201\nCDSs (total) :: 5,149\nGenes (coding) :: 4,314\nCDSs (with protein) :: 4,314\nGenes (RNA) :: 52\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 835\nCDSs (without protein) :: 835\nPseudo Genes (ambiguous residues) :: 0 of 835\nPseudo Genes (frameshifted) :: 457 of 835\nPseudo Genes (incomplete) :: 333 of 835\nPseudo Genes (internal stop) :: 188 of 835\nPseudo Genes (multiple problems) :: 133 of 835\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Victorian Infectious Diseases Reference Laboratory
COORDINATES: similar to AA sequence:RefSeq:WP_007172133.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022280.2
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007172135.1
COORDINATES: protein motif:HMM:NF013127.2
COORDINATES: similar to AA sequence:RefSeq:WP_012552900.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_007172139.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552898.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF027613.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558065.1
IS256-like element IS2606 family transposase
COORDINATES: protein motif:HMM:TIGR03919.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012552891.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022169.2
COORDINATES: similar to AA sequence:RefSeq:WP_011739937.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003910224.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007323625.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015357701.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552886.1
ketoacyl-ACP synthase III family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012552881.1
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_011142671.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552885.1
COORDINATES: similar to AA sequence:RefSeq:WP_011178520.1
COORDINATES: similar to AA sequence:RefSeq:WP_011178519.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_012552879.1
COORDINATES: protein motif:HMM:NF033559.1
COORDINATES: protein motif:HMM:NF033542.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012552873.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007171764.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552861.1
COORDINATES: protein motif:HMM:TIGR03544.1
COORDINATES: protein motif:HMM:NF013648.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012298.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012552850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552844.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552843.1
COORDINATES: similar to AA sequence:RefSeq:WP_014805336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172374.1