Candidatus Promineofilum breve strain Cfx-K plasmid III, complete sequence.
Bacteria; Chloroflexota; Ardenticatenia; Ardenticatenia incertae sedis; Candidatus Promineifilum.
Submitted (19-JAN-2016) Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Centre for Microbial Communities, Fredrik Bajers Vej 7H, Aalborg East DK-9220, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nLN890657.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 20:01:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,375\nCDSs (total) :: 4,319\nGenes (coding) :: 4,283\nCDSs (with protein) :: 4,283\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 3 of 36\nPseudo Genes (incomplete) :: 34 of 36\nPseudo Genes (internal stop) :: 1 of 36\nPseudo Genes (multiple problems) :: 2 of 36\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024835.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015974224.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF040088.1
COORDINATES: similar to AA sequence:RefSeq:WP_015975452.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201865.1
COORDINATES: protein motif:HMM:NF015802.2
COORDINATES: protein motif:HMM:NF021473.2
COORDINATES: protein motif:HMM:NF021627.2
COORDINATES: protein motif:HMM:NF016148.2
COORDINATES: protein motif:HMM:NF015550.2
COORDINATES: similar to AA sequence:RefSeq:WP_019727231.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020290.2
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: protein motif:HMM:NF039495.1