Enterococcus saigonensis strain VE80 plasmid pVE80-2, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.
Characterization of vanA genotype vancomycin-resistant Enterococcus saigonensis VE80
Submitted (26-FEB-2020) Contact:Tetsuya Harada Osaka Institute of Public Health, Division of Bacteriology; Nakamichi 1-3-69,Higashinari-ku, Osaka, Osaka 537-0025, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP022824.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Coverage :: 213x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 03:19:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,765\nCDSs (total) :: 2,679\nGenes (coding) :: 2,642\nCDSs (with protein) :: 2,642\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 15 of 37\nPseudo Genes (incomplete) :: 26 of 37\nPseudo Genes (internal stop) :: 6 of 37\nPseudo Genes (multiple problems) :: 10 of 37\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF018169.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_002378884.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060376.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Tet(L)/Tet(K)/Tet(45) family tetracycline efflux MFS transporter
COORDINATES: protein motif:HMM:NF012239.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_016632525.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015081747.1
COORDINATES: similar to AA sequence:RefSeq:WP_002339159.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_002336758.1